Kinetic analysis of sequence-specific recognition of ssDNA by an autoantibody

Biochemistry

Volumn 42, Issue 14, 2003, Pages 4118-4126

  Beckingham, Jennifer A ^a   Cleary, Joanne ^a   Bobeck, Melissa ^a   Glick, Gary D ^a,b  

^a UNIVERSITY OF MICHIGAN   (United States)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODIES; DNA; HYDROGEN BONDS; THERMODYNAMICS;

SEQUENCE-SPECIFIC BINDING;

BIOCHEMISTRY;

ANTIGEN; AUTOANTIBODY; MONOCLONAL ANTIBODY; MONOCLONAL ANTIBODY 11F8; RNA BINDING PROTEIN; SINGLE STRANDED DNA; THYMINE; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; BINDING KINETICS; BINDING SITE; CONFORMATIONAL TRANSITION; DNA PROTEIN COMPLEX; DNA SEQUENCE; ENERGY; HYDROGEN BOND; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; MOLECULAR STABILITY; MUTATION; PRIORITY JOURNAL; PROTEIN RNA BINDING; SURFACE CHARGE; THERMODYNAMICS;

AUTOANTIBODIES; DNA, SINGLE-STRANDED; ELECTROSTATICS; KINETICS; MUTAGENESIS; PROTEIN BINDING; SPECTROMETRY, FLUORESCENCE; TEMPERATURE;

ANIMALIA;

EID: 0037446751     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi020658k     Document Type: Article

References (45)

1. Eilat, D., and Anderson, W. F. (1994) Mol. Immunol. 31, 1377-1390.
2. Pisetsky, D. S. (2001) Immunol. Res. 22, 119-126.
3. Chmielewski, J., and Schultz, P. (1991) Tetrahedron 47, 2563-2572.
4. Mian, S. A. R., Bradwell, A. R., and Olson, A. J. (1991) J. Mol. Biol. 217, 133-151.
5. Tan, E. M. (1989) Adv. Immunol. 44, 93-151.
6. Waer, M. (1990) Clin. Rheum. 9, Suppl. 1, 111-114.
7. Isenberg, D. A., Ehrenstein, M. R., Longhurst, C., and Kalsi, J. K. (1994) Arthritus Rheum. 37, 169-180.
8. Swanson, P. C., Ackroyd, P. C., and Glick, G. D. (1996) Biochemistry 35, 1624-1633.
9. Swanson, P. C., Yung, R. L., Blatt, N. B., Eagan, M. A., Norris, J. M., Richardson, B. C., Johnson, K. J., and Glick, G. D. (1996) J. Clin. Invest. 97, 1748-1760.
10. Stevens, S. Y., and Glick, G. D. (1999) Biochemistry 38, 560-568.
11. Terada, K., Okuhara, E., Kawarada, Y., and Hirose, S. (1991) Biochem. Biophys. Res. Commun. 174, 323-330 and references therein.
12. Ackroyd, P. C., Cleary, J., and Glick, G. D. (2001) Biochemistry 40, 2911-2922.
13. Beckingham, J. A., and Glick, G. D. (2001) Bioorg. Med. Chem. 9, 2243-2252.
14. Cleary, J., and Glick, G. D. (2003) Biochemistry, 42, 30-41.
15. Blatt, N. B., Bill, R. M., and Glick, G. D. (1998) Hybridoma 17, 33-39.
16. Cupit, P. M., Lorenzen, N., Strachan, G., Kemp, G. J. L., Secombes, C. J., and Cunningham, C. (2001) Virus Res. 81, 47-56.
17. Mallender, W. D., Carrero, J., and Voss, E. W. J. (1996) J. Biol. Chem. 271, 5338-5346.
18. Worn, A., and Pluckthun, A. (2001) J. Mol. Biol. 305, 989-1010.
19. Kozack, R. E., M. J., d. M., and Subramaniam, S. (1995) Biophys. J. 68, 807-814.
20. Weidenhaupt, M., Khalif, M. B., Hugo, H., Choulier, L., Altschuh, D., and Vernet, T. (2002) J. Mol. Recognit. 15, 94-103.
21. Lago, H., Parrott, A. M., Moss, T., Stonehouse, N., and Stockley, P. G. (2001) J. Mol. Biol. 305, 1131-1144.
22. Katsamba, P. S., Myszka, D. G., and Laird-Offringa, I. A. (2001) J. Biol. Chem. 276, 21476-21481.
23. Selzer, T., and Schreiber, G. (1999) J. Mol. Biol. 287, 409-419.
24. Selzer, T., Albeck, S., and Schreiber, G. (2000) Nat. Struct. Biol. 7, 537-541.
25. Myles, T., Le Bonniec, B. F., Betz, A., and Stone, S. R. (2001) Biochemistry 40, 4972-4979.
26. Tanner, J. J., Komissarov, A. A., and Deutscher, S. L. (2001) J. Mol. Biol. 314, 807-822.
27. Herron, J. N., He, X. M., Ballard, D. W., P. R., B., Pace, P. E., Blothwell, A. L. M., Voss, E. W. J., and Edmundson, A. B. (1991) Proteins 11, 159-175.
28. Hart, D. J., Speight, R. E., Cooper, M. A., Sutherland, J. D., and Blackburn, J. M. (1999) Nucleic Acids Res. 27, 1063-1069.
29. Lavoie, T. B., Mohan, S., Lipschultz, C. A., Grivel, J.-C., Li, Y., Mainhart, C. R., Kam-Morgan, L. N. W., Drohan, W. N., and Smith-Gill, S. J. (1999) Mol. Immunol. 36, 1189-1205.
30. Seimiya, M., and Kurosawa, Y. (1996) FEBS Lett. 398, 279-284.
31. Malkov, V. A., and Camerini-Otero, R. D. (1998) J. Mol. Biol. 278, 317-330.
32. Gutfreund, H. (1995) Kinetics for the Life Sciences, Cambridge University Press, Cambridge.
33. Fedoriw, A. M., Liu, H., Anderson, V., and deHaseth, P. L. (1998) Biochemistry 37, 11971-11979.
34. Petri, V., Hsieh, M., Jamison, E., and Brenowitz, M. (1998) Biochemistry 37, 15842-15849.
35. Jencks, W. P. (1969) Catalysis in Chemistry and Enzymology, McGraw-Hill, New York.
36. Stanford, N. P., Szczelkun, M. D., Marko, J. F., and Halford, S. E. (2000) EMBO J. 19, 6546-6557.
37. Stivers, J. T., Pankiewicz, K. W., and Watanabe, K. A. (1999) Biochemistry 38, 952-963.
38. Metzger, A. U., Bayer, P., Willbold, D., Hoffmann, S., Frank, R. W., Goody, R. S., and Rosch, P. (1997) Biochem. Biophys. Res. Commun. 241, 31-36.
39. Tang, Y., and Nilsson, L. (1999) Biophys. J. 77, 1284-1305.
40. Pokkuluri, R. P., Bouthillier, F., Li, Y., Kuderova, A., Lee, J. C., and Cygler, M. (1994) J. Mol. Biol. 243, 283-297.
41. Allain, F. H.-T., Howe, P. W. A., Neuhaus, D., and Varani, G. (1997) EMBO J. 16, 5764-5772.
42. Shiels, J. C., Tuite, J. B., Nolan, S. J., and Baranger, A. M. (2002) Nucleic Acids Res. 30, 550-558.
43. Perez-Canadillas, J.-M., and Varani, G. (2001) Curr. Opin. Struct. Biol. 11, 53-58.
44. Parkhurst, K. M., Richards, R. M., Breowitz, M., and Parkhurst, L. J. (1999) J. Mol. Biol. 289, 1327-1341.
45. Sha, M., Wang, Y., Xiang, T., van Heerden, A., Browning, K. S., and Goss, D. J. (1995) J. Biol. Chem. 270, 29904-29909.