Low glutelin content1: A dominant mutation that suppresses the glutelin multigene family via RNA silencing in rice

Plant Cell

Volumn 15, Issue 6, 2003, Pages 1455-1467

  Kusaba, Makoto ^a   Miyahara, Kenzo ^a   Iida, Shuichi ^b   Fukuoka, Hiroyuki ^b,e   Takano, Toshiya ^a   Sassa, Hidenori ^c   Nishimura, Minoru ^a   Nishio, Takeshi ^d  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b NATIONAL AGRICULTURAL RESEARCH CENTER FOR WESTERN REGION   (Japan)

^c YOKOHAMA CITY UNIVERSITY   (Japan)

^d TOHOKU UNIVERSITY   (Japan)

^e NATIONAL INSTITUTE OF VEGETABLE AND TEA SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GENES; GRAIN (AGRICULTURAL PRODUCT); RNA; SEED;

TRANSGENIC PLANTS;

PLANT CELL CULTURE;

EMBRYOPHYTA; EUKARYOTA;

EID: 0038118623     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.011452     Document Type: Article

References (55)

1. Bender, J., and Fink, G.R. (1995). Epigenetic control of an endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis. Cell 83, 725-734.
2. Bernstein, E., Caudy, A.A., Hammond, S.M., and Hannon, G.J. (2001). Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409, 363-366.
3. Catalanotto, C., Azzalin, G., Macino, G., and Cogoni, C. (2000). Gene silencing in worms and fungi. Nature 404, 245.
4. Catalanotto, C., Azzalin, G., Macino, G., and Cogoni, C. (2002). Involvement of small RNAs and role of the qde genes in the gene silencing pathway in Neurospora. Genes Dev. 16, 790-795.
5. Cogoni, C., and Macino, G. (1999). Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase. Nature 399, 166-169.
6. Dalmay, T., Hamilton, A.J., Mueller, E., and Baulcombe, D.C. (2000a). Potato virus X amplicons in Arabidopsis mediate genetic and epigenetic gene silencing. Plant Cell 12, 369-380.
7. Dalmay, T., Hamilton, A., Rudd, S., Angell, S., and Boulcombe, D.C. (2000b). An RNA-dependent RNA polymerase gene in Arabidopsis is required for post-transcriptional gene silencing mediated by a transgene but not by a virus. Cell 101, 543-553.
8. Elbashir, S.M., Lendeckel, W., and Tuschl, T. (2001). RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev. 15, 188-200.
9. Fagard, M., Boutet, S., Morel, J.-B., Bellini, C., and Vaucheret, H. (2000). AGO1, QDE-2, and RDE-1 related proteins required for posttranscriptional gene silencing in plants, quelling in fungi, and RNA interference in animals. Proc. Natl. Acad. Sci. USA 97, 11650-11654.
10. Foster, T.M., Lough, T.J., Emerson, S.J., Lee, R.H., Bowman, J.L., Foster, R.L.S., and Lucas, W.J. (2002). A surveillance system regulates selective entry of RNA into the shoot apex. Plant Cell 14, 1497-1508.
11. Fukuoka, H., et al. (2000). Agrobacterium-mediated transformation of monocot and dicot plants using the NCR promoter derived from soybean chiorotic mottle virus. Plant Cell Rep. 19, 815-820.
12. Hamilton, A.J., and Baulcombe, D.C. (1999). A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286, 950-952.
13. Hamilton, A.J., Voinnet, O., Chappell, L., and Baulcombe, D. (2002). Two classes of short interfering RNA in RNA silencing. EMBO J. 21, 4671-4679.
14. Hammond, S.M., Bernstein, E., Beach, D., and Hannon, G.J. (2000). An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. Nature 404, 293-296.
15. Iida, S., Amano, E., and Nishio, T. (1993). A rice (Oryza sativa L.) mutant having a low content of glutelin and a high content of prolamine. Theor. Appl. Genet. 87, 374-378.
16. Iida, S., Kusaba, M., and Nishio, T. (1997). Mutants lacking glutelin subunits in rice: Mapping and combination of mutated glutelin genes. Theor. Appl. Genet. 94, 177-183.
17. Jeddeloh, J., Bender, J., and Richard, E.J. (1998). The DNA methylation locus DDM1 is required for maintenance of gene silencing in Arabidopsis. Genes Dev. 12, 1714-1725.
18. Jones, L., Hamilton, A.J., Voinnet, O., Thomas, C.L., Maule, A.J., and Baulcombe, D.C. (1999). RNA-DNA interaction and DNA methylation in post-transcriptional gene silencing. Plant Cell 11, 2291-2301.
19. Kato, M., Miura, A., Bender, J., Jacobsen, S.E., and Kakutani, T. (2003). Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr. Biol. 13, 421-426.
20. Ketting, R.F., Fischer, S.E.J., Bernstein, E., Sijen, T., Hannon, G.J., and Plasterk, R.H.A. (2001). Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes Dev. 15, 2654-2659.
21. Komatsu, S., Kajiwara, H., and Hirano, H. (1993). A rice protein library: A data-file of rice proteins separated by two-dimensional electrophoresis. Theor. Appl. Genet. 86, 935-942.
22. Kumamaru, T., Satoh, H., Iwata, N., Omura, T., Ogawa, M., and Tanaka, K. (1988). Mutants for rice storage proteins. Theor. Appl. Genet. 76, 11-16.
23. Lipardi, C., Wei, Q., and Paterson, B.M. (2001). RNAi as random degradative PCR: siRNA primers convert mRNA into dsRNAs that are degraded to generate new siRNAs. Cell 107, 297-307.
24. Llave, C., Kasschau, K.D., Rector, M.A., and Carrington, J.C. (2002). Endogenous and silencing-associated small RNAs in plants. Plant Cell 14, 1605-1619.
25. Luff, B., Pawlowski, L., and Bender, J. (1999). An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis. Mol. Cell 3, 505-511.
26. Ma, C., and Mitra, A. (2002). Intrinsic direct repeats generate consistent post-transcriptional gene silencing in tomato. Plant J. 31, 37-49.
27. Makeyev, E.V., and Bamford, D.H. (2002). Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes. Mol. Cell 10, 1417-1427.
28. Masumura, T., Kidzu, K., Sugiyama, Y., Mitsukawa, N., Hibino, T., Tanaka, K., and Fujii, S. (1989). Nucleic sequence of a cDNA encoding a major rice glutelin. Plant Mol. Biol. 12, 723-725.
29. Mochizuki, T., and Hara, S. (2000). Usefulness of low protein rice on diet therapy in patients with chronic renal failure. Jpn. J. Nephrol. 42, 24-29.
30. Mourrain, P., et al. (2000). Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell 101, 533-542.
31. Ogawa, M., Kumamaru, T., Satoh, H., Iwata, N., Omura, T., Kasai, Z., and Tanaka, K. (1987). Purification of protein body-1 of rice seed and its polypeptide composition. Plant Cell Physiol. 28, 1517-1528.
32. Paulin, R., Grigg, W., Davey, M.W., and Piper, A.A. (1998). Urea improves efficiency of bisulphate-mediated sequencing of 5′-methylcytosine in genomic DNA. Nucleic Acids Res. 26, 5009-5010.
33. Rogers, S.O., and Bendich, A.J. (1985). Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Mol. Biol. 5, 69-76.
34. Ronchi, A., Petroni, K., and Tonelli, C. (1995). The reduced expression of endogenous duplications (REED) in the maize R gene family is mediated by DNA methylation. EMBO J, 14, 5318-5328.
35. Rothnie, H.M. (1996). Plant mRNA 3′-end formation. Plant Mol. Biol. 32, 43-61.
36. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd ed. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press).
37. Siebert, P.D., Chenchik, A., Kellogg, D.E., Lukyanov, K.A., and Lukyanov, S.A. (1995). An improved PCR method for walking in uncloned genomic DNA. Nucleic Acids Res. 23, 1087-1088.
38. Sijen, T., Fleenor, J., Simmer, F., Thijssen, K.L., Parrish, S., Timmons, L., Plasterk, R.H.A., and Fire, A. (2001). On the role of RNA amplification in dsRNA-triggered gene silencing. Cell 107, 465-476.
39. Smardon, A., Spoerke, J.M., Stacey, S.C., Klein, M.E., Mackin, N., and Maine, E.M. (2000). EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans. Curr. Biol. 10, 169-178.
40. Smith, N.A., Singh, S.P., Wang, M.-B., Stoutjesdijk, P.A., Green, A.G., and Waterhouse, P.M. (2000). Total silencing by intron-spliced hairpin RNAs. Nature 407, 319-320.
41. Tabara, H., Sarkissan, M., Kelly, W.G., Fleenor, J., Grishok, A., Timmons, L., Fire, A., and Mello, C.C. (1999). The rde-1 gene, RNA interference, and transposon silencing in C. elegans. Cell 99, 123-132.
42. Takaiwa, F., Kikuchi, S., and Oono, K. (1987). A rice glutelin gene family: A major type of glutelin mRNAs can be divided into two classes. Mol. Gen. Genet. 208, 15-22.
43. Takaiwa, F., Oono, K., Wing, D., and Kato, A. (1991). Sequence of three members and expression of a new major subfamily of glutelin genes from rice. Plant Mol. Biol. 17, 875-885.
44. Tanaka, K., Sugimoto, T., Ogawa, M., and Kasa, Z. (1980). Isolation and characterization of protein bodies in the rice endosperm. Agric. Biol. Chem. 44, 1633-1639.
45. Tang, G., Reinhart, B.J., Bartel, D.P., and Zamore, P.D. (2003). A biochemical framework for RNA silencing in plants. Genes Dev. 17, 49-63.
46. Thomas, C.L., Jones, L., Baulcombe, D.C., and Maule, A.J. (2001). Size constraints for targeting post-transcriptional gene silencing and for RNA-directed methylation in Nicotiana benthamiana using a potato virus X vector. Plant J. 25, 417-425.
47. Todd, J.J., and Vodkin, L.O. (1996). Duplications that suppress and deletions that restore expression from a chalcone synthase multigene family. Plant Cell 8, 687-699.
48. Vaistij, F.E., Jones, L., and Baulcombe, D.C. (2002). Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase. Plant Cell 14, 857-867.
49. Vaucheret, H., Béclin, C., Elmayan, T., Feuerbach, F., Godon, C., Morel, J.-B., Mourrain, P., Palauqui, J.-C., and Vemhettes, S. (1998). Transgene-induced gene silencing in plants. Plant J. 16, 651-659.
50. Voinnet, O. (2002). RNA silencing: Small RNAs as ubiquitous regulators of gene expression. Curr. Opin. Plant Biol. 5, 444-451.
51. Voinnet, O., Vain, P., Angell, S., and Baulcombe, D.C. (1998). Systemic spread of sequence-specific transgene RNA degradation in plants is initiated by localized introduction of ectopic promoterless DNA. Cell 95, 177-187.
52. Wang, J., Jiang, J., and Oard, J.H. (2000). Structure, expression and promoter activity of two polyubiquitin genes from rice (Oryza sativa L.). Plant Sci. 156, 201-211.
53. Waterhouse, P.M., Graham, M.W., and Wang, M.-B. (1998). Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA. Proc. Natl. Acad. Sci. USA 95, 13959-13964.
54. Wu, C.-Y., Suzuki, A., Washida, H., and Takaiwa, F. (1998). The GCN4 motif in a rice glutelin gene is essential for endosperm-specific gene expression and is activated by Opaque-2 in transgenic rice plants. Plant J. 14, 673-683.
55. Zamore, P.D., Tuschl, T., Sharp, P.A., and Barrel, D.P. (2000). RNAi: Double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell 101, 25-33.