PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein

Cell

Volumn 95, Issue 5, 1998, Pages 657-667

  Ni, Min ^a   Tepperman, James M ^a   Quail, Peter H ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

HELIX LOOP HELIX PROTEIN; PHYTOCHROME;

ARABIDOPSIS; ARTICLE; CARBOXY TERMINAL SEQUENCE; LIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYTOCHEMISTRY; PLANT SEED; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FAMILY; PROTEIN ISOLATION; TRANSCRIPTION REGULATION;

ARABIDOPSIS;

EID: 0032567039     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)81636-0     Document Type: Article

References (52)

1. Abe, H., Yamaguchi-Shinozaki, K., Urao, T., Iwasaki, T., Hosokawa, D., and Shinozaki, K. (1997). Role of Arabidopsis MYC and MYB homologs in drought-and abscisic acid-regulated gene expression. Plant Cell 9, 1859-1868.
2. Ahmad, M., and Cashmore, A.R. (1996a). Seeing blue: the discovery of cryptochrome. Plant Mol. Biol. 30, 851-861.
3. Ahmad, M., and Cashmore, A.R. (1996b). The pef mutants of Arabidopsis thaliana define lesions early in the phytochrome signaling pathway. Plant J. 10, 1103-1110.
4. Ahmad, M., Jarillo, J.A., Smirnova, O., and Cashmore, A.R. (1998). The CRY1 blue light photoreceptor of Arabidopsis interacts with phytochrome A in vitro. Mol. Cell 1, 939-948.
5. Anderson, S.L., Somers, D.E., Millar, A.J., Hanson, K., Chory, J., and Kay, S.A. (1997). Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock. Plant Cell 9, 1727-1743.
6. Ang, L.-H., Chattopadhyay, S., Wei, N., Oyama, T., Okada, K., Batschauer, A., and Deng, X.-W. (1998). Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development. Mol. Cell 1, 213-222.
7. Atchley, W.R., and Fitch, W.M. (1997). A natural classification of the basic helix-loop-helix class of transcription factors. Proc. Natl. Acad. Sci. USA 94, 5172-5176.
8. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K. (1989). Current Protocols in Molecular Biology, Volumes 1 and 2 (New York: Wiley).
9. Bechtold, N., Ellis, J., and Pelletier, G. (1993). In planta Agrobacterium mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C.R. Acad. Sci. 316, 1194-1199.
10. Chory, J., Chatterjee, M., Cook, R.K., Elich, T., Fankhauser, C., Li, J., Nagpal, P., Neff, M., Pepper, A., Poole, D., et al. (1996). From seed germination to flowering, light controls plant development via the pigment phytochrome. Proc. Natl. Acad. Sci. USA 93, 12066-12071.
11. Creusot, F., Fouillox, E., Dron, M., Lafleuriel, J., Picard, G., Billault, A., Le Paslier, D., Cohen, D., Chabouté, M.-E., Durr, A., et al. (1995). The CIC library: a large insert YAC library for genome mapping in Arabidopsis thaliana. Plant J. 8, 763-770.
12. Darlington, T.K., Wager-Smith, K., Ceriani, M.F., Staknis, D., Gerakis, N., Steeves, T.D.L., Weitz, C.J., Takahashi, J.S., and Kay, S.A. (1998). Closing the circadian loop: CLOCK-induced transcription of its own inhibitors per and tim. Science 280, 1599-1603.
13. de Pater, S., Pham, K., Memelin, J., and Kijne, J. (1997). RAP-1 is an Arabidopsis MYC-like R protein homologue, that binds to G-box sequence motifs. Plant Mol. Biol. 34, 169-174.
14. Deng, X.-W., Caspar, T., and Quail, P.H. (1991). cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis. Genes Dev. 5, 1172-1182.
15. Dunlap, J. (1998). An end in the beginning. Science 280, 1548-1549.
16. Durfee, T., Becherer, K., Chen, P.L., Yeh, S.H., Yang, Y., Kilburn, A.E., Lee, W.H., and Elledge, S.J. (1993). The retinoblastoma protein associates with the protein phosphatase type 1 catalytic subunit. Genes Dev. 7, 555-569.
17. Genoud, T., Millar, A.J., Nishizawa, N., Kay, S.A., Schäfer, E, Nagatani, A., and Chua, N.-H. (1998). An Arabidopsis mutant hypersensitive to red and far-red light signals. Plant Cell 10, 889-904.
18. Guo, H., Yang, H., Mockler, T., and Lin, C. (1998). Regulation of flowering time by Arabidopsis photoreceptors. Science 279, 1360-1363.
19. Harter, K., Kircher, S., Frohnmeyer, H., Krenz, M., Nagy, F., and Schäfer, E. (1994). Light-regulated modification and nuclear translocation of cytosolic G-box binding factors in parsley. Plant Cell 6, 545-559.
20. Hirschfeld, M., Tepperman, J.M., Clack, T., Quail, P.H., and Sharrock, R.A. (1998). Coordination of phytochrome levels in phyB mutants of Arabidopsis as revealed by apoprotein-specific monoclonal antibodies. Genetics 149, 523-535.
21. Hoecker, U., Xu, Y., and Quail, P.H. (1998). SPA1: a new genetic locus involved in phytochrome A-specific signal transduction. Plant Cell 10, 19-33.
22. Huala, E., Oeller, P.W., Liscum, E., Han, I.-S., Larsen, E., and Briggs, W.R. (1997). Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain. Science 278, 2120-2123.
23. Kawagoe, Y., and Murai, N. (1996). A novel basic region/helix-loop-helix protein binds to a G-box motif CACGTG of the bean seed storage protein β-phaseolin gene. Plant Sci. 116, 47-57.
24. Kay, S.A. (1997). PAS, present and future: clues to the origins of circadian clocks. Science 276, 753-754.
25. Kendrick, R.E., and Kronenberg, G.H.M., eds. (1994). Photomorphogenesis in Plants, 2nd Edition (Dordrecht, Netherlands: Kluwer Academic Publishers).
26. Kleber, J.J., Rothenberg, M., Roman, G., Feldmann, K.A., and Ecker, J.R. (1993). CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the Raf family of protein kinases. Cell 72, 427-441.
27. Lagarias, D.M., Wu, S.-H., and Lagarias, J.C. (1995). Atypical phytochrome gene structure in the green alga Mesotaenium caldariorum. Plant Mol. Biol. 29, 1127-1142.
28. Mancinelli, A.L. (1994). The physiology of phytochrome action. In Photomorphogenesis in Plants, 2nd Edition, Kendrick, R.E., and Kronenberg, G.H.M., eds. (Dordrecht, Netherlands: Kluwer Academic Publishers), pp. 211-269.
29. Mathews, S., and Sharrock, R.A. (1997). Phytochrome gene diversity. Plant Cell Environ. 20, 666-671.
30. Menkens, A.E., Schindler, U., and Cashmore, A.R. (1995). The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins. Trends Biochem. Sci. 20, 506-510.
31. Millar, A.J., McGrath, R.B., and Chua, N.-H. (1994). Phytochrome phototransduction pathways. Annu. Rev. Genet. 28, 325-349.
32. Murre, C., Bain, G., van Dijk, M.A., Engel, I., Furnari, B.A., Massari, M.E., Matthews, J.R., Quong, M.W., Rivera, R.R., and Stuiver, M.H. (1994). Structure and function of helix-loop-helix proteins. Biochim. Biophys. Acta 1218, 129-135.
33. Parks, B.M., and Quail, P.H. (1993). hy8, a new class of Arabidopsis long hypocotyl mutants deficient in functional phytochrome A. Plant Cell 5, 39-48.
34. Patikoglou, G., and Burley, S.K. (1997). Eukaryotic transcription factor-DMA complexes. Annu. Rev. Biophys. Biomol. Struct. 26, 289-325.
35. Pratt, L.H. (1994). Distribution and localization of phytochrome within the plant. In Photomorphogenesis in Plants, 2nd Edition, Kendrick, R.E., and Kronenburg, G.H.M., eds. (Dordrecht, Netherlands: Kluwer Academic Publishers), pp. 163-185.
36. Quail, P.M. (1994). Phytochrome genes and their expression. In Photomorphogenesis in Plants, 2nd Edition, Kendrick, R.E., and Kronenberg, G.H.M., eds. (Dordrecht, Netherlands: Kluwer Academic Publishers), pp. 71-104.
37. Quail, P.H. (1997a). An emerging molecular map of the phytochromes. Plant Cell Environ. 20, 657-665.
38. Quail, P.H. (1997b). The phytochromes: a biochemical mechanism of signaling in site? Bioessays 19, 571-579.
39. Quail, P.H., Boylan, M.T., Parks, B.M., Short, T.W., Xu, Y., and Wagner, D. (1995). Phytochromes: photosensory perception and signal transduction. Science 268, 675-680.
40. Restrepo, M.A., Freed, D.D., and Carrington, J.C. (1990). Nuclear transport of plant potyviral proteins. Plant Cell 2, 987-998.
41. Sakamoto, K., and Nagatani, A. (1996). Nuclear localization activity of phytochrome B. Plant J. 10, 859-868.
42. Schäfer, E., Kunkel, T., and Frohnmeyer, H. (1997). Signal transduction in the photocontrol of chalcone synthase gene expression. Plant Cell Environ. 20, 722-727.
43. Sharrock, R.A., and Quail, P.M. (1989). Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. Genes Dev. 3, 1745-1757.
44. Shieh, M.W., Wessier, S.R., and Raikhel, N.V. (1993). Nuclear targeting of the maize R protein requires two nuclear localization sequences. Plant Physiol. 101, 353-361.
45. Smith, H., and Whitelam, G.C. (1997). The shade avoidance syndrome: multiple responses mediated by multiple phytochromes. Plant Cell Environ. 20, 840-844.
46. Terzaghi, W.B., and Cashmore, A.R. (1995). Light-regulated transcription. Annu. Rev. Plant Physiol. Plant Mol. Biol. 445-474.
47. Tobin, E., and Kehoe, D.M. (1994). Phytochrome regulated gene expression. Semin. Cell Biol. 5, 335-346.
48. 2-terminal domains of phytochromes A and B determine their photosensory specificity and differential light lability. Proc. Natl. Acad. Sci. USA 93, 4011-4015.
49. Wagner, D., Hoecker, E., and Quail, P.H. (1997). RED1 is necessary for phytochrome B-mediated red light specific signal transduction in Arabidopsis. Plant Cell 9, 731-743.
50. Wei, N., and Deng, X.-W. (1996). The role of the COP/DET/FUS genes in light control of Arabidopsis seedling development. Plant Physiol. 112, 871-878.
51. Whitelam, G.C., and Devlin, P.F. (1997). Roles of different phytochromes in Arabidopsis photomorphogenesis. Plant Cell Environ. 20, 752-758.
52. Whitelam, G.C., Johnson, E., Peng, J., Carol, P., Anderson, M.L., Cowl, J.S., and Harberd, N.P. (1993). Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white light. Plant Cell 5, 757-768.