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85031204263
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Compound 1 synthesis 0.5 g Fmoc-Rink amide MBHA resin Novabiochem (San Diego, CA) was deprotected with 2×5 min 20% piperidine/DMF. The free amine was acylated with 2 mmol Fmoc-Aib-OH and DIC in DMF for 30 min, deprotected as before, the resulting amine was alkylated with a 1:1:3 Benzylbromide:DIEA:DMF solution for 1 h. Acylation of secondary amines was accomplished by DIC and Bromoacetic acid for 1.5 h. A 20% solution of Phenethylamine in DMSO was added and left overnight (typical yield <50%). The secondary amine acylated with bromoacetic acid/DIC for 30 min. Diaminopropane was added as a 2 M solution in DMSO for 1 h, followed by guanidinylation by 3,5-dimethylpyrazole carboxamidine nitrate (4 mmol 20% DIEA/DMF 50°C 1.5 h) Aldrich (Milwaukee, WI). The reaction vessel was DMF washed after every synthetic step. Reactions were at 35°C unless otherwise noted. MH+ calculated: 510.7 (ave. isotopes) found: 511.3. Typical peptoid synthesis 0.3 g Fmoc-Rink amide MBHA resin was deprotected with 2×5 min 20% piperidine/DMF. Step I: the amine was acylated with excess Bromoacetic acid/DIC for 30 min. Step II: 2 M solutions of primary amines in DMSO were added for 1-2 h. Steps I and II repeated two additional times, followed by guanidinylation of 3-aminopropyl side chains as before. The reaction vessel was DMF washed after every synthetic step.
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85031207987
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SMILES containing defined atoms, bonds, and stereochemistry were converted to 2000 random, low-energy 3-D conformations using distance geometry techniques by Rubicon (Daylight Chemical Information Systems, Irvine, CA), then subjected to 200 steps of conjugate gradient minimization using the MM2* force field (Macromodel/Batchmin, Columbia University, New York, NY).
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Armand P. Dissertation. 1998.
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Armand, P.1
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85031202694
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All compounds were purified using c18 RP-HPLC columns using water (0.1% w/v TFA)/ACN (0.1% w/v TFA) gradients. Analytical HPLC verified sample purity. Compound molecular weight was confirmed on a VG-Quattro II ESI-MS. Circular dichroism measurements were taken with an Aviv 60 DS spectrometer using 0.1 cm path length rectangular quartz cuvettes. Compounds were suspended in 0.010 M sodium phosphate pH 7 at 200-400 μM, filtered, and scanned from 300-191 nm at 25°C. No significant changes in spectral shape were observed from 100-400 μM 2.
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85031201136
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Library synthesis resin was split at i+2 amine coupling and each amine was coupled separately. Recombined resin and proceeded as before.
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85031204337
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For detailed cAMP and binding assays see ref 2.
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