Barley disease resistance gene analogs of the NBS-LRR class: Identification and mapping

Molecular Genetics and Genomics

Volumn 269, Issue 1, 2003, Pages 150-161

  Madsen, L H ^a   Collins, N C ^b   Rakwalska, M ^a,g   Backes, G ^c   Sandal, N ^a   Krusell, L ^a,h   Jensen, J ^c   Waterman, E H ^b   Jahoor, A ^c   Ayliffe, M ^d   Pryor, A J ^d   Langridge, P ^e   Schulze Lefert, P ^f   Stougaard, J ^a  

^a AARHUS UNIVERSITY   (Denmark)

^b JOHN INNES CENTRE   (United Kingdom)

^c TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^d CSIRO   (Australia)

^e UNIVERSITY OF ADELAIDE   (Australia)

^f MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^g MAX PLANCK RESEARCH UNIT FOR ENZYMOLOGY OF PROTEIN FOLDING   (Germany)

^h MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

Author keywords

Barley; Disease resistance gene analogs (RGAs); Mapping; NBS LRR proteins

Indexed keywords

COMPLEMENTARY DNA; VEGETABLE PROTEIN;

ARTICLE; CEREAL; CHROMOSOME ANALYSIS; CONTROLLED STUDY; DNA SEQUENCE; DNA SPLICING; GENE ACTIVATION; GENE IDENTIFICATION; GENE INSERTION; GENE ISOLATION; GENE MAPPING; GENE SEGREGATION; GENE STRUCTURE; GENETIC RESISTANCE; GENETIC VARIABILITY; INTRON; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE BINDING SITE; NUCLEOTIDE SEQUENCE; PLANT DISEASE; PLANT GENETICS; POLYADENYLATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

HORDEUM VULGARE SUBSP. VULGARE;

EID: 0038215629     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-003-0823-5     Document Type: Article

References (66)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipmann DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Ayliffe MA, Frost DV, Finnegan EJ, Lawrence GJ, Anderson PA, Ellis JG (1999) Analysis of alternative transcripts of the flax L6rust resistance gene. Plant J 17:287-292
3. Ayliffe MA, Collins NC, Ellis JG, Pryor A (2000) The maize rp1rust resistance gene identifies homologues in barley that have been subjected to diversifying selection. Theor Appl Genet 100:1144-1154
4. Backes G, Madsen LH, Jaiser H, Stougaard J, Herz M, Mohler V, Jahoor A (2003) Localisation of genes for resistance against Blumeria graminis f. sp. hordei and Puccinia graminis in a cross between a barley cultivar and a wild barley (Hordeum vulgare ssp. spontaneum) line. Theor Appl Genet 106:353-362
5. Bai J, Pennill LA, Ning J, Lee SW, Ramalingam J, Webb CA, Zhao B, Sun Q, Nelson JC, Leach JE, Hulbert SH (2002) Diversity in nucleotide binding site-leucine-rich repeat genes in cereals. Genome Res 12:1871-1884
6. Bariana HS, Hayden MJ, Ahmed NU, Bell JA, Sharp P J, McIntosh RA (2001) Mapping durable adult plant and seedling resistances to stripe rust and stem rust diseases in wheat. Aust. J Agric Res 52:1247-1255
7. Brueggeman R, Rostoks N, Kudrna D, Kilian A, Han F, Chen J, Druka A, Steffenson B, Kleinhofs A (2002) The barley stem rust-resistance gene Rpg1 is a novel disease-resistance gene with homology to receptor kinases, Proc Natl Acad Sci USA 99:9328-9333
8. Bryan GT, Wu K, Farrall L, Jia Y, Hershey HP, McAdams SA, Faulk KN, Donaldson GK, Tarchini R, Valent B (2000) A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant Cell 12:2033-2045
9. Büschges R, Hollricher K, Panstruga R, Simons G, Wolter M, Frijters A, van Daelen R, van der Lee T, Diergaarde P, Groenendijk J, Töpsch S, Vos P, Salamini F, Schulze-Lefert P (1997) The barley Mlo gene: a novel control element of plant pathogen resistance. Cell 88:695-705
10. Chalmers KJ, et al (2001) Construction of three linkage maps in bread wheat Triticum aestivum. Aust J Agric Res 52:1089-1119
11. Collins NC, Webb CA, Seah S, Ellis JG, Hulbert SH, Pryor A (1998) The isolation and mapping of disease resistance gene analogs in maize. Mol-Plant-Microbe-Interact 11:968-978
12. Collins N, Drake J, Ayliffe M, Sun Q, Ellis J, Hulber S, Pryor T (1999) Molecular characterization of the maize Rp1-D rust resistance haplotype and its mutants. Plant Cell 11:1365-1376
13. Collins N, Park R, Spielmeyer W, Ellis J, Pryor AJ (2001) Resistance gene analogs in barley and their relationship to rust resistance genes. Genome 44:375-381
14. Dangl JL, Jones JDG (2001) Plant pathogens and integrated defence responses to infection. Nature 411:826-833
15. Dinesh-Kumar SP, Baker BJ (2000) Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance. Proc Natl Acad Sci 97:1908-1913
16. Druka A, Kudrna D, Han F, Kilian A, Steffenson B, Frisch D, Tomkins J, Wing R, Kleinhofs A (2000) Physical mapping of the barley stem rust resistance gene Rpg4. Mol Gen Genet 264:283-290
17. Feuerstein U, Brown AHD, Burdon JJ (1990) Linkage of rust resistance genes from wild barley (Hordeum spontaneum) with isozyme markers. Plant Breeding 104:318-324
18. Fluhr R (2001) Sentinels of disease. Plant resistance genes. Plant Physiol 127:1367-1374
19. Giese H, Holm-Jensen AG, Jensen HP, Jensen J (1993) Localization of the Laevigatum powdery mildew resistance gene to barley chromosome 2 by the use of RFLP markers. Theor Appl Genet 85:897-900
20. Goff SA, et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92-100
21. Graner A (1996) Molecular mapping of genes conferring disease resistance: the present state and future prospects. In: Scoles GJ, Rossnagel BG (eds) Proceedings of the VIIth International Barley Genetics Symposium. University Extension Press, Saskatoon, pp 157-166
22. Graner A, Bauer E, Kellermann A, Kirchner S, Muraya JK, Jahoor A, Wenzel G (1994) Progress of RFLP-map construction in winter barley. Barley Genet Newslett 23:53-59
23. Graner A, Streng S, Kellermann A, Schiemann A, Bauer E, Waugh R, Pellio B, Ordon F (1999) Molecular mapping and genetic fine-structure of the rym5locus encoding resistance to different strains of the barley Yellow Mosaic Virus complex. Theor Appl Genet 98:285-290
24. Halterman D, Zhou F, Wei F, Wise RP, Schulze-Lefert P (2001) The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria graminis f. sp. hordei in barley and wheat. Plant J 25:335-348
25. Hammond-Kosack KE, Jones JDG (1997) Plant disease resistance genes. Annu Rev Plant Physiol Plant Mol Biol 48:575-607
26. Hayes AJ, Yue YG, Saghai Maroof MA (2000) Expression of two soybean resistance gene candidates shows divergence of paralogous single-copy genes. Theor Appl Genet 101:789-795
27. Helms-Jørgensen J (1992) Sources and genetics of resistance to fungal pathogens. In: Shewry P (ed) Barley: genetics, molecular biology and biotechnology. CAB International, Wallingford, pp 441-457
28. Hossain MA, Sparrow DHB (1991) Resistance to powdery mildew (Erysiphe graminis f. sp. hordei) in the barley cultivar Galleon. II. Chromosomal location and linkage with hordein protein genes. Euphytica 52:11-17
29. Ivandic V, Walther U, Graner A (1998) Molecular mapping of a new gene in wild barley conferring complete resistance to leaf rust (Puccinia hordei Otth). Theor Appl Genet 97:1235-1239
30. Jensen J, Backes G, Skinnes H, Giese H (2002) Quantitative trait loci for scald resistance in barley localized by a non-interval mapping procedure. Plant Breeding 121:124-128
31. Jones DA, Jones JDG (1997) The role of leucine-rich repeat proteins in plant defenses. Adv Bot Res 24:90-167
32. Kilian A, Chen J, Han F, Steffenson B, Kleinhofs A (1997) Towards map-based cloning of the barley stem rust resistance genes Rpg1and Rpg4using rice as an intergenomic cloning vehicle. Plant Mol Biol 35:187-195
33. Kim MC, Panstruga R, Elliott C, Müller J, Devoto A, Yoon HW, Park HC, Cho MJ, Schulze-Lefert P (2002) Calmodulin interacts with MLO protein to regulate defence against mildew in barley. Nature 416:447-451
34. Kleinhofs A, et al (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome. Theor Appl Genet 86:705-712
35. Kretschmer JM, Chalmers KJ, Manning S, Karakousis A, Barr AR, Islam AKMR, Logue SJ, Choe YW, Barker SJ, Lance RCM, Langridge P (1997) RFLP mapping of the Ha2cereal cyst nematode resistance gene in barley. Theor Appl Genet 94:1060-1064
36. Langridge P, Karakousis A, Collins N, Kretschmer J, Manning S (1995) A consensus linkage map of barley. Mol Breeding 1:389-395
37. Laurie DA, Pratchett N, Bezant JH, Snape JW (1995) RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter x spring barley (Hordeum vulgare L.) cross. Genome 38:575-585
38. Lawrence GJ, Finnegan EJ, Ayliffe MA, Ellis JG (1995) The L6gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2and the tobacco viral resistance gene N. Plant Cell 7:1195-1206
39. Leister D, Kurth J, Laurie DA, Yano M, Sasaki T, Devos K, Graner A, Schulze-Lefert P (1998) Rapid re-organization of resistance gene homologs in cereal genomes. Proc Natl Acad Sci USA 95:370-375
40. Leister D, Kurth J, Laurie DA, Yano M, Sasaki T, Graner A, Schulze-Lefert P (1999) RFLP- and physical mapping of resistance gene homologues in rice (O. sativa) and barley (H. vulgare). Theor Appl Genet 98:509-520
41. Lorkovic ZJ, Wieczorek Kirk DA, Lambermon MH, Filipowicz W (2000) Pre-mRNA splicing in higher plants. Trends Plant Sci 5:160-167
42. Lupas A (1996) Coiled coils: new structures and new functions. Trends Biochem Sci 21:375-382
43. Madsen LH, Kreiberg JD, Gausing K (1991) A small gene family in barley encodes ribosomal proteins homologous to yeast YL17 and L22 from archaebacteria, eubacteria, and chloroplasts. Curr Genet 19:417-422
44. Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding super family. Plant J 20:317-332
45. Michalek W, Künzel G, Graner A (1999) Sequence analysis and gene identification in a set of mapped RFLP markers in barley (Hordeum vulgare). Genome 42:849-853
46. Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8:1113-1130
47. Pan Q, Wendel J, Fluhr R (2000) Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes. J Mol Evol 50:203-213
48. Park RF, Karakousis A (2002) Characterization and mapping of gene Rph19conferring resistance to Puccinia hordei in the cultivar "Reka 1" and several Australian barleys. Plant Breeding 121:232-236
49. Parker JE, Coleman MJ, Szabò V, Frost LN, Schmidt R, van der Biezen EA, Moores T, Dean C, Daniels MJ, Jones JDG (1997) The Arabidopsis downy mildew resistance gene RPP5shares similarity to the Toll and interleukin-1 receptors with N and L6. Plant Cell 9:879-894
50. Roane CW, Starling TM (1989) Linkage studies with genes conditioning leaf rust reaction in barley. Barley Genet Newslett 33:190-192
51. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81:8014-8018
52. Schmidt D, Röder MS, Dargatz H, Wolf N, Schweizer GF, Tekauz A, Ganal MW (2001) Construction of a YAC library from barley cultivar Franka and identification of YAC-derived markers linked to the Rh2gene conferring resistance to scald (Rhynchosporium secalis). Genome 44:1031-1040
53. Schönfeld M, Ragni A, Fischbeck G, Jahoor A (1996) RFLP mapping of three new loci for resistance genes to powdery mildew (Erysiphe graminis) f.sp. hordei) in barley. Theor Appl Genet 93:48-56
54. Seah S, Sivasithamparam K, Karakousis A, Lagudah ES (1998) Cloning and characterisation of a family of disease resistance gene analogs from wheat and barley. Theor Appl Genet 97:937-945
55. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
56. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24:4876-4882
57. Toojinda T, Broers LH, Chen XM, Hayes PM, Kleinhofs A, Korte J, Kudrna D, Leung H, Line RF, Powell W, Ramsay L, Vivar H, Waugh R (2000) Mapping quantitative and qualitative disease resistance genes in a doubled haploid population of barley (Hordeum vulgare). Theor Appl Genet 101:580-589
58. Van der Biezen EA, Jones JDG (1998) The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 8:R226-227
59. Wang H, Qi M, Cutler AJ (1993) A simple method of preparing plant samples for PCR. Nucleic Acids Res 21:4153-4154
60. Wang ZX, Yano M, Yamanouchi U, Iwamoto M, Monna L, Hayasaka H, Katayose Y, Sasaki T (1999) The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J 19:55-64
61. Wei F, Gobelman-Werner K, Morroll SM, Kurth J, Mao L, Wing R, Leister D, Schulze-Lefert P, Wise RP (1999) The Mla (Powdery Mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley. Genetics 153:1929-1948
62. Wei F, Wing RA, Wise RP (2002) Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. Plant Cell 14:1903-1917
63. Weyen J, Bauer E, Graner A, Friedt W, Ordon F (1996) RAPD-mapping of the distal portion of chromosome 3 of barley, including the BaMMV/BaYMV resistance gene ym4. Plant Breeding 115:285-287
64. Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, Baker B (1994) The product of the tobacco mosaic virus resistance gene N: similarity to Toll and the interleukin-1 receptor. Cell 78:1101-1115
65. Yoshimura S, Yamanouchi U, Katayose Y, Toki S, Wang ZX, Kono I, Kurata N, Yano M, Iwata N, Sasaki T (1998) Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc Natl Acad Sci USA 95:1663-1668
66. Zhou F, Kurth J, Wei F, Elliot C, Valè G, Yahiaoui N, Keller B, Somerville S, Wise R, Schulze-Lefert P (2001) Cell-autonomous expression of barley Mla1 confers race-specific resistance to the powdery mildew fungus via a Rar1-independent signaling pathway. Plant Cell 13:337-350