Mitochondrial cytochromes c: A comparative analysis

Journal of Biological Inorganic Chemistry

Volumn 4, Issue 6, 1999, Pages 824-837

  Banci, L ^a   Bertini, I ^a   Rosato, A ^a   Varani, G ^b  

^a UNIVERSITY OF FLORENCE   (Italy)

^b MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

Author keywords

Cytochrome c; Electron transfer; Structure

Indexed keywords

CARRIER PROTEIN; CYTOCHROME C; HEME; MITOCHONDRIAL ENZYME;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CONTROLLED STUDY; ELECTRON TRANSPORT; ENZYME ACTIVITY; ENZYME CONFORMATION; HUMAN; HYDROPHOBICITY; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; SURFACE CHARGE;

AMINO ACID SEQUENCE; ANIMALS; CYTOCHROME C GROUP; ELECTROSTATICS; HUMANS; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; SEQUENCE HOMOLOGY, AMINO ACID;

EUKARYOTA;

EID: 0032739830     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007750050356     Document Type: Article

References (87)

1. Pascher T, Chesick JP, Winkler JR, Gray HB (1996) Science 271:1558-1560
2. Scott RA, Mauk AG (eds) (1996) Cytochrome c. A multidisciplinary approach. University Science Books, Sausalito, Calif
3. Kluck RM, Bossy-Wetzel E, Green DR, Newmeyer DD (1997) Science 275:1132-1136
4. Yang C-H, Azad HR, Cooksey DA (1996) Proc Natl Acad Sci USA 93:7315-7320
5. Yeoman KH, Delgado MJ, Wexler M, Downie JA, Johnston AWB (1997) Microbiology 143:127-134
6. Biel SW, Biel AJ (1990) J Bacteriol 172:1321-1326
7. Fitch WM (1976) J Mol Evol 8:13-10
8. Mathews FS (1985) Prog Biophys Mol Biol 45:1-56
9. Hampsey DM, Das G, Sherman F (1988) FEBS Lett 231:275-283
10. Moore GR, Pettigrew GW (1990) Cytochromes c; evolutionary, structural and physicochemical aspects. Springer, Berlin Heidelberg New York
11. Brayer GD, Murphy MEP (1996) In: Scott RA, Mauk AG (eds) Cytochrome c. A multidisciplinary approach. University Science Books, Sausalito, Calif, pp 103-166
12. Chothia C, Lesk AM (1985) J Mol Biol 182:151-158
13. Qi PX, Di Stefano DL, Wand AJ (1994) Biochemistry 33:6408-6417
14. Qi PX, Beckman RA, Wand AJ (1996) Biochemistry 35:12275-12286
15. Baistrocchi P, Banci L, Bertini I, Turano P, Bren KL, Gray HB (1996) Biochemistry 35:13788-13796
16. Banci L, Bertini I, Gray HB, Luchinat C, Reddig T, Rosato A, Turano P (1997) Biochemistry 36:9867-9877
17. Banci L, Bertini I, Bren KL, Gray HB, Sompornpisut P, Turano P (1997) Biochemistry 36:8992-9001
18. Banci L, Bertini I, Huber JG, Spyroulias GA, Turano P (1999) JBIC 4:21-31
19. Marmorino JL, Auld DS, Betz DS, Doyle DF, Young GB, Pielak GJ (1993) Protein Sci 2:1966-1974
20. Bai YW, Sosnick TR, Mayne L, Englander SW (1995) Science 269:192-197
21. Milne JS, Mayne L, Roder H, Wand AJ, Englander SW (1998) Protein Sci 7:739-745
22. Baxter SM, Fetrow JS (1999) Biochemistry 38:4480-4492
23. Baxter SM, Fetrow JS (1999) Biochemistry 38:4493-4503
24. Altschul FS, Madden TL, Schaeffer A, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Nucleic Acids Res 25:3389-3402
25. Thompson JD, Higgins DG, Gibson TJ (1994) Nucleic Acids Res 22:4673-4680
26. Sali A, Blundell TL (1993) J Mol Biol 234:779-515
27. Pearlman DA, Case DA, Caldwell JW, Ross WS, Cheatham TE, Ferguson DM, Seibel GL, Singh UC, Weiner PK, Kollman PA (1997) AMBER 5.0. University of California, San Francisco
28. Banci L, Gori Savellini G, Turano P (1997) Eur J Biochem 249:716-723
29. Tsukihara T, Aoyama H, Yamashita E, Tomizaki T, Yamaguchi H, Shinzawa-Itoh K, Nakashima R, Yaono R, Yoshikawa S (1996) Science 272:1136-1144
30. Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993) J Appl Crystallogr 26:283-291
31. Koradi R, Billeter M, Wüthrich K (1996) J Mol Graphics 14:51-55
32. Dickerson RE, Takano T, Eisenberg D, Kallai OB, Samson L, Cooper A, Margoliash E (1971) J Biol Chem 246:1511-1535
33. Ashida T, Yamane T, Tsukihara T, Kakudo M (1973) J Biochem (Tokyo) 73:463
34. Takano T, Dickerson RE (1981) J Mol Biol 153:79-94
35. Takano T, Dickerson RE (1981) J Mol Biol 153:95-155
36. Ochi H, Hata Y, Tanaka N, Kakudo M, Sakuri T, Achara S, Morita Y (1983) J Mol Biol 166:407-418
37. Louie GV, Hutcheon WLB, Brayer GD (1988) J Mol Biol 199:295-314
38. Bushnell GW, Louie GV, Brayer GD (1990) J Mol Biol 214:585-595
39. Louie GV, Brayer GD (1990) J Mol Biol 214:527-555
40. Berghuis AM, Brayer GD (1992) J Mol Biol 223:959-976
41. Sanishvili R, Volz KW, Westbrook EM, Margoliash E (1995) Structure 3:707-716
42. Bertini I, Luchinat C, Rosato A (1996) Prog Biophys Mol Biol 66:43-80
43. Banci L, Bertini I, Luchinat C, Turano P (1999) In: Kadish KM, Smith KM, Guilard R (eds) The porphyrin handbook. Academic Press, Burlington, Mass (in press)
44. Brems DN, Cass R, Stellwagen E (1982) Biochemistry 21:1488-1493
45. Rodionov MA, Blundell TL (1998) Proteins Struct Funct Genet 33:358-366
46. Pelletier H, Kraut J (1992) Science 258:1748-1755
47. Butler J, Davies DM, Sykes AG (1980) J Am Chem Soc 103:469-471
48. Rieder R, Bosshard HR (1980) J Biol Chem 255:4732-4739
49. Armstrong GD, Chapman SK, Sisley MJ, Sykes AG, Aitken A, Osheroff N, Margoliash E (1986) Biochemistry 25:6947-6951
50. Moench S, Satterlee JD, Erman JE (1987) Biochemistry 26:3821-3826
51. Pappa HS, Poulos TL (1995) Biochemistry 34:6573-6580
52. Pappa HS, Tajbaksh S, Saunders AJ, Pielak GJ, Poulos TL (1996) Biochemistry 35:4837-4845
53. Yi Q, Erman JE, Satterlee JD (1994) Biochemistry 33:12032-12041
54. Guiles RD, Sarma S, DiGate RJ, Banville D, Basus VJ, Kuntz ID, Waskell L (1996) Nat Struct Biol 3:333-339
55. Sukits SF, Erman JE, Satterlee JD (1997) Biochemistry 36:5251-5259
56. Ubbink M, Bendall DS (1997) Biochemistry 36:6326-6335
57. Moore GR, Cox MC, Crowe D, Osborne MJ, Rosell FI, Bujons J, Barker PD, Mauk MR, Mauk AG (1998) Biochem J332:449
58. Gray HB, Ellis WR Jr (1994) In: Bertini I, Gray HB, Lippard SJ, Valentine JS (eds) Bioinorganic chemistry. University Science Books, Mill Valley, Calif, pp 315-364
59. Michel B, Proudfoot AEI, Wallace CJA, Bosshard HR (1989) Biochemistry 28:456-462
60. Lappalainen P, Watmough NJ, Greenwood C, Saraste M (1995) Biochemistry 34:5824-5830
61. Millett F, de Jong C, Paulson L, Capaldi RA (1983) Biochemistry 22:546-552
62. Witt H, Malatesta F, Nicoletti F, Brunori M, Ludwig B (1998) Eur J Biochem 251:367-373
63. Dill KA (1990) Biochemistry 29:7133-7155
64. Auld DS, Pielak GJ (1991) Biochemistry 30:8684-8690
65. Fredericks ZL, Pielak GJ (1993) Biochemistry 32:929-936
66. Pielak GJ, Auld DS, Beasley JR, Betz SF, Cohen DS, Doyle DF, Finger SA, Fredericks ZL, Hilgen-Willis S, Saunders AJ (1995) Biochemistry 34:3268-3276
67. Beasley JR, Pielak GJ (1996) Proteins 26:95-107
68. Colon W, Elöve GA, Wakem LP, Sherman F, Roder H (1996) Biochemistry 35:5538-5549
69. Colon W, Wakem LP, Sherman F, Roder H (1997) Biochemistry 36:12535-12541
70. Hammack B, Godbole S, Bowler BE (1998) J Mol Biol 275:719-724
71. Sauder JM, Roder H (1998) Fold Des 3:293-301
72. Marmorino JL, Pielak GJ (1995) Biochemistry 34:3140-3143
73. Marmorino JL, Lehti M, Pielak GJ (1998) J Mol Biol 275:379-388
74. Hostetter DR, Weatherly GT, Beasley JR, Bortone K, Cohen DS, Finger SA, Hardwidge P, Kakouras DS, Saunders AJ, Trojak SK, Waldner JC, Pielak GJ (1999) J Mol Biol 289:639-644
75. Jentzen W, Ma J-G, Shelnutt JA (1998) Biophys J 74:753-763
76. Banci L, Rosato A, Turano P (1996) JBIC 1:364-367
77. Banci L, Bertini I, De la Rosa MA, Koulougliotis D, Navarro JA, Walter O (1998) Biochemistry 37:4831-4843
78. Winkler JR, Gray HB (1992) Chem Rev 92:369-379
79. Brautigan DL, Feinberg BA, Hoffman BM, Margoliash E, Peisach J, Blumberg WE (1977) J Biol Chem 252:574-582
80. Angström J, Moore GM, Williams RJP (1982) Biochim Biophys Acta 703:87-94
81. Hong X, Dixon DW (1989) FEBS Lett 246:105-108
82. Pearce LL, Gartner AL, Smith M, Mauk AG (1989) Biochemistry 28:;3156
83. Battistuzzi G, Borsari M, Sola M, Francia F (1997) Biochemistry 36:16247-16258
84. Battistuzzi G, Borsari M, Cowan JA, Eicken C, Loschi L, Sola M (1999) Biochemistry 38:5553-5562
85. Ferrer JC, Guillemette JG, Bogumil R, Inglis SC, Smith M, Mauk AG (1993) J Am Chem Soc 115:7507-7508
86. Taler G, Schejter A, Navon G, Vig I, Margoliash E (1995) Biochemistry 34:14209-14212
87. Banci L, Bertini I, Spyroulias GA, Turano P (1998) Eur J Inorg Chem 1:583-591