메뉴 건너뛰기




Volumn 52, Issue 3, 2003, Pages 427-435

A template search reveals mechanistic similarities and differences in β-ketoacyl synthases (KAS) and related enzymes

Author keywords

3D templates; Active site residues; Enzyme catalysis; Fatty acid biosynthesis

Indexed keywords

3 OXOACYL ACYL CARRIER PROTEIN SYNTHASE; ACETYL COENZYME A ACYLTRANSFERASE; CHALCONE SYNTHASE; CYSTEINE; HISTIDINE;

EID: 0042672952     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.10421     Document Type: Article
Times cited : (13)

References (30)
  • 2
    • 0034887171 scopus 로고    scopus 로고
    • Polyketide biosynthesis: A millennium review
    • Staunton J, Weissman KJ. Polyketide biosynthesis: a millennium review. Nat Prod Rep 2001;18:380-416.
    • (2001) Nat Prod Rep , vol.18 , pp. 380-416
    • Staunton, J.1    Weissman, K.J.2
  • 3
    • 0002901362 scopus 로고    scopus 로고
    • The chemistry and biology of fatty acid, polyketide and nonribosomal peptide synthesis
    • Carreras CW, Pieper R, Khosla C. The chemistry and biology of fatty acid, polyketide and nonribosomal peptide synthesis. Top Curr Chem 1997;188:85-126.
    • (1997) Top Curr Chem , vol.188 , pp. 85-126
    • Carreras, C.W.1    Pieper, R.2    Khosla, C.3
  • 5
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995;247:536-540.
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 6
    • 0037177237 scopus 로고    scopus 로고
    • Homologous (β/α)8-barrel enzymes that catalyze unrelated reactions: Orotidine 5′-monophosphate decarboxylase and 3-keto-L-gulonate 6-phosphate decarboxylase
    • Wise E, Yew WS, Babbitt PC, Gerlt JA, Rayment I. Homologous (β/α)8-barrel enzymes that catalyze unrelated reactions: orotidine 5′-monophosphate decarboxylase and 3-keto-L-gulonate 6-phosphate decarboxylase. Biochem 2002;41:3861-3869
    • (2002) Biochem , vol.41 , pp. 3861-3869
    • Wise, E.1    Yew, W.S.2    Babbitt, P.C.3    Gerlt, J.A.4    Rayment, I.5
  • 7
    • 0029973830 scopus 로고    scopus 로고
    • Derivation of 3D coordinate templates for searching structural databases: Application to Ser-His-Asp catalytic triads in the serine proteases and lipases
    • Wallace AC, Laskowski RA, Thornton JM. Derivation of 3D coordinate templates for searching structural databases: Application to Ser-His-Asp catalytic triads in the serine proteases and lipases. Prot Sci 1996;5:1001-1013.
    • (1996) Prot Sci , vol.5 , pp. 1001-1013
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 10
    • 0035910286 scopus 로고    scopus 로고
    • The crystal structure of β-ketoacyl-acyl carrier protein synthase II from Synechocystis sp. at 1.54 Å resolution and its relationship to other condensing enzymes
    • Moche M, Dehesh K, Edwards P, Lindqvist Y. The crystal structure of β-ketoacyl-acyl carrier protein synthase II from Synechocystis sp. at 1.54 Å resolution and its relationship to other condensing enzymes. J Mol Biol 2001;305:491-503.
    • (2001) J Mol Biol , vol.305 , pp. 491-503
    • Moche, M.1    Dehesh, K.2    Edwards, P.3    Lindqvist, Y.4
  • 11
    • 0001768101 scopus 로고
    • Conserved residues in condensing enzyme domains of fatty acid synthases and related sequences
    • Siggaard-Andersen M. Conserved residues in condensing enzyme domains of fatty acid synthases and related sequences. Prot Seq Data Anal 1993;5:325-335.
    • (1993) Prot Seq Data Anal , vol.5 , pp. 325-335
    • Siggaard-Andersen, M.1
  • 12
    • 0030724039 scopus 로고    scopus 로고
    • TESS: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites
    • Wallace AC, Borkakoti N, Thornton JM. TESS: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites. Prot Sci 1997;6:2308-2323.
    • (1997) Prot Sci , vol.6 , pp. 2308-2323
    • Wallace, A.C.1    Borkakoti, N.2    Thornton, J.M.3
  • 13
    • 0033613813 scopus 로고    scopus 로고
    • Recognition of spatial motifs in protein structures
    • Kleywegt GJ. Recognition of spatial motifs in protein structures. J Mol Biol 1999;285:1887-1897.
    • (1999) J Mol Biol , vol.285 , pp. 1887-1897
    • Kleywegt, G.J.1
  • 16
    • 0031592777 scopus 로고    scopus 로고
    • The 1.8 Å crystal structure of the dimeric peroxisomal 3-ketoacyl-CoA thiolase of Saccharomyces cerevisiae: Implications for substrate binding and reaction mechanism
    • Mathieu M, Modis Y, Zeelen JP, Engel CK, Abagyan RA, Ahlberg A, Rasmussen B, Lamzin VS, Kunau WH, Wierenga RK. The 1.8 Å crystal structure of the dimeric peroxisomal 3-ketoacyl-CoA thiolase of Saccharomyces cerevisiae: implications for substrate binding and reaction mechanism. J Mol Biol 1997;273:714-728.
    • (1997) J Mol Biol , vol.273 , pp. 714-728
    • Mathieu, M.1    Modis, Y.2    Zeelen, J.P.3    Engel, C.K.4    Abagyan, R.A.5    Ahlberg, A.6    Rasmussen, B.7    Lamzin, V.S.8    Kunau, W.H.9    Wierenga, R.K.10
  • 17
    • 0034620559 scopus 로고    scopus 로고
    • Dissection of malonyl-coenzyme A decarboxylation from polyketide formation in the reaction mechanism of a plant polyketide synthase
    • Jez JM, Ferrer J-L, Bowman ME, Dixon RA, Noel JP. Dissection of malonyl-coenzyme A decarboxylation from polyketide formation in the reaction mechanism of a plant polyketide synthase. Biochemistry 2000;39:890-902.
    • (2000) Biochemistry , vol.39 , pp. 890-902
    • Jez, J.M.1    Ferrer, J.-L.2    Bowman, M.E.3    Dixon, R.A.4    Noel, J.P.5
  • 19
    • 0032473567 scopus 로고    scopus 로고
    • Crystal structure of β-ketoacyl-acyl carrier protein synthase II from E. coli reveals the molecular architecture of condensing enzymes
    • Huang W, Jia J, Edwards P, Dehesh K, Schneider G, Lindqvist Y. Crystal structure of β-ketoacyl-acyl carrier protein synthase II from E. coli reveals the molecular architecture of condensing enzymes. EMBO J 1998;17:1183-1191.
    • (1998) EMBO J , vol.17 , pp. 1183-1191
    • Huang, W.1    Jia, J.2    Edwards, P.3    Dehesh, K.4    Schneider, G.5    Lindqvist, Y.6
  • 20
    • 0035085234 scopus 로고    scopus 로고
    • Structures of β-ketoacyl-acyl carrier protein synthase I complexed with fatty acids elucidate its catalytic machinery
    • Olsen JG, Kadziola A, von Wettstein-Knowles P, Siggaard-Andersen M, Larsen S. Structures of β-ketoacyl-acyl carrier protein synthase I complexed with fatty acids elucidate its catalytic machinery. Structure 2001;9:233-243.
    • (2001) Structure , vol.9 , pp. 233-243
    • Olsen, J.G.1    Kadziola, A.2    Von Wettstein-Knowles, P.3    Siggaard-Andersen, M.4    Larsen, S.5
  • 21
    • 0035928728 scopus 로고    scopus 로고
    • β-ketoacyl-[acyl carrier protein] synthase I of Escherichia coli: Aspects of the condensation mechanism revealed by analyses of mutations in the active site pocket
    • McGuire KA, Siggaard-Andersen M, Bangera MG, Olsen JG, von Wettstein-Knowles P. β-Ketoacyl-[acyl carrier protein] synthase I of Escherichia coli: aspects of the condensation mechanism revealed by analyses of mutations in the active site pocket. Biochemistry 2001;40:9836-9845.
    • (2001) Biochemistry , vol.40 , pp. 9836-9845
    • McGuire, K.A.1    Siggaard-Andersen, M.2    Bangera, M.G.3    Olsen, J.G.4    Von Wettstein-Knowles, P.5
  • 22
    • 0034651317 scopus 로고    scopus 로고
    • The 1.8 Å crystal structure and active-site architecture of β-ketoacyl-acyl carrier protein synthase III (FabH) from Escherichia coli
    • Davies C, Heath RJ, White SW, Rock CO. The 1.8 Å crystal structure and active-site architecture of β-ketoacyl-acyl carrier protein synthase III (FabH) from Escherichia coli. Structure 2000;8:185-195.
    • (2000) Structure , vol.8 , pp. 185-195
    • Davies, C.1    Heath, R.J.2    White, S.W.3    Rock, C.O.4
  • 23
    • 0034646566 scopus 로고    scopus 로고
    • Crystallographic analysis of the reaction pathway of Zoogloea ramigera biosynthetic thiolase
    • Modis Y, Wierenga RK. Crystallographic analysis of the reaction pathway of Zoogloea ramigera biosynthetic thiolase. J Mol Biol 2000;297:1171-1182.
    • (2000) J Mol Biol , vol.297 , pp. 1171-1182
    • Modis, Y.1    Wierenga, R.K.2
  • 25
    • 0009567108 scopus 로고    scopus 로고
    • Peptidases: A view of classification and nomenclature
    • Turk V, editor. Basel: Birkhaüser Verlag
    • Barrett AJ. Peptidases: a view of classification and nomenclature. In: Turk V, editor. Proteases: new perspectives. Basel: Birkhaüser Verlag; 1999. p 1-12.
    • (1999) Proteases: New Perspectives , pp. 1-12
    • Barrett, A.J.1
  • 26
    • 13044313466 scopus 로고    scopus 로고
    • The structure of carbamoyl phosphate synthetase determined to 2.1 Å resolution
    • Thoden JB, Raushel FM, Benning MM, Rayment I, Holden HM. The structure of carbamoyl phosphate synthetase determined to 2.1 Å resolution. Acta Cryst 1999;D55:8-24.
    • (1999) Acta Cryst , vol.D55 , pp. 8-24
    • Thoden, J.B.1    Raushel, F.M.2    Benning, M.M.3    Rayment, I.4    Holden, H.M.5
  • 28
    • 0035815113 scopus 로고    scopus 로고
    • Evolution of function in protein superfamilies, from a structural perspective
    • Todd AE, Orengo CA, Thornton JM. Evolution of function in protein superfamilies, from a structural perspective. J Mol Biol 2001;307:1113-1143.
    • (2001) J Mol Biol , vol.307 , pp. 1113-1143
    • Todd, A.E.1    Orengo, C.A.2    Thornton, J.M.3
  • 29
    • 0036776124 scopus 로고    scopus 로고
    • Sequence and structural differences between enzyme and non-enzyme homologues
    • Todd AE, Orengo, CA, Thornton, JM. Sequence and structural differences between enzyme and non-enzyme homologues. Structure 2002;10:1435-1451.
    • (2002) Structure , vol.10 , pp. 1435-1451
    • Todd, A.E.1    Orengo, C.A.2    Thornton, J.M.3
  • 30
    • 0036683309 scopus 로고    scopus 로고
    • Plasticity of enzyme active sites
    • Todd AE, Orengo, CA, Thornton, JM. Plasticity of enzyme active sites TIBS 2002;27;419-426.
    • (2002) TIBS , vol.27 , pp. 419-426
    • Todd, A.E.1    Orengo, C.A.2    Thornton, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.