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Volumn 281, Issue 3, 1998, Pages 485-499

A pH-dependent stabilization of an active site loop observed from low and high pH crystal structures of mutant monomeric glycinamide ribonucleotide transformylase at 1.8 to 1.9 Å

Author keywords

Enzyme mechanism; Folate cofactors; Loop flexibility; Monomer dimer association; Purine biosynthesis

Indexed keywords

4 AMINOBENZOIC ACID; FOLIC ACID; OXYGEN; PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE;

EID: 0032555703     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.1931     Document Type: Article
Times cited : (38)

References (44)
  • 1
    • 0026668340 scopus 로고
    • Structures of apo and complexed Eschericia coli glycinamide ribonucleotide transformylase
    • Almassy R.J., Janson C.A., Kan C.-C., Hostomska Z. Structures of apo and complexed Eschericia coli glycinamide ribonucleotide transformylase. Proc. Natl Acad. Sci. USA. 89:1992;6114-6118
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 6114-6118
    • Almassy, R.J.1    Janson, C.A.2    Kan, C.-C.3    Hostomska, Z.4
  • 2
    • 0027236794 scopus 로고
    • Structural basis of amino acid alpha helix propensity
    • Blaber M., Zhang X.J., Matthews B.W. Structural basis of amino acid alpha helix propensity. Science. 260:1993;1637-1640
    • (1993) Science , vol.260 , pp. 1637-1640
    • Blaber, M.1    Zhang, X.J.2    Matthews, B.W.3
  • 3
    • 0029645123 scopus 로고
    • Three new crystal structures of point mutation variants of monoTIM: Conformational flexibility of loop-1, loop-4 and loop-8
    • Borchert T.V., Kishan K.V., Zeelen J.P., Schliebs W., Thanki N., Abagyan R., Jaenicke R., Wierenga R.K. Three new crystal structures of point mutation variants of monoTIM conformational flexibility of loop-1, loop-4 and loop-8. Structure. 3:1995;669-679
    • (1995) Structure , vol.3 , pp. 669-679
    • Borchert, T.V.1    Kishan, K.V.2    Zeelen, J.P.3    Schliebs, W.4    Thanki, N.5    Abagyan, R.6    Jaenicke, R.7    Wierenga, R.K.8
  • 6
    • 0026597444 scopus 로고
    • Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
    • Brünger A.T. Free R value a novel statistical quantity for assessing the accuracy of crystal structures. Nature. 355:1992;472-474
    • (1992) Nature , vol.355 , pp. 472-474
    • Brünger, A.T.1
  • 7
    • 0028103275 scopus 로고
    • The CCP4 suite; Programs for protein crystallography
    • The CCP4 suite; programs for protein crystallography. Acta Crystallog. sect. D. 50:1994;760-763
    • (1994) Acta Crystallog. Sect. D , vol.50 , pp. 760-763
  • 8
    • 0026758035 scopus 로고
    • Crystal structure of glycinamide ribonucleotide transformylase from Escherichia coli at 3.0 Å resolution. a target enzyme for chemotherapy
    • Chen P., Schulze-Gahmen U., Stura E.A., Inglese J., Johnson D.L., Marolewski A., Benkovic S.J., Wilson I.A. Crystal structure of glycinamide ribonucleotide transformylase from Escherichia coli at 3.0 Å resolution. A target enzyme for chemotherapy. J. Mol. Biol. 227:1992;283-292
    • (1992) J. Mol. Biol. , vol.227 , pp. 283-292
    • Chen, P.1    Schulze-Gahmen, U.2    Stura, E.A.3    Inglese, J.4    Johnson, D.L.5    Marolewski, A.6    Benkovic, S.J.7    Wilson, I.A.8
  • 9
    • 0026734321 scopus 로고
    • Structural basis of human erythrocyte glucose transporter function: PH effects on intrinsic fluorescence
    • Chin J.J., Jhun B.H., Jung C.Y. Structural basis of human erythrocyte glucose transporter function pH effects on intrinsic fluorescence. Biochemistry. 31:1992;1945-1951
    • (1992) Biochemistry , vol.31 , pp. 1945-1951
    • Chin, J.J.1    Jhun, B.H.2    Jung, C.Y.3
  • 10
    • 0000538815 scopus 로고
    • Analytical molecular surface calculation
    • Connolly M.L. Analytical molecular surface calculation. J. Appl. Crystallog. 16:1983;548-558
    • (1983) J. Appl. Crystallog. , vol.16 , pp. 548-558
    • Connolly, M.L.1
  • 12
    • 84944510121 scopus 로고
    • Cryocrystallography of biological macromolecules: A generally applicable method
    • Hope M. Cryocrystallography of biological macromolecules a generally applicable method. Acta Crystallog. sect. B. 44:1988;22-26
    • (1988) Acta Crystallog. Sect. B , vol.44 , pp. 22-26
    • Hope, M.1
  • 13
    • 0025124615 scopus 로고
    • Subcloning, characterization, and affinity labeling of Escherichia coli glycinamide ribonucleotide transformylase
    • Inglese J., Johnson D.L., Shiau A., Smith J.M., Benkovic S.J. Subcloning, characterization, and affinity labeling of Escherichia coli glycinamide ribonucleotide transformylase. Biochemistry. 29:1990;1436-1443
    • (1990) Biochemistry , vol.29 , pp. 1436-1443
    • Inglese, J.1    Johnson, D.L.2    Shiau, A.3    Smith, J.M.4    Benkovic, S.J.5
  • 14
    • 0025316947 scopus 로고
    • Active-site mapping and site-specific mutagenesis of glycinamide ribonucleotide transformylase from Escherichia coli
    • Inglese J., Smith J.M., Benkovic S.J. Active-site mapping and site-specific mutagenesis of glycinamide ribonucleotide transformylase from Escherichia coli. Biochemistry. 29:1990;6678-6687
    • (1990) Biochemistry , vol.29 , pp. 6678-6687
    • Inglese, J.1    Smith, J.M.2    Benkovic, S.J.3
  • 15
    • 0029025730 scopus 로고
    • Inhibitors of thymidylate synthase and glycinamide ribonucleotide transformylase
    • Jackson R.C. Inhibitors of thymidylate synthase and glycinamide ribonucleotide transformylase. Advan. Exp. Med. Biol. 370:1994;179-183
    • (1994) Advan. Exp. Med. Biol. , vol.370 , pp. 179-183
    • Jackson, R.C.1
  • 16
    • 0030973630 scopus 로고    scopus 로고
    • Contributions of protein structure-based drug design to cancer chemotherapy
    • Jackson R.C. Contributions of protein structure-based drug design to cancer chemotherapy. Semin. Oncol. 24:1997;164-172
    • (1997) Semin. Oncol. , vol.24 , pp. 164-172
    • Jackson, R.C.1
  • 17
    • 0026206788 scopus 로고
    • Sparse matrix sampling: A screening method for crystallization of proteins
    • Jancarik J., Kim S. Sparse matrix sampling a screening method for crystallization of proteins. J. Appl. Crystallog. 24:1991;409-411
    • (1991) J. Appl. Crystallog. , vol.24 , pp. 409-411
    • Jancarik, J.1    Kim, S.2
  • 18
    • 0028172551 scopus 로고
    • Protein hydration observed by X-ray diffraction. Solvation properties of penicillopepsin and neuraminidase crystal structures
    • Jiang J.S., Brünger A.T. Protein hydration observed by X-ray diffraction. Solvation properties of penicillopepsin and neuraminidase crystal structures. J. Mol. Biol. 243:1994;100-115
    • (1994) J. Mol. Biol. , vol.243 , pp. 100-115
    • Jiang, J.S.1    Brünger, A.T.2
  • 19
    • 84889120137 scopus 로고
    • Methods for building protein models in electron density maps and location of errors in these models
    • Jones A.T., Zou J.Y., Cowan S.W. Methods for building protein models in electron density maps and location of errors in these models. Acta Crystallog. sect. A. 47:1991;110-119
    • (1991) Acta Crystallog. Sect. a , vol.47 , pp. 110-119
    • Jones, A.T.1    Zou, J.Y.2    Cowan, S.W.3
  • 20
    • 0026494632 scopus 로고
    • Heterologous expression and purification of active human phosphoribosylglycinamide formyltransferase as a single domain
    • Kan C.C., Gehring M.R., Nodes B.R., Janson C.A., Almassy R.J., Hostomska Z. Heterologous expression and purification of active human phosphoribosylglycinamide formyltransferase as a single domain. J. Protein Chem. 11:1992;467-473
    • (1992) J. Protein Chem. , vol.11 , pp. 467-473
    • Kan, C.C.1    Gehring, M.R.2    Nodes, B.R.3    Janson, C.A.4    Almassy, R.J.5    Hostomska, Z.6
  • 21
    • 0029025769 scopus 로고
    • Towards structure-based drug design: Crystal structure of a multisubstrate adduct complex of glycinamide ribonucleotide transformylase at 1.96 Å resolution
    • Klein C., Chen P., Arevalo J.H., Stura E.A., Marolewski A., Warren M.S., Benkovic S.J., Wilson I.A. Towards structure-based drug design crystal structure of a multisubstrate adduct complex of glycinamide ribonucleotide transformylase at 1.96 Å resolution. J. Mol. Biol. 249:1995;153-175
    • (1995) J. Mol. Biol. , vol.249 , pp. 153-175
    • Klein, C.1    Chen, P.2    Arevalo, J.H.3    Stura, E.A.4    Marolewski, A.5    Warren, M.S.6    Benkovic, S.J.7    Wilson, I.A.8
  • 22
    • 0030586823 scopus 로고    scopus 로고
    • Checking your imagination: Applications of the free R value
    • Kleywegt G.J., Brünger A.T. Checking your imagination applications of the free R value. Structure. 4:1996;897-904
    • (1996) Structure , vol.4 , pp. 897-904
    • Kleywegt, G.J.1    Brünger, A.T.2
  • 23
    • 0026645602 scopus 로고
    • Variability of conformations at crystal contacts in BPTI represent true low-energy structures: Correspondence among lattice packing and molecular dynamics structures
    • Kossiakoff A.A., Randal M., Guenot J., Eigenbrot C. Variability of conformations at crystal contacts in BPTI represent true low-energy structures correspondence among lattice packing and molecular dynamics structures. Proteins: Struct. Funct. Genet. 14:1992;65-74
    • (1992) Proteins: Struct. Funct. Genet. , vol.14 , pp. 65-74
    • Kossiakoff, A.A.1    Randal, M.2    Guenot, J.3    Eigenbrot, C.4
  • 24
    • 0028168285 scopus 로고
    • Crystallographic studies of savinase, a subtilisin-like proteinase, at pH 10.5
    • Lange G., Betzel C., Branner S., Wilson K.S. Crystallographic studies of savinase, a subtilisin-like proteinase, at pH 10.5. Eur. J. Biochem. 224:1994;507-518
    • (1994) Eur. J. Biochem. , vol.224 , pp. 507-518
    • Lange, G.1    Betzel, C.2    Branner, S.3    Wilson, K.S.4
  • 26
    • 0025871717 scopus 로고
    • Neutral imidazole is the electrophile in the reaction catalyzed by triosephosphate isomerase: Structural origins and catalytic implications
    • Lodi P.J., Knowles J.R. Neutral imidazole is the electrophile in the reaction catalyzed by triosephosphate isomerase structural origins and catalytic implications. Biochemistry. 30:1991;6948-6956
    • (1991) Biochemistry , vol.30 , pp. 6948-6956
    • Lodi, P.J.1    Knowles, J.R.2
  • 28
    • 0030991899 scopus 로고    scopus 로고
    • Roles of histidine 31 and tryptophan 34 in the structure, self-association, and folding of murine interleukin-6
    • Matthews J.M., Ward L.D., Hammacher A., Norton R.S., Simpson R.J. Roles of histidine 31 and tryptophan 34 in the structure, self-association, and folding of murine interleukin-6. Biochemistry. 36:1997;6187-6196
    • (1997) Biochemistry , vol.36 , pp. 6187-6196
    • Matthews, J.M.1    Ward, L.D.2    Hammacher, A.3    Norton, R.S.4    Simpson, R.J.5
  • 29
    • 0025608001 scopus 로고
    • Structure, multiple site binding, and segmental accommodation in thymidylate synthase on binding dUMP and an anti-folate
    • (published erratum appears in) Biochemistry. 29:1990;6964-6977
    • Montfort W.R., Perry K.M., Fauman E.B., Finer-Moore J.S., Maley G.F., Hardy L., Maley F., Stroud R.M. Structure, multiple site binding, and segmental accommodation in thymidylate synthase on binding dUMP and an anti-folate. (published erratum appears in) Biochemistry. 29:1990;6964-6977 Biochemistry. 29:1990;10864
    • (1990) Biochemistry , vol.29 , pp. 10864
    • Montfort, W.R.1    Perry, K.M.2    Fauman, E.B.3    Finer-Moore, J.S.4    Maley, G.F.5    Hardy, L.6    Maley, F.7    Stroud, R.M.8
  • 30
    • 0030580073 scopus 로고    scopus 로고
    • Glycinamide ribonucleotide transformylase undergoes pH-dependent dimerization
    • Mullen C.A., Jennings P.A. Glycinamide ribonucleotide transformylase undergoes pH-dependent dimerization. J. Mol. Biol. 262:1996;746-755
    • (1996) J. Mol. Biol. , vol.262 , pp. 746-755
    • Mullen, C.A.1    Jennings, P.A.2
  • 31
    • 0032489429 scopus 로고    scopus 로고
    • A single mutatation disrupts the pH-dependent dimerization of glycinamide ribonucleotide transformylase
    • Mullen C.A., Jennings P.A. A single mutatation disrupts the pH-dependent dimerization of glycinamide ribonucleotide transformylase. J. Mol. Biol. 276:1998;819-827
    • (1998) J. Mol. Biol. , vol.276 , pp. 819-827
    • Mullen, C.A.1    Jennings, P.A.2
  • 32
    • 0030904568 scopus 로고    scopus 로고
    • A direct comparison of helix propensity in proteins and peptides
    • Myers J.K., Pace C.N., Scholtz J.M. A direct comparison of helix propensity in proteins and peptides. Proc. Natl Acad. Sci. USA. 94:1997;2833-2837
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 2833-2837
    • Myers, J.K.1    Pace, C.N.2    Scholtz, J.M.3
  • 33
    • 84920325457 scopus 로고
    • AMoRe: An automated package for molecular replacement
    • Navaza J. AMoRe an automated package for molecular replacement. Acta Crystallog. sect. A. 50:1994;157-163
    • (1994) Acta Crystallog. Sect. a , vol.50 , pp. 157-163
    • Navaza, J.1
  • 35
    • 0016853253 scopus 로고
    • Protein crystallography at sub-zero temperatures: Cryo-protective mother liquors for protein crystals
    • Petsko G.A. Protein crystallography at sub-zero temperatures cryo-protective mother liquors for protein crystals. J. Mol. Biol. 96:1975;381-392
    • (1975) J. Mol. Biol. , vol.96 , pp. 381-392
    • Petsko, G.A.1
  • 37
    • 0030877587 scopus 로고    scopus 로고
    • Conformational substates in enzyme mechanism: The 120 K structure of alpha-lytic protease at 1.5 Å resolution
    • Rader S.D., Agard D.A. Conformational substates in enzyme mechanism the 120 K structure of alpha-lytic protease at 1.5 Å resolution. Protein Sci. 6:1997;1375-1386
    • (1997) Protein Sci. , vol.6 , pp. 1375-1386
    • Rader, S.D.1    Agard, D.A.2
  • 39
    • 0021813844 scopus 로고
    • Synsthesis of the antileukemic agents 5,10-dideaza-aminopterin and 5.10-dideaza-5,6,7,8-tetrahydroaminopterin
    • Taylor E.C., Harrington P.J., Fletcher S.R., Beardsley G.P., Moran R.G. Synsthesis of the antileukemic agents 5,10-dideaza-aminopterin and 5.10-dideaza-5,6,7,8-tetrahydroaminopterin. J. Med. Chem. 78:1985;914-921.3
    • (1985) J. Med. Chem. , vol.78 , pp. 914-9213
    • Taylor, E.C.1    Harrington, P.J.2    Fletcher, S.R.3    Beardsley, G.P.4    Moran, R.G.5
  • 40
    • 0000434996 scopus 로고
    • Mounting of crystals for macromolecular crystallography in a free-standing thin film
    • Teng T.Y. Mounting of crystals for macromolecular crystallography in a free-standing thin film. J. Appl. Crystallog. 23:1990;287-391
    • (1990) J. Appl. Crystallog. , vol.23 , pp. 287-391
    • Teng, T.Y.1
  • 41
    • 0030612614 scopus 로고    scopus 로고
    • achanges in a protein tyrosine phosphatase: Experimental and theoretical determination of electrostatic properties in a small protein
    • achanges in a protein tyrosine phosphatase experimental and theoretical determination of electrostatic properties in a small protein. Biochemistry. 36:1997;11984-11994
    • (1997) Biochemistry , vol.36 , pp. 11984-11994
    • Tishmack, P.A.1    Bashford, D.2    Harms, E.3    Van Etten, R.L.4
  • 42
    • 15144340856 scopus 로고    scopus 로고
    • Protein structure-based design, synthesis, and biological evaluation of 5-thia-2,6-diamino-4(3H)-oxopyrimidines: Potent inhibitors of glycinamide ribonucleotide transformylase with potent cell growth inhibition
    • Varney M.D., Palmer C.L., Romines W.H. 3rd, Boritzki T., Margosiak S.A., Almassy R., Janson C.A., Bartlett C., Howland E.J., Ferre R. Protein structure-based design, synthesis, and biological evaluation of 5-thia-2,6-diamino-4(3H)-oxopyrimidines potent inhibitors of glycinamide ribonucleotide transformylase with potent cell growth inhibition. J. Med. Chem. 40:1997;2502-2534
    • (1997) J. Med. Chem. , vol.40 , pp. 2502-2534
    • Varney, M.D.1    Palmer, C.L.2    Romines III, W.H.3    Boritzki, T.4    Margosiak, S.A.5    Almassy, R.6    Janson, C.A.7    Bartlett, C.8    Howland, E.J.9    Ferre, R.10
  • 43
    • 0030016226 scopus 로고    scopus 로고
    • A rapid screen of active site mutants in glycinamide ribonucleotide transformylase
    • Warren M.S., Marolewski A.E., Benkovic S.J. A rapid screen of active site mutants in glycinamide ribonucleotide transformylase. Biochemistry. 35:1996;8855-8862
    • (1996) Biochemistry , vol.35 , pp. 8855-8862
    • Warren, M.S.1    Marolewski, A.E.2    Benkovic, S.J.3
  • 44
    • 0028013478 scopus 로고
    • Thermal expansion of hen egg-white lysozyme. Comparison of the 1.9 Å resolution structures of the tetragonal form of the enzyme at 100 K and 298 K
    • Young A.C., Tilton R.F., Dewan J.C. Thermal expansion of hen egg-white lysozyme. Comparison of the 1.9 Å resolution structures of the tetragonal form of the enzyme at 100 K and 298 K. J. Mol. Biol. 235:1994;302-317
    • (1994) J. Mol. Biol. , vol.235 , pp. 302-317
    • Young, A.C.1    Tilton, R.F.2    Dewan, J.C.3


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