Duplication of primate and rodent B7-H3 immunoglobulin V- and C-like domains: Divergent history of functional redundancy and exon loss

Genomics

Volumn 82, Issue 3, 2003, Pages 365-377

  Ling, Vincent ^a,b   Wu, Paul W ^a   Spaulding, Vikki ^a   Kieleczawa, Jan ^a   Luxenberg, Deborah ^a   Carreno, Beatriz M ^a   Collins, Mary ^a  

^a PFIZER INC   (United States)

^b Molecular Biology and Genetics   (United States)

Author keywords

B7; Costimulation; Immune modulation; Immunoglobulin variable domain

Indexed keywords

CD4 ANTIGEN; COMPLEMENTARY DNA; CYTOKINE; IMMUNOGLOBULIN; ISOPROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CELL PROLIFERATION; CONTROLLED STUDY; CYTOKINE PRODUCTION; DOWN REGULATION; EXON; GENOME; HAMSTER; HUMAN; MOLECULAR DYNAMICS; MONKEY; MOUSE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIMATE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; RODENT; T LYMPHOCYTE;

CRICETINAE; PRIMATES; RODENTIA;

EID: 0043123303     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0888-7543(03)00126-5     Document Type: Article

References (32)

1. Sharpe A.H., Freeman G.J. The B7-CD28 superfamily. Nat. Rev. Immunol. 2:2002;116-126.
2. Carreno B.M., Collins M. The B7 family of ligands and its receptors new pathways for costimulation and inhibition of immune responses . Annu. Rev. Immunol. 20:2002;29-53.
3. Chapoval A.I., Ni J., Lau J.S., Wilcox R.A., Flies D.B., Liu D., Dong H., Sica G.L., Zhu G., Tamada K., Chen L. B7-H3 a costimulatory molecule for T cell activation and IFN-gamma production . Nat. Immunol. 2:2001;269-274.
4. Sun M., Richards S., Prasad D.V., Mai X.M., Rudensky A., Dong C. Characterization of mouse and human B7-H3 genes. J. Immunol. 168:2002;6294-6297.
5. Ling V., Wu P.W., Miyashiro J.S., Marusic S., Finnerty H.F., Collins M. Differential expression of inducible costimulator-ligand splice variants lymphoid regulation of mouse GL50-B and human GL50 molecules . J. Immunol. 166:2001;7300-7308.
6. Ling V., Wu P.W., Finnerty H.F., Sharpe A.H., Gray G.S., Collins M. Complete sequence determination of the mouse and human CTLA4 gene loci cross-species DNA sequence similarity beyond exon borders . Genomics. 60:1999;341-355.
7. Li W.H., Wu C.I., Luo C.C. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2:1985;150-174.
8. Li W.H. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36:1993;96-99.
9. Pamilo P., Bianchi N.O. Evolution of the Zfx and Zfy genes rates and interdependence between the genes . Mol. Biol. Evol. 10:1993;271-281.
10. Ranganath S., Ouyang W., Bhattarcharya D., Sha W.C., Grupe A., Peltz G., Murphy K.M. GATA-3-dependent enhancer activity in IL-4 gene regulation. J. Immunol. 161:1998;3822-3826.
11. Carter L., Fouser L.A., Jussif J., Fitz L., Deng B., Wood C.R., Collins M., Honjo T., Freeman G.J., Carreno B.M. PD-1 PD-L inhibitory pathway affects both CD4(+) and CD8(+) T cells and is overcome by IL-2 . Eur. J. Immunol. 32:2002;634-643.
12. Anderson D.E., Bieganowska K.D., Bar-Or A., Oliveira E.M., Carreno B., Collins M., Hafler D.A. Paradoxical inhibition of T-cell function in response to CTLA-4 blockade; heterogeneity within the human T-cell population. Nat. Med. 6:2000;211-214.
13. Blair P.J., Riley J.L., Levine B.L., Lee K.P., Craighead N., Francomano T., Perfetto S.J., Gray G.S., Carreno B.M., June C.H. CTLA-4 ligation delivers a unique signal to resting human CD4 T cells that inhibits interleukin-2 secretion but allows Bcl-X(L) induction. J. Immunol. 160:1998;12-15.
14. Ling V., Wu P.W., Finnerty H.F., Bean K.M., Spaulding V., Fouser L.A., Leonard J.P., Hunter S.E., Zollner R., Thomas J.L., Miyashiro J.S., Jacobs K.A., Collins M. Cutting edge identification of GL50, a novel B7-like protein that functionally binds to ICOS receptor . J. Immunol. 164:2000;1653-1657.
15. Bennett F., Luxenberg D., Ling V., Wang I.M., Marquette K., Lowe D., Khan N., Veldman G., Jacobs K.A., Valge-Archer V.E., Collins M., Carreno B.M. Program Death-1 engagement upon TCR activation has distinct effects on costimulation and cytokine-driven proliferation Attenuation of ICOS, IL-4, and IL-21, but not CD28, IL-7, and IL-15 responses . J. Immunol. 170:2003;711-718.
16. Ostrov D.A., Shi W., Schwartz J.C., Almo S.C., Nathenson S.G. Structure of murine CTLA-4 and its role in modulating T cell responsiveness. Science. 290:2000;816-819.
17. Chapoval A.I., Tamada K., Chen L. In vitro growth inhibition of a broad spectrum of tumor cell lines by activated human dendritic cells. Blood. 95:2000;2346-2351.
18. Griffin M.D., Hong D.K., Holman P.O., Lee K.M., Whitters M.J., O'Herrin S.M., Fallarino F., Collins M., Segal D.M., Gajewski T.F., Kranz D.M., Bluestone J.A. Blockade of T cell activation using a surface-linked single-chain antibody to CTLA-4 (CD152). J. Immunol. 164:2000;4433-4442.
19. Nei M., Xu P., Glazko G. Estimation of divergence times from multiprotein sequences for a few mammalian species and several distantly related organisms. Proc. Natl. Acad. Sci. USA. 98:2001;2497-2502.
20. Hughes A.L., Nei M. Evolution of the major histocompatibility complex Independent origin of nonclassical class I genes in different groups of mammals . Mol. Biol. Evol. 6:1989;559-579.
21. Sitnikova T., Nei M. Evolution of immunoglobulin kappa chain variable region genes in vertebrates. Mol. Biol. Evol. 15:1998;50-60.
22. Hayashi C.Y., Lewis R.V. Molecular architecture and evolution of a modular spider silk protein gene. Science. 287:2000;1477-1479.
23. Hayashi C.Y., Lewis R.V. Spider flagelliform silk lessons in protein design, gene structure, and molecular evolution . Bioessays. 23:2001;750-756.
24. Hill R.E., Hastie N.D. Accelerated evolution in the reactive centre regions of serine protease inhibitors. Nature. 326:1987;96-99.
25. Ngai J., Dowling M.M., Buck L., Axel R., Chess A. The family of genes encoding odorant receptors in the channel catfish. Cell. 72:1993;657-666.
26. Tanaka T., Nei M. Positive Darwinian selection observed at the variable-region genes of immunoglobulins. Mol. Biol. Evol. 6:1989;447-459.
27. Ling V., Wu P.W., Finnerty H.F., Agostino M.J., Graham J.R., Chen S., Jussiff J.M., Fisk G.J., Miller C.P., Collins M. Assembly and annotation of human chromosome 2q33 sequence containing the CD28, CTLA4, and ICOS gene cluster Analysis by computational, comparative, and microarray approaches . Genomics. 78:2001;155-168.
28. Johnson M.E., Viggiano L., Bailey J.A., Abdul-Rauf M., Goodwin G., Rocchi M., Eichler E.E. Positive selection of a gene family during the emergence of humans and African apes. Nature. 413:2001;514-519.
29. Samonte R.V., Eichler E.E. Segmental duplications and the evolution of the primate genome. Nat. Rev. Genet. 3:2002;65-72.
30. Bailey J.A., Gu Z., Clark R.A., Reinert K., Samonte R.V., Schwartz S., Adams M.D., Myers E.W., Li P.W., Eichler E.E. Recent segmental duplications in the human genome. Science. 297:2002;1003-1007.
31. Trowsdale J., Barten R., Haude A., Stewart C.A., Beck S., Wilson M.J. The genomic context of natural killer receptor extended gene families. Immunol. Rev. 181:2001;20-38.
32. Mager D.L., McQueen K.L., Wee V., Freeman J.D. Evolution of natural killer cell receptors coexistence of functional Ly49 and KIR genes in baboons . Curr. Biol. 11:2001;626-630.