Mortality among human immunodeficiency virus type 2-positive villagers in rural Guinea-Bissau is correlated with viral genotype

Journal of Virology

Volumn 72, Issue 10, 1998, Pages 7895-7899

  Grassly, Nicholas C ^a   Xiang, Zheng ^b   Ariyoshi, Koya ^c   Aaby, Peter ^d   Jensen, Henrik ^d   Van Der Loeff, Maarten Schim ^d   Dias, Francisco ^e   Whittle, Hilton ^c   Breuer, Judith ^b  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b ST BARTHOLOMEW S HOSPITAL   (United Kingdom)

^c MEDICAL RESEARCH COUNCIL LABORATORIES   (Gambia)

^d STATENS SERUM INSTITUT   (Denmark)

^e Lab Nacional de Sande Publica   (Guinea-Bissau)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DISEASE COURSE; DNA SEQUENCE; GENE MUTATION; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENOTYPE; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 2; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MAJOR CLINICAL STUDY; MORTALITY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; VIRUS GENE; VIRUS PATHOGENESIS;

EID: 0031668695     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.72.10.7895-7899.1998     Document Type: Article

References (44)

1. Aaby, P., H. Jensen, and M. Schim van der Loeff. Unpublished data.
2. Aaby, P., A. G. Poulsen, O. Larsen, C. B. Christiansen, H. Jensen, M. Melbye, A. Naucler, and F. Dias. 1997. Does HIV-2 protect against HIV-1 infection? AIDS 11:939-940.
3. Albert, J., P. Stalhandske, S. Marquina, J. Karis, R. A. M. Fouchier, E. Norrby, and F. Chiodi. 1996. Biological phenotype of HIV type-2 isolates correlates with V3 genotype. AIDS Res. Hum. Retroviruses 12:821-828.
4. Ariyoshi, K., N. Bern, A. Wilkins, D. Ricard, P. Aaby, A. Naucler, P. T. N'Gum, O. Jobe, S. Jaffar, F. Dias. R. S. Tedder, and H. Whittle. 1996. A community-based study of human immunodeficiency virus type 2 provirus load in a rural village in West Africa. J. Infect. Dis. 173:245-248.
5. Berry, N., K. Ariyoshi, O. Jobe, P. T. N'Gum, T. Corrah, A. Wilkins, H. Whittle, and R. Tedder. 1994. HIV type-2 proviral load measured by quantitative polymerase chain reaction correlates with CD4+ lymphopenia in HIV type 2 infected individuals. AIDS Res. Hum. Retroviruses 10:1031-1037.
6. Biggar, R. J. 1990. AIDS incubation in 1891 HIV seroconverters from different exposure groups. AIDS 4:1059-1066.
7. Cao, Y. Z., L. M. Qin, L. Q. Zhang, J. Safrit, and D. D. Ho. 1995. Virological and immunological characterization of long-term survivors of human immunodeficiency virus type-1 infection. N. Engl. J. Med. 332:201-208.
8. Cheng-Mayer, C., D. Seto, M. Tateno, and J. A. Levy. 1988. Biological features of HIV-1 that correlate with virulence in the host. Science 240:80-82.
9. Cox, D. R., and D. Oakes. 1984. Analysis of survival data. Chapman & Hall, Ltd., London, England.
10. Deacon, N. J., A. Tsykin, A. Solomon, K. Smith, M. Ludfordmenting, D. J. Hooker, D. A. McPhee, A. L. Greenway, A. Ellett, C. Chatfield, V. A. Lawson, S. Crowe, A. Maerz, S. Sonza, J. Learmont, J. S. Sullivan, A. Cunningham, D. Dwyer, D. Dowton, and J. Mills. 1995. Genomic structure of an attenuated quasi-species of HIV-1 from a blood transfusion donor and recipients. Science 270:988-991.
11. Dean, M., M. Carrington, C. Winkler, G. A. Huttley, M. W. Smith, R. Allikmets, J. J. Goedert, S. P. Buchbinder, E. Vittinghoff, E. Gomperts, S. Donfield, D. Vlahov, R. Kaslow, A. Saah, C. Rinaldo, R. Detels, and S. J. O'Brien. 1996. Genetic restriction of HlV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Science 273:1856-1862.
12. Edwards, A. W. F. 1992. Likelihood (extended ed.). The John Hopkins University Press, London, England.
13. Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
14. Felsenstein, J. 1981. Evolutionary trees from gene frequencies and quantitative characters: finding maximum likelihood estimates. Evolution 35:1229-1242.
15. Felsenstein, J. 1973. Maximum-likelihood estimation of evolutionary trees from continuous characters. Am. J. Hum. Genet. 25:471-492.
16. Felsenstein, J., and G. A. Churchill. 1996. A hidden Markov model approach to variation among sites in rate of evolution. Mol. Biol. Evol. 13:93-104.
17. Flaherty, M. T., D. A. Hauer, J. L. Mankowski, M. C. Zink, and J. E. Clements. 1997. Molecular and biological characterization of a neurovirulent molecular clone of simian immunodeficiency virus. J. Virol. 71:5790-5798.
18. Fouchier, R. A. M., M. Groenink, N. A. Kootstra, M. Tersmette, H. G. Huisman, F. Miedema, and H. Schuitemaker. 1992. Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule. J. Virol. 66:3183-3187.
19. Greenberg, A. E., S. Z. Wiktor, K. M. Decock, P. Smith, H. W. Jaffe, and T. J. Dondero, 1996. HIV-2 and natural protection against HIV-1 infection. Science 272:1959.
20. Haynes, B. F., G. Pantaleo, and A. S. Fauci. 1996. Towards an understanding of the correlates of protective immunity to HIV infection. Science 271:324-328.
21. Higgins, D. G., A. J. Bleasby, and R. Fuchs. 1992. ClustalV: improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
22. Huelsenbeck, J. P., J. J. Bull, and C. W. Cunningham. 1996. Combining data in phylogenetic analysis. Trends Ecol. Evol. 11:152-158.
23. Kanki, P. J., G. Eisen, K. U. Travers, R. G. Marlink, M. E. Essex, C. C. Hsieh, and S. Mboup. 1996. HIV-2 and natural protection against HIV-1 infection - response. Science 272:1959-1960.
24. + lymphocyte depletion in rhesus monkeys. J. Virol. 71:4218-4225.
25. Kimata, J. T., and J. Overbaugh. 1997. The cytopathicity of a simian immunodeficiency virus Mne variant is determined by mutations in gag and env. J. Virol. 71:7629-7639.
26. + cell depletion and progression to AIDS. Ann. Intern. Med. 118:681-688.
27. Korber, B., and G. Myers. 1992. Signature pattern analysis: a method for assessing viral sequence relatedness. AIDS Res. Hum. Retroviruses 8:1549-1560.
28. Maddison, W. P., and D. R. Maddison. 1995. MacClade, 3.05 ed. Sinauer Associates, Inc., Sunderland, Mass.
29. Marlink, R., P. Kanki, I. Thior, K. Travers, G. Eisen, T. Siby, I. Traore, C. C. Hsieh, M. C. Dia, E. Gueye, J. Hellinger, A. Gueyendiaye, J. L. Sankale, I. Ndoye, S. Mboup, and M. Essex. 1994. Reduced rate of disease development after HIV-2 infection as compared to HIV-1. Science 265:1587-1590.
30. McNeil, A. J., P. L. Yap, S. M. Gore, R. P. Brettle, M. McColl, R. Wyld, S. Davidson, R. Weightman, A. M. Richardson, and J. R. Robertson. 1996. Association of HLA types A1-B8-Dr3 and B27 with rapid and slow progression of HIV disease. QJM Monthly J. Assoc. Physicians 89:177-185.
31. Mellors, J. W., C. R. Rinaldo, P. Gupta, R. M. White, J. A. Todd, and L. A. Kingsley. 1996. Prognosis in HIV-1 infection predicted by the quantity of virus in plasma. Science 272:1167-1170.
32. Michael, N. L., G. Chang, L. G. Louie, J. R. Mascola, D. Dondero, D. L. Birx, and H. W. Sheppard. 1997. The role of viral phenotype and CCR-5 gene defects in HIV-1 transmission and disease progression. Nat. Med. 3:338-340.
33. Mocroft, A., C. A. Sabin, and A. N. Phillips. 1996. Lower prevalence and incidence of HIV-1 syncytium-inducing phenotype among injecting drug users relative to homosexual men - a response. AIDS 10:344-345.
34. + lymphocytes. J. AIDS Hum. Retrovirol. 8:496-505.
35. smmPBj variant. J. Virol. 67:2466-2474.
36. Poulsen, A.-G., P. Aaby, O. Larsen, H. Jensen, A. Naucler, I. M. Lisse, C. B. Christiansen, F. Dias, and M. Melbye. 1997. 9-year HIV-2-associated mortality in an urban community in Bissau, West Africa. Lancet 349:911-914.
37. Ricard, D., A. Wilkins, P. T. N'Gum, R. Hayes, G. Morgan, A. P. Da Silva, and H. Whittle. 1994. The effects of HIV-2 infection in a rural area of Guinea-Bissau. AIDS 8:977-982.
38. Schulz, T. F., D. Whitby, J. G. Hoad, T. Corrah, H. Whittle, and R. A. Weiss. 1990. Biological and molecular variability of human immunodeficiency virus type 2 isolates from The Gambia. J. Virol. 64:5177-5182.
39. Smith, M. W., M. Dean, M. Carrington, C. Winkler. G. A. Huttley, D. A. Lomb, J. J. Goedert, T. R. O'Brien, L. P. Jacobson, R. Kaslow, S. Buchbinder, E. Vittinghoff, D. Vlahov, K. Hoots, M. W. Hilgartner, and S. J. O'Brien. 1997. Contrasting genetic influence of CCR2 and CCR5 variants on HIV-1 infection and disease progression. Science 277:959-965.
40. Soto-Ramirez, L. E., B. Renjifo. M. F. McLane, R. Marlink, C. O'Hara, R. Sutthent, C. Wasi, P. Vithayasai, V. Vithayasai, C. Apichartpiyakul, P. Auewarakul, V. P. Cruz, D. S. Chui, R. Osathanondh, K. Mayer, T. H. Lee, and M. Essex. 1996. HIV-1 Langerhans' cell tropism associated with heterosexual transmission of HIV. Science 271:1291-1293.
41. Spijkerman, I. J. B., M. Koot, M. Prins, I. P. M. Keet, A. Vandenhoek, F. Miedema, and R. A. Coutinho. 1995. Lower prevalence and incidence of HIV-1 syncytium-inducing phenotype among injecting drug users compared with homosexual men. AIDS 9:1085-1092.
42. Travers, K., S. Mboup, R. Marlink, A. Gueyendiaye, T. Siby, I. Thior, I. Traore, A. Diengsarr, J. L. Sankale, C. Mullins, I. Ndoye, C. C. Hsieh, M. Essex, and P. Kanki. 1995. Natural protection against HIV-1 infection provided by HIV-2. Science 268:1612-1615.
43. Wilkins, A., D. Ricard, J. Todd, H. Whittle, F. Dias, and A. P. Da Silva. 1993. The epidemiology of HIV infection in a rural area of Guinea-Bissau. AIDS 7:1119-1122.
44. Xiang, Z., K. Ariyoshi, A. Wilkins, F. Dias, H. Whittle, and J. Breuer. 1997. HIV type 2 pathogenicity is not related to subtype in rural Guinea Bissau. AIDS Res. Hum. Retroviruses 13:501-505.