-
1
-
-
0004122931
-
-
USA: Saunders College Publishing, Harcourt Brace College Publishers
-
Garrett R.H., Grishnan C.M. Biochemistry. 1985;Saunders College Publishing, Harcourt Brace College Publishers, USA.
-
(1985)
Biochemistry
-
-
Garrett, R.H.1
Grishnan, C.M.2
-
2
-
-
0033592939
-
New insights into inhibitor design from the crystal structure and NMR studies of Escherichia coli GAR transformylase in complex with beta-GAR and 10-formyl-5,8,10-trideazafolic acid
-
Greasley S.E., Yamashita M.M., Cai H., Benkovic S.J., Boger D.L., Wilson I.A. New insights into inhibitor design from the crystal structure and NMR studies of Escherichia coli GAR transformylase in complex with beta-GAR and 10-formyl-5,8,10-trideazafolic acid. Biochemistry. 38:1999;16783-16793.
-
(1999)
Biochemistry
, vol.38
, pp. 16783-16793
-
-
Greasley, S.E.1
Yamashita, M.M.2
Cai, H.3
Benkovic, S.J.4
Boger, D.L.5
Wilson, I.A.6
-
3
-
-
0001688143
-
Evaluation of the kinetic mechanism of Escherichia coli glycinamide ribonucleotide transformylase
-
Shim J.H., Benkovic S.J. Evaluation of the kinetic mechanism of Escherichia coli glycinamide ribonucleotide transformylase. Biochemistry. 37:1998;8776-8782.
-
(1998)
Biochemistry
, vol.37
, pp. 8776-8782
-
-
Shim, J.H.1
Benkovic, S.J.2
-
4
-
-
0001563512
-
Catalytic mechanism of Escherichia coli glycinamide ribonucleotide transformylase probed by site-directed mutagenesis and pH-dependent studies
-
Shim J.H., Benkovic S.J. Catalytic mechanism of Escherichia coli glycinamide ribonucleotide transformylase probed by site-directed mutagenesis and pH-dependent studies. Biochemistry. 38:1999;10024-10031.
-
(1999)
Biochemistry
, vol.38
, pp. 10024-10031
-
-
Shim, J.H.1
Benkovic, S.J.2
-
5
-
-
0026668340
-
Structures of apo and complexed Escherichia coli glycinamide ribonucleotide transformylase
-
Almassy R.J., Janson C.A., Kan C.C., Hostomska Z. Structures of apo and complexed Escherichia coli glycinamide ribonucleotide transformylase. Proc. Natl. Acad. Sci. USA. 89:1992;6114-6118.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 6114-6118
-
-
Almassy, R.J.1
Janson, C.A.2
Kan, C.C.3
Hostomska, Z.4
-
6
-
-
0030580073
-
Glycinamide ribonucleotide transformylase undergoes pH-dependent dimerization
-
Mullen C.A., Jennings P.A. Glycinamide ribonucleotide transformylase undergoes pH-dependent dimerization. J. Mol. Biol. 262:1996;746-755.
-
(1996)
J. Mol. Biol.
, vol.262
, pp. 746-755
-
-
Mullen, C.A.1
Jennings, P.A.2
-
7
-
-
0032555703
-
A pH-dependent stabilization of an active site loop observed from low and high pH crystal structures of mutant monomeric glycinamide ribonucleotide transformylase at 1.8 to 1.9 A
-
Su Y., Yamashita M.M., Greasley S.E., Mullen C.A., Shim J.H., Jennings P.A. A pH-dependent stabilization of an active site loop observed from low and high pH crystal structures of mutant monomeric glycinamide ribonucleotide transformylase at 1.8 to 1.9 A. J. Mol. Biol. 281:1998;485-499.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 485-499
-
-
Su, Y.1
Yamashita, M.M.2
Greasley, S.E.3
Mullen, C.A.4
Shim, J.H.5
Jennings, P.A.6
-
8
-
-
0034779063
-
Native-state conformational dynamics of GART: A regulatory pH-dependent coil-helix transition examined by electrostatic calculations
-
Morikis D., Elcock A.H., Jennings P.A., McCammon J.A. Native-state conformational dynamics of GART: a regulatory pH-dependent coil-helix transition examined by electrostatic calculations. Protein Sci. 10:2001;2363-2378.
-
(2001)
Protein Sci.
, vol.10
, pp. 2363-2378
-
-
Morikis, D.1
Elcock, A.H.2
Jennings, P.A.3
McCammon, J.A.4
-
9
-
-
0034779681
-
Proton transfer dynamics of GART: The pH-dependent catalytic mechanism examined by electrostatic calculations
-
Morikis D., Elcock A.H., Jennings P.A., McCammon J.A. Proton transfer dynamics of GART: the pH-dependent catalytic mechanism examined by electrostatic calculations. Protein Sci. 10:2001;2379-2392.
-
(2001)
Protein Sci.
, vol.10
, pp. 2379-2392
-
-
Morikis, D.1
Elcock, A.H.2
Jennings, P.A.3
McCammon, J.A.4
-
10
-
-
0027231258
-
On the pH dependence of protein stability
-
Yang A.S., Honig B. On the pH dependence of protein stability. J. Mol. Biol. 231:1993;459-474.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 459-474
-
-
Yang, A.S.1
Honig, B.2
-
11
-
-
0028361968
-
Structural origins of pH and ionic strength effects on protein stability. acid denaturation of sperm whale apomyoglobin
-
Yang A.S., Honig B. Structural origins of pH and ionic strength effects on protein stability. acid denaturation of sperm whale apomyoglobin. J. Mol. Biol. 237:1994;602-614.
-
(1994)
J. Mol. Biol.
, vol.237
, pp. 602-614
-
-
Yang, A.S.1
Honig, B.2
-
13
-
-
0012652144
-
Theoretical modeling of electrostatic effects of titratable side-chain groups on protein conformation in a polar ionic solution. 2 pH-induced helix-coil transition of poly(L-lysine) in water and methanol ionic solutions
-
Vorobjev Y.N., Scheraga H.A., Honig B. Theoretical modeling of electrostatic effects of titratable side-chain groups on protein conformation in a polar ionic solution. 2 pH-induced helix-coil transition of poly(L-lysine) in water and methanol ionic solutions. J. of Phys. Chem. 99:1995;7180-7187.
-
(1995)
J. of Phys. Chem.
, vol.99
, pp. 7180-7187
-
-
Vorobjev, Y.N.1
Scheraga, H.A.2
Honig, B.3
-
14
-
-
0033544710
-
Realistic modeling of the denatured states of proteins allows accurate calculations of the pH dependence of protein stability
-
Elcock A.H. Realistic modeling of the denatured states of proteins allows accurate calculations of the pH dependence of protein stability. J. Mol. Biol. 294:1999;1051-1062.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1051-1062
-
-
Elcock, A.H.1
-
15
-
-
0014718113
-
Protein denaturation. C. theoretical models for the mechanism of denaturation
-
Tanford C. Protein denaturation. C. theoretical models for the mechanism of denaturation. Adv. Protein Chem. 24:1970;1-95.
-
(1970)
Adv. Protein Chem.
, vol.24
, pp. 1-95
-
-
Tanford, C.1
-
16
-
-
0027477251
-
Multiple-site titration and molecular modelling: Two rapid methods for computing energies and forces for ionizable groups in proteins
-
Gilson M.K. Multiple-site titration and molecular modelling: two rapid methods for computing energies and forces for ionizable groups in proteins. Proteins Struct. Funct. Genet. 15:1993;266-282.
-
(1993)
Proteins Struct. Funct. Genet.
, vol.15
, pp. 266-282
-
-
Gilson, M.K.1
-
18
-
-
85050521214
-
Biological applications of electrostatic calculations and brownian dynamics simulations
-
Madura J.D., Davis M.E., Gilson M.K., Wade R.C., Luty B.A., McCammon J.A. Biological applications of electrostatic calculations and brownian dynamics simulations. Rev. Comput. Chem. 5:1994;229-267.
-
(1994)
Rev. Comput. Chem.
, vol.5
, pp. 229-267
-
-
Madura, J.D.1
Davis, M.E.2
Gilson, M.K.3
Wade, R.C.4
Luty, B.A.5
McCammon, J.A.6
-
19
-
-
0029633152
-
Electrostatics and diffusion of molecules in solution: Simulations with the University of Houston Brownian Dynamics Program
-
Madura J.D., Briggs J.M., Wade R.C., Davis M.E., Luty B.A., Ilin A., Antosiewicz J., Gilson M.K., Bagheri B., Scott L.R., McCammon J.A. Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics Program. Comput. Phys. Commun. 91:1995;57-95.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 57-95
-
-
Madura, J.D.1
Briggs, J.M.2
Wade, R.C.3
Davis, M.E.4
Luty, B.A.5
Ilin, A.6
Antosiewicz, J.7
Gilson, M.K.8
Bagheri, B.9
Scott, L.R.10
McCammon, J.A.11
-
20
-
-
32844457567
-
Accurate calculation of hydration free energies using macroscopic solvent models
-
Sitkoff D., Sharp K.A., Honig B. Accurate calculation of hydration free energies using macroscopic solvent models. J. Phys. Chem. 98:1994;1978-1988.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1978-1988
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
22
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization and dynamics calculations
-
Brooks B.R., Bruccoleri R.E., Olafson B.D., States D.J., Swaminathan S., Karplus M. CHARMM: a program for macromolecular energy, minimization and dynamics calculations. J. Comput. Chem. 4:1983;187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
23
-
-
0032870608
-
Improving macromolecular electrostatics calculations
-
Nielsen J.E., Andersen K.V., Honig B., Hooft R.W., Klebe G., Vriend G. Improving macromolecular electrostatics calculations. Protein Eng. 12:1999;657-662.
-
(1999)
Protein Eng.
, vol.12
, pp. 657-662
-
-
Nielsen, J.E.1
Andersen, K.V.2
Honig, B.3
Hooft, R.W.4
Klebe, G.5
Vriend, G.6
-
24
-
-
0025398721
-
WHAT IF: A molecular modeling and drug design program
-
Vriend G. WHAT IF: a molecular modeling and drug design program. J. Mol. Graph. 8:1990;52-56, 29.
-
(1990)
J. Mol. Graph.
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
25
-
-
0030442990
-
Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures
-
R.W.W Hooft, C. Sander, G. Vriend: Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures. Proteins: Struct. Funct. Genet. 26 (1996).
-
(1996)
Proteins: Struct. Funct. Genet.
, vol.26
-
-
Hooft, R.W.W.1
Sander, C.2
Vriend, G.3
-
27
-
-
0030736114
-
Free energy of amide hydrogen bond formation in vacuum, in water, and in liquid alkane solution
-
Ben-Tal N., Sitkoff D., Topol I.A., Yang A.S., Burt S.K., Honig B. Free energy of amide hydrogen bond formation in vacuum, in water, and in liquid alkane solution. J. Phys. Chem. 101:1997;450-457.
-
(1997)
J. Phys. Chem.
, vol.101
, pp. 450-457
-
-
Ben-Tal, N.1
Sitkoff, D.2
Topol, I.A.3
Yang, A.S.4
Burt, S.K.5
Honig, B.6
-
28
-
-
0035856543
-
Unexpected formation of an epoxide-derived multisubstrate adduct inhibitor on the active site of GAR transformylase
-
Greasley S.E., Marsilje T.H., Cai H., Baker S., Benkovic S.J., Boger D.L. Unexpected formation of an epoxide-derived multisubstrate adduct inhibitor on the active site of GAR transformylase. Biochemistry. 40:2001;13538-13547.
-
(2001)
Biochemistry
, vol.40
, pp. 13538-13547
-
-
Greasley, S.E.1
Marsilje, T.H.2
Cai, H.3
Baker, S.4
Benkovic, S.J.5
Boger, D.L.6
-
29
-
-
0026758035
-
Crystal structure of glycinamide ribonucleotide transformylase from Escherichia coli at 3.0 a resolution a target enzyme for chemotherapy
-
Chen P., Schulze-Gahmen U., Stura E.A., Inglese J., Johnson D.L., Marolewski A. Crystal structure of glycinamide ribonucleotide transformylase from Escherichia coli at 3.0 a resolution a target enzyme for chemotherapy. J. Mol. Biol. 227:1992;283-292.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 283-292
-
-
Chen, P.1
Schulze-Gahmen, U.2
Stura, E.A.3
Inglese, J.4
Johnson, D.L.5
Marolewski, A.6
-
30
-
-
0029025769
-
Towards structure-based drug design: Crystal structure of a multisubstrate adduct complex of glycinamide ribonucleotide transformylase at 1.96 A resolution
-
Klein C., Chen P., Arevalo J.H., Stura E.A., Marolewski A., Warren M.S. Towards structure-based drug design: crystal structure of a multisubstrate adduct complex of glycinamide ribonucleotide transformylase at 1.96 A resolution. J. Mol. Biol. 249:1995;153-175.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 153-175
-
-
Klein, C.1
Chen, P.2
Arevalo, J.H.3
Stura, E.A.4
Marolewski, A.5
Warren, M.S.6
-
31
-
-
0032489429
-
A single mutation disrupts the pH-dependent dimerization of glycinamide ribonucleotide transformylase
-
Mullen C.A., Jennings P.A. A single mutation disrupts the pH-dependent dimerization of glycinamide ribonucleotide transformylase. J. Mol. Biol. 276:1998;819-827.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 819-827
-
-
Mullen, C.A.1
Jennings, P.A.2
-
32
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex N., Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis. 18:1997;2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
|