메뉴 건너뛰기




Volumn 19, Issue 2, 2002, Pages 115-135

Molecular modelling of CYP2B6 based on homology with the CYP2C5 crystal structure: Analysis of enzyme-substrate interactions

Author keywords

CYP2 structural template; Cytochrome P450; Modelling; Xenobiotic metabolism and activation

Indexed keywords

3 CYANO 7 ETHOXYCOUMARIN; 3,5 DIMETHYL 2 (3 PYRIDYL) 4 THIAZOLIDINONE; 4 CHLOROMETHYL 7 ETHOXYCOUMARIN; 4 TRIFLUOROMETHYL 7 ETHOXYCOUMARIN; 7 ETHOXYCOUMARIN; AMFEBUTAMONE; BENZPHETAMINE; BENZYLOXYRESORUFIN; COUMARIN DERIVATIVE; CYTOCHROME P450 101; CYTOCHROME P450 102; CYTOCHROME P450 2B6; CYTOCHROME P450 2C5; DIAZEPAM; ETHOXYCOUMARIN; MEPHENYTOIN; METHOXYCHLOR; PHENAZONE; PICLAMILAST; PNU 249173; RESORUFIN DERIVATIVE; TESTOSTERONE; UNCLASSIFIED DRUG;

EID: 0038076447     PISSN: 07925077     EISSN: None     Source Type: Journal    
DOI: 10.1515/DMDI.2002.19.2.115     Document Type: Article
Times cited : (12)

References (41)
  • 4
    • 0030834058 scopus 로고    scopus 로고
    • Human cytochrome P450 enzymes: A status report summarizing their reactions, substrates, inducers and inhibitors
    • Rendic S, DiCarlo FJ. Human cytochrome P450 enzymes: a status report summarizing their reactions, substrates, inducers and inhibitors. Drug Metab Rev 1997; 29: 413-580.
    • (1997) Drug Metab Rev , vol.29 , pp. 413-580
    • Rendic, S.1    DiCarlo, F.J.2
  • 5
    • 0035062413 scopus 로고    scopus 로고
    • Implications of polymorphic cytochrome P450-dependent drug metabolism for drug development
    • Ingelman-Sundberg M. Implications of polymorphic cytochrome P450-dependent drug metabolism for drug development. Drug Metab Dispos 2001; 29: 570-573.
    • (2001) Drug Metab Dispos , vol.29 , pp. 570-573
    • Ingelman-Sundberg, M.1
  • 6
    • 0032793249 scopus 로고    scopus 로고
    • Polymorphic human cytochrome P450 enzymes: An opportunity for individualized drug treatment
    • Ingelman-Sundberg M, Oscarson M, McLellan RA. Polymorphic human cytochrome P450 enzymes: an opportunity for individualized drug treatment. Trends Pharm Scie 1999; 20: 342-349.
    • (1999) Trends Pharm Scie , vol.20 , pp. 342-349
    • Ingelman-Sundberg, M.1    Oscarson, M.2    McLellan, R.A.3
  • 7
    • 0033569516 scopus 로고    scopus 로고
    • Phannacogenomics: Translating functional genomics into rational therapies
    • Evans WE, Relling MV. Phannacogenomics: translating functional genomics into rational therapies. Science 1999; 286: 487-491.
    • (1999) Science , vol.286 , pp. 487-491
    • Evans, W.E.1    Relling, M.V.2
  • 8
    • 0032811460 scopus 로고    scopus 로고
    • The role of CYP2B6 in human xenobiotic metabolism
    • Ekins S, Wrighton SA. The role of CYP2B6 in human xenobiotic metabolism. Drug Metab Rev 1999; 31: 719-754.
    • (1999) Drug Metab Rev , vol.31 , pp. 719-754
    • Ekins, S.1    Wrighton, S.A.2
  • 9
    • 0036237885 scopus 로고    scopus 로고
    • Triethyl-enethiophosphoramide is a specific inhibitor of cytochrome P450 2B6: Implications for cyclophosphamide metabolism
    • Rae JM, Soukhova NV, Flockhart DA, Desta Z. Triethyl-enethiophosphoramide is a specific inhibitor of cytochrome P450 2B6: implications for cyclophosphamide metabolism. Drug Metab Dispos 2002; 30: 525-530.
    • (2002) Drug Metab Dispos , vol.30 , pp. 525-530
    • Rae, J.M.1    Soukhova, N.V.2    Flockhart, D.A.3    Desta, Z.4
  • 10
    • 0036135826 scopus 로고    scopus 로고
    • Combined three-dimensional quantitative structure-activity relationship analysis of cytochrome P450 2B6 substrates and protein homology modeling
    • Wang Q, Halpert JR. Combined three-dimensional quantitative structure-activity relationship analysis of cytochrome P450 2B6 substrates and protein homology modeling. Drug Metab Dispos 2002; 30: 86-95.
    • (2002) Drug Metab Dispos , vol.30 , pp. 86-95
    • Wang, Q.1    Halpert, J.R.2
  • 11
    • 0033970047 scopus 로고    scopus 로고
    • Mammalian cytochrome P450 monooxygenase: Structural adaptations for membrane binding and functional diversity
    • Williams PA, Cosine J, Sridhar V, Johnson EF, McRee DE. Mammalian cytochrome P450 monooxygenase: structural adaptations for membrane binding and functional diversity. Mol Cell 2000; 5: 121-131.
    • (2000) Mol Cell , vol.5 , pp. 121-131
    • Williams, P.A.1    Cosine, J.2    Sridhar, V.3    Johnson, E.F.4    McRee, D.E.5
  • 12
    • 0036267032 scopus 로고    scopus 로고
    • Homology modelling of human CYP2 family enzymes based on the CYP2C5 crystal structure
    • Lewis DFV. Homology modelling of human CYP2 family enzymes based on the CYP2C5 crystal structure. Xenobiotica 2002; 32: 305-323.
    • (2002) Xenobiotica , vol.32 , pp. 305-323
    • Lewis, D.F.V.1
  • 13
    • 0032910377 scopus 로고    scopus 로고
    • Molecular modelling of CYP2B6, the human CYP2B isoform, by homology with the substrate-bound CYP102 crystal structure: Evaluation of CYP2B6, CYP2B1 and CYP2B4 substrate characteristics
    • Lewis DFV, Lake BF, Dickins M, Eddershaw PJ, Tarbit MH, Goldfarb PS. Molecular modelling of CYP2B6, the human CYP2B isoform, by homology with the substrate-bound CYP102 crystal structure: evaluation of CYP2B6, CYP2B1 and CYP2B4 substrate characteristics. Xenobiotica 1999; 29: 361-393.
    • (1999) Xenobiotica , vol.29 , pp. 361-393
    • Lewis, D.F.V.1    Lake, B.F.2    Dickins, M.3    Eddershaw, P.J.4    Tarbit, M.H.5    Goldfarb, P.S.6
  • 14
    • 0036223831 scopus 로고    scopus 로고
    • Summary of information on human CYP enzymes: Human P450 metabolism data
    • Rendic S. Summary of information on human CYP enzymes: human P450 metabolism data. Drug Metab Rev 2002; 34: 83-448.
    • (2002) Drug Metab Rev , vol.34 , pp. 83-448
    • Rendic, S.1
  • 15
    • 0031877729 scopus 로고    scopus 로고
    • The CYP2 family: Models, mutants and interactions
    • Lewis DFV. The CYP2 family: models, mutants and interactions. Xenobiotica 1998; 28: 617-661.
    • (1998) Xenobiotica , vol.28 , pp. 617-661
    • Lewis, D.F.V.1
  • 16
    • 0034970578 scopus 로고    scopus 로고
    • Analysis of mammalian cytochrome P450 structure and function by site-directed inutagenesis
    • Domanski TL, Halpert JR. Analysis of mammalian cytochrome P450 structure and function by site-directed inutagenesis. Curr Drug Metab 2001; 2: 117-137.
    • (2001) Curr Drug Metab , vol.2 , pp. 117-137
    • Domanski, T.L.1    Halpert, J.R.2
  • 17
    • 0034256965 scopus 로고    scopus 로고
    • On the recognition of mammalian microsomal cytochrome P450 substrates and their characteristics
    • Lewis DFV. On the recognition of mammalian microsomal cytochrome P450 substrates and their characteristics. Biochem Phannacol 2000; 60: 293-306.
    • (2000) Biochem Phannacol , vol.60 , pp. 293-306
    • Lewis, D.F.V.1
  • 18
    • 0034600005 scopus 로고    scopus 로고
    • Structural characteristics of human P450s involved in drug metabolism: QSARs and lipophilicity profiles
    • Lewis DFV. Structural characteristics of human P450s involved in drug metabolism: QSARs and lipophilicity profiles. Toxicology 2000; 144: 197-203.
    • (2000) Toxicology , vol.144 , pp. 197-203
    • Lewis, D.F.V.1
  • 20
    • 0026542989 scopus 로고
    • Substrate recognition sites in cytochrome P450 family 2 (CYP2) proteins inferred from comparative analyses of amino acid and coding nucleotide sequences
    • Gotoh O. Substrate recognition sites in cytochrome P450 family 2 (CYP2) proteins inferred from comparative analyses of amino acid and coding nucleotide sequences. J Biol Chem 1992; 267: 83-90.
    • (1992) J Biol Chem , vol.267 , pp. 83-90
    • Gotoh, O.1
  • 22
    • 0036223228 scopus 로고    scopus 로고
    • Structure-activity relationships for human cytochrome P450 substrates and inhibitors
    • Lewis DFV, Modi S, Dickins M. Structure-activity relationships for human cytochrome P450 substrates and inhibitors. Drug Metab Rev 2002; 34: 69-82.
    • (2002) Drug Metab Rev , vol.34 , pp. 69-82
    • Lewis, D.F.V.1    Modi, S.2    Dickins, M.3
  • 23
    • 0037281964 scopus 로고    scopus 로고
    • Baseline lipophilicity relationships in human cytochromes P450 associated with drug metabolism
    • Lewis DFV. Baseline lipophilicity relationships in human cytochromes P450 associated with drug metabolism. Drug Metab Rev 2003; 35: 1-18.
    • (2003) Drug Metab Rev , vol.35 , pp. 1-18
    • Lewis, D.F.V.1
  • 24
    • 0029833258 scopus 로고    scopus 로고
    • Catalytic role of cytochrome P4502B6 in the N-demethylation of S-mephenytoin
    • Heyn H, White RC, Stevens JC. Catalytic role of cytochrome P4502B6 in the N-demethylation of S-mephenytoin. Drug Metab Dispos 1996; 24: 948-954.
    • (1996) Drug Metab Dispos , vol.24 , pp. 948-954
    • Heyn, H.1    White, R.C.2    Stevens, J.C.3
  • 25
    • 0027946075 scopus 로고
    • Metabolism of the proestrogenic pesticide methoxychlor by hepatic P450 monooxygenases in rats and humans
    • Dehal SS, Kupfer D. Metabolism of the proestrogenic pesticide methoxychlor by hepatic P450 monooxygenases in rats and humans. Drug Metab Dispos 1994; 22: 937-946.
    • (1994) Drug Metab Dispos , vol.22 , pp. 937-946
    • Dehal, S.S.1    Kupfer, D.2
  • 26
    • 0008863769 scopus 로고    scopus 로고
    • Further characterization of human liver CYP2B6 expression and catalytic function
    • Stevens J, Hauer M, Beck J, Voorman R. Further characterization of human liver CYP2B6 expression and catalytic function. Drug Metab Rev 2000; 32: 218.
    • (2000) Drug Metab Rev , vol.32 , pp. 218
    • Stevens, J.1    Hauer, M.2    Beck, J.3    Voorman, R.4
  • 28
    • 0031724344 scopus 로고    scopus 로고
    • Catalytic properties of an expressed cytochrome P450 2B1 from a Wistar-Kyoto rat liver cDNA library
    • Kobayashi Y, Strobel SM, Hopkins NE, Alworth WL, Halpert JR. Catalytic properties of an expressed cytochrome P450 2B1 from a Wistar-Kyoto rat liver cDNA library. Drug Metab Dispos 1998; 26: 1026-1030.
    • (1998) Drug Metab Dispos , vol.26 , pp. 1026-1030
    • Kobayashi, Y.1    Strobel, S.M.2    Hopkins, N.E.3    Alworth, W.L.4    Halpert, J.R.5
  • 29
    • 0342679092 scopus 로고    scopus 로고
    • Elucidation of amino acid residues critical for unique activities of rabbit P4502B5 using hybrid enzymes and reciprocal site-directed mutagenesis with rabbit cytochrome P450 2B4
    • Szklarz GD, He YQ, Kedzie KM, Halpert JR, Burnett VL. Elucidation of amino acid residues critical for unique activities of rabbit P4502B5 using hybrid enzymes and reciprocal site-directed mutagenesis with rabbit cytochrome P450 2B4. Arch Biochem Biophys 1996; 327: 308-318.
    • (1996) Arch Biochem Biophys , vol.327 , pp. 308-318
    • Szklarz, G.D.1    He, Y.Q.2    Kedzie, K.M.3    Halpert, J.R.4    Burnett, V.L.5
  • 30
    • 0027931515 scopus 로고
    • Site-directed mutagenesis of putative substrate recognition sites in cytochrome P450 2B11: Importance of amino acid residues 114, 290 and 363 for substrate specificity
    • Hasler JA, Harlow GR, Szklarz GD, John GH, Kedzie KM, Burnett VL, He YA, Kaminsky LS, Halpert JR. Site-directed mutagenesis of putative substrate recognition sites in cytochrome P450 2B11: importance of amino acid residues 114, 290 and 363 for substrate specificity. Mol Pharmacol 1994; 46: 338-345.
    • (1994) Mol Pharmacol , vol.46 , pp. 338-345
    • Hasler, J.A.1    Harlow, G.R.2    Szklarz, G.D.3    John, G.H.4    Kedzie, K.M.5    Burnett, V.L.6    He, Y.A.7    Kaminsky, L.S.8    Halpert, J.R.9
  • 31
    • 0028264896 scopus 로고
    • Structural determinants of cytochrome P450 2B1 specificity: Evidence of five substrate recognition sites
    • He Y, Luo Z, Klekotka PA, Burnett VL, Halpert JR. Structural determinants of cytochrome P450 2B1 specificity: evidence of five substrate recognition sites. Biochemistry 1994; 33: 4419-4424.
    • (1994) Biochemistry , vol.33 , pp. 4419-4424
    • He, Y.1    Luo, Z.2    Klekotka, P.A.3    Burnett, V.L.4    Halpert, J.R.5
  • 32
    • 0028823597 scopus 로고
    • Site-directed mutagenesis as a tool for molecular modelling of cytochrome P4502B1
    • Szklarz GD, He YA, Halpert JR. Site-directed mutagenesis as a tool for molecular modelling of cytochrome P4502B1. Biochemistry 1995; 34: 14312-14322.
    • (1995) Biochemistry , vol.34 , pp. 14312-14322
    • Szklarz, G.D.1    He, Y.A.2    Halpert, J.R.3
  • 33
    • 0030021980 scopus 로고    scopus 로고
    • Mutagenesis study of Asp-290 in cytochrome P4502B11 using a fusion protein with rat NADPH-cytochrome P450 reductase
    • Harlow GR, Halpert JR. Mutagenesis study of Asp-290 in cytochrome P4502B11 using a fusion protein with rat NADPH-cytochrome P450 reductase. Arch Biochem Biophys 1996; 326: 85-92.
    • (1996) Arch Biochem Biophys , vol.326 , pp. 85-92
    • Harlow, G.R.1    Halpert, J.R.2
  • 34
    • 0030915458 scopus 로고    scopus 로고
    • Functional interaction between amino acid residues 242 and 290 in cytochromes P450 2B1 and 2B11
    • Harlow GR, He YA, Halpert JR. Functional interaction between amino acid residues 242 and 290 in cytochromes P450 2B1 and 2B11. Biochim Biophys Acta 1997; 1338: 259-266.
    • (1997) Biochim Biophys Acta , vol.1338 , pp. 259-266
    • Harlow, G.R.1    He, Y.A.2    Halpert, J.R.3
  • 35
    • 0029006401 scopus 로고
    • Escherichia coli expression of site-directed mutants of cytochrome P450 2B1 from 6 substrate recognition sites: Substrate specificity and inhibitor selectivity studies
    • He YQ, He YA, Halpert JR. Escherichia coli expression of site-directed mutants of cytochrome P450 2B1 from 6 substrate recognition sites: substrate specificity and inhibitor selectivity studies. Chem Res Toxicol 1995; 8: 574-579.
    • (1995) Chem Res Toxicol , vol.8 , pp. 574-579
    • He, Y.Q.1    He, Y.A.2    Halpert, J.R.3
  • 36
    • 0030004087 scopus 로고    scopus 로고
    • Peroxo-iron and oxenoid-iron species as alternative oxygenating agents in cytochrome P450-catalyzed reactions: Switching by threonine-302 to alanine mutagenesis of cytochrome P450 2B4
    • Vaz ADN, Pernecky SJ, Raner GM, Coon MJ. Peroxo-iron and oxenoid-iron species as alternative oxygenating agents in cytochrome P450-catalyzed reactions: switching by threonine-302 to alanine mutagenesis of cytochrome P450 2B4. Proc Natl Acad Sci USA 1996; 93: 4644-4648.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 4644-4648
    • Vaz, A.D.N.1    Pernecky, S.J.2    Raner, G.M.3    Coon, M.J.4
  • 37
    • 0029019040 scopus 로고
    • Characterization of the progesterone 21-hydroxylase activity of canine cytochrome P450 PBD-2/P450 2B11 through reconstitution, heterologous expression and site-directed mutagenesis
    • Born SL, John GH, Harlow GR, Halpert JR. Characterization of the progesterone 21-hydroxylase activity of canine cytochrome P450 PBD-2/P450 2B11 through reconstitution, heterologous expression and site-directed mutagenesis. Drug Metab Dispos 1995; 23: 702-707.
    • (1995) Drug Metab Dispos , vol.23 , pp. 702-707
    • Born, S.L.1    John, G.H.2    Harlow, G.R.3    Halpert, J.R.4
  • 38
    • 0027457924 scopus 로고
    • Engineering of cytochrome P450 2B1 specificity
    • Halpert JR, He Y. Engineering of cytochrome P450 2B1 specificity. J Biol Chem 1993; 268: 4453-4457.
    • (1993) J Biol Chem , vol.268 , pp. 4453-4457
    • Halpert, J.R.1    He, Y.2
  • 39
    • 0028989491 scopus 로고
    • Structural basis of selective cytochrome P450 inhibitor
    • Halpert JR. Structural basis of selective cytochrome P450 inhibitor. Annu Rev Pharmacol Toxicol 1995; 35: 29-53.
    • (1995) Annu Rev Pharmacol Toxicol , vol.35 , pp. 29-53
    • Halpert, J.R.1
  • 40
    • 0345034802 scopus 로고    scopus 로고
    • 2,2′,3,3′,6,6′-Hexachlorobiphenyl hydroxylation by active site mutants of cytochrome P450 2B1 and 2B11
    • Waller SC, He YA, Harlow GR, He YQ, Mash EA, Halpert JR. 2,2′,3,3′,6,6′-Hexachlorobiphenyl hydroxylation by active site mutants of cytochrome P450 2B1 and 2B11. Chem Res Toxicol 1999; 12: 690-699.
    • (1999) Chem Res Toxicol , vol.12 , pp. 690-699
    • Waller, S.C.1    He, Y.A.2    Harlow, G.R.3    He, Y.Q.4    Mash, E.A.5    Halpert, J.R.6
  • 41
    • 0035476494 scopus 로고    scopus 로고
    • The role of cytochrome P450 2B1 substrate recognition site residues 115, 294, 297, 298 and 362 in the oxidation of steroids and 7-alkoxycoumarins
    • Domanski TL, He Y-Q, Scott EE, Wang Q, Halpert JR. The role of cytochrome P450 2B1 substrate recognition site residues 115, 294, 297, 298 and 362 in the oxidation of steroids and 7-alkoxycoumarins. Arch Biochem Biophys 2001; 394: 21-28.
    • (2001) Arch Biochem Biophys , vol.394 , pp. 21-28
    • Domanski, T.L.1    He, Y.-Q.2    Scott, E.E.3    Wang, Q.4    Halpert, J.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.