The maize rp1 rust resistance gene identifies homologues in barley that have been subjected to diversifying selection

Theoretical and Applied Genetics

Volumn 100, Issue 7, 2000, Pages 1144-1154

  Ayliffe, M A ^a   Collins, N C ^a   Ellis, J G ^a   Pryor, A ^a  

^a CSIRO   (Australia)

Author keywords

Barley; Maize; Puccinia; Rp1; Rpg1; Rust resistance

Indexed keywords

BARLEY; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CHROMOSOMAL LOCALIZATION; DISEASE RESISTANCE; GENE LOCUS; GENETIC LINKAGE; MAIZE; PUCCINIA SORGHI; RP1 GENE; RUST; SEQUENCE HOMOLOGY;

EID: 0034072437     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220051398     Document Type: Article

References (40)

1. Anderson PA, Lawrence GJ, Morrish BC, Ayliffe MA, Finnegan EJ, Ellis JG (1997) Inactivation of the flax rust resistance gene M associated with loss of a repeated unit within the leucinerich repeat coding region. Plant Cell 9: 641-651
2. Botella MA, Parker JE, Frost LN, Bittner-Eddy PD, Beynon JL, Daniels MJ, Holub EB, Jones JDG (1998) Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. Plant Cell 10: 1847-1860
3. Chen FQ, Hayes PM (1989) A comparison of Horedeum bulbsum-mediated haploid production efficiency in barley using in vitro floret and tiller culture. Theor Appl Genet 77: 701-704
4. Collins N, Webb CA, Seah S, Ellis JG, Hulbert SH, Pryor AJ (1998) The isolation and mapping of disease resistance gene analogs in maize. Mol Plant Microbe Interact 11: 968-978
5. Collins N, Drake J, Ayliffe M, Qing S, Ellis J, Hulbert S, Pryor T (1999) Molecular characterisation of the maize Rp1D rust resistance haplotype and its mutants. Plant Cell 11: 1-13
6. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12: 387-395
7. Endo T, Ikeo K, Gojobori T (1996) Large-scale search for genes on which positive selection may operate. Mol Biol Evol 13: 685-690
8. Hughes AL (1995) Origin and evolution of HLA class-I psuedogenes. Mol Biol Evol 12: 247-258
9. Hughes AL, Nei M (1988) Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335:167-170
10. Hulbert SH, Bennetzen JL (1991) Recombination at the Rp1 locus in maize. Mol Gen Genet 226: 377-382
11. Jones DA, Jones JDG (1997) The role of leucine-rich repeat proteins in plant defenses. In: Andrews JH, Tommerup IC, Callow JA (eds) Advances in botanical research vol. 24. Academic Press, New York, pp 89-167
12. Killian A, Kudrna DA, Kleinhofs A, Yano M, Kurata N, Steffenson B, Sasaki T (199.5) Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region. Nucleic Acids Res 23: 2719-2733
13. Kleinhofs A, Killian A, Saghai-Laroof MA, Biyashev RM, Hayes P, Chen FQ, Lapitan N, Fenwick A, Blake TK, Kanazin V, Ananiev E, Dahleen L, Kudrna D, Bollinger J, Knapp SJ, Liu B, Sorrells M, Heun M, Franckowiak JD, Hoffman D, Skadsen R, Steffenson BJ (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome. Theor Appl Genet 86: 705-712
14. Kobe B, Deisenhofer J (1993) Crystal structure of a porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 366: 751-756
15. Kobe B, Deisenhofer J (1994) The leucine-rich repeat: a versatile binding motif. Trends Biol Sci 19: 415-421
16. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newberg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181
17. Lawrence GJ, Finnegan EJ, Ayliffe MA, Ellis JG (1995) The L6 gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N. Plant Cell 7: 1195-1206
18. Leister D. Ballvora A, Salamini F, Gebhardt C (1996) A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants. Nat Genet 14: 4221-429
19. Leister D, Kurth J, Laurie DA, Yano M, Sasaki T, Devos K, Graner A, Schulze-Lefert (1998) Rapid reorganisation of resistance gene homologues in cereal genomes. Proc Natl Acad Sci USA 95: 370-375
20. McDowell JM, Dhandaydham M, Long TA, Aarts MGM, Goff S, Holub EB, Dangl JL (1998) Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis. Plant Cell 10: 1861-1874
21. Meyers BC, Shen KA, Rohani P, Gaul BS, Michelmore RW (1998) Receptor-like genes in the major resistance locus of lettuce are subject to diversifying selection. Plant Cell 11: 1833-1846
22. Parniske M, Hammond-Kosack KE, Golstein C, Thomas CM, Jones DA, Harrison K, Wulff BBH, Jones JDG (1997) Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell 91: 821-832
23. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard R (1984) Ribosomal DNA spacer-length polymorphism in barley: Mendelian inheritence, chromosomal location and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018
24. Salmeron JM, Oldroyd GED, Rommens CMT, Scofield SR, Kim H-S, Lavelle DT, Dahlbeck D, Staskawicz BJ (1996) Tomato Prf is a member of the leucine -rich repeat class of disease resistance gene and lies embedded within the Pto kinase gene cluster. Cell 86: 123-133
25. Sambrook J, Fritsch EF, Maniatis TA (1989) Molecular cloning: a laboratory manual., 2nd edition, Cold Spring Harbour Laboratory Press, New York
26. Saxena KMS, Hooker AL (1968) On the structure of a gene for disease resistance in maize. Proc Natl Acad Sci USA 61: 1300-1305
27. Seah S, Sivasithamparam K, Lagudah ES (1998) Cloning and characterisation of a family of disease resistance gene analogs from wheat and barley. Theor Appl Genet 97: 937-945
28. Siebert PD, Chenchik A, Kellogg DE, Lukyanov A, Lukyanov SA (1995) An improved method for walking in uncloned genomic DNA. Nucleic Acids Res 23: 1087-1088
29. Song W-Y, Wang G-L, Chen L, Kim H-S, Pi L-Y, Gardner J, Wang B, Holsten T, Zhai W-X, Zhu L-H, Fauquet C, Ronald PC (1995) A receptor kinase-like protein encoded by the rice disease resistance gene Xa21. Science 270: 1804-1806
30. Spielmeyer W, Robertson M, Collins N, Leister D, Schulze-Lefert P, Seah S, Moullet O, Lagudah ES (1998) A superfamily of disease resistance gene analogs are located on all homoeologous chromosome groups of wheat (Triticum aestivum). Genome 41: 782-785
31. Staskawicz BJ, Ausubel FM, Baker BJ, Ellis JG, Jones JDG (1995) Molecular genetics of plant disease resistance. Science 268: 661-667
32. Steffenson BJ (1992) Analysis of durable resistance to stem rust in barley. Euphytica 63: 153-167
33. Steffenson BJ, Miller JD, Jin Y (1993) Detection of the stem rust resistance gene Rpq1 in barley seedlings. Plant Dis 77: 626-629
34. Tanaka T, Nei M (1989) Positive Darwinian selection observed at the variable regions of immunoglobulins. Mol Biol Evol 6: 447-459
35. Thomas CM, Jones DA, Parniske M, Harrison K, Balint-Kurti PJ, Hatzixanthis K, Jones JDG (1997) Characterisation of the tomato Cf-4 gene for resistance to Cladosporium fulvum identifies sequences that determine recognitional specificity in Cf-4 and Cf-9. Plant Cell 9: 2209-2224
36. Van Deynze AE, Nelson JC, Yglesias ES, Harrington SE, Braga DP, McCouch SR, Sorrells M (1995) Comparative mapping in grasses. Wheat relationships. Mol Gen Genet 248: 744-754
37. Wang G-L, Ruan D-L, Song W-Y, Sideris S, Chen L, Pi L-Y, Zhang S, Zhang Z, Fauquet C, Gaut BS, Whalen MC, Ronald PC (1998) Xu21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution. Plant Cell 10: 765-779
38. Wilkinson DR, Hooker AL (1968) Genetics of reaction to Puccinia sorghi in ten inbred corn lines from Africa and Europe. Phytopathology 58: 605-608
39. Whittaker PA, Campbell AJB, Southern E, Murray NE (1988) Enhanced recovery and restriction mapping of DNA fragments cloned into a new lambda vector. Nucleic Acids Res 16: 6725-6736
40. Yu YG, Buss GR, Saghai Maroof MA (1996) Isolation of a superfamily of candidate disease resistance genes from soybean based on a conserved nucleotide-binding site. Proc Natl Acad Sci USA 93: 11751-11756