-
1
-
-
0018094892
-
Electrostatic effects in proteins
-
Perutz M.F. Electrostatic effects in proteins. Science. 201:1978;1187-1191.
-
(1978)
Science
, vol.201
, pp. 1187-1191
-
-
Perutz, M.F.1
-
2
-
-
0015505502
-
Conformational equilibria in α-and δ-chymotrypsin. The energetics and importance of the salt bridge
-
Fersht A.R. Conformational equilibria in α-and δ-chymotrypsin. The energetics and importance of the salt bridge. J. Mol. Biol. 64:1972;497-509.
-
(1972)
J. Mol. Biol.
, vol.64
, pp. 497-509
-
-
Fersht, A.R.1
-
3
-
-
0017848335
-
The influence of a single salt bridge on static and dynamic features of the globular solution conformation of the basic pancreatic trypsin inhibitor. 1H and 13C nuclear-magnetic-resonance studies of the native and the transaminated inhibitor
-
Brown L.R., De Marco A., Richarz R., Wagner G., Wuthrich K. The influence of a single salt bridge on static and dynamic features of the globular solution conformation of the basic pancreatic trypsin inhibitor. 1H and 13C nuclear-magnetic-resonance studies of the native and the transaminated inhibitor. Eur. J. Biochem. 88:1978;87-95.
-
(1978)
Eur. J. Biochem.
, vol.88
, pp. 87-95
-
-
Brown, L.R.1
De Marco, A.2
Richarz, R.3
Wagner, G.4
Wuthrich, K.5
-
4
-
-
0020119906
-
A salt bridge stabilizes the helix formed by isolated C-peptide of RNase A
-
Bierzynski A., Kim P.S., Baldwin R.L. A salt bridge stabilizes the helix formed by isolated C-peptide of RNase A. Proc. Natl Acad. Sci. USA. 79:1982;2470-2474.
-
(1982)
Proc. Natl Acad. Sci. USA
, vol.79
, pp. 2470-2474
-
-
Bierzynski, A.1
Kim, P.S.2
Baldwin, R.L.3
-
5
-
-
0026716421
-
Evidence that a salt bridge in the light chain contributes to the physical stability difference between heavy and light human ferritins
-
Santambrogio P., Levi S., Arosio P., Palagi L., Vecchio G., Lawson D.M., et al. Evidence that a salt bridge in the light chain contributes to the physical stability difference between heavy and light human ferritins. J. Biol. Chem. 267:1992;14077-14083.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 14077-14083
-
-
Santambrogio, P.1
Levi, S.2
Arosio, P.3
Palagi, L.4
Vecchio, G.5
Lawson, D.M.6
-
6
-
-
0027497118
-
The energetics of ion-pair and hydrogen-bonding interactions in a helical peptide
-
Scholtz J.M., Qian H., Robbins V.H., Baldwin R.L. The energetics of ion-pair and hydrogen-bonding interactions in a helical peptide. Biochemistry. 32:1993;9668-9676.
-
(1993)
Biochemistry
, vol.32
, pp. 9668-9676
-
-
Scholtz, J.M.1
Qian, H.2
Robbins, V.H.3
Baldwin, R.L.4
-
7
-
-
0027255479
-
Structural and genetic analysis of protein stability
-
Matthews B.W. Structural and genetic analysis of protein stability. Annu. Rev. Biochem. 62:1993;139-160.
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 139-160
-
-
Matthews, B.W.1
-
8
-
-
0028574137
-
Contributions of a hydrogen bond/salt bridge network to the stability of secondary and tertiary structure in lambda repressor
-
Marqusee S., Sauer R.T. Contributions of a hydrogen bond/salt bridge network to the stability of secondary and tertiary structure in lambda repressor. Protein Sci. 3:1994;2217-2225.
-
(1994)
Protein Sci.
, vol.3
, pp. 2217-2225
-
-
Marqusee, S.1
Sauer, R.T.2
-
9
-
-
0028968018
-
Studies on protein stability with T4 lysozyme
-
Matthews B.W. Studies on protein stability with T4 lysozyme. Advan. Protein Chem. 46:1995;249-278.
-
(1995)
Advan. Protein Chem.
, vol.46
, pp. 249-278
-
-
Matthews, B.W.1
-
10
-
-
0030045089
-
Structural and genetic analysis of the folding and function of T4 lysozyme
-
Matthews B.W. Structural and genetic analysis of the folding and function of T4 lysozyme. FASEB J. 10:1996;35-41.
-
(1996)
FASEB J.
, vol.10
, pp. 35-41
-
-
Matthews, B.W.1
-
11
-
-
0030920194
-
Electrostatic interactions across a beta-sheet
-
Blasie C.A., Berg J.M. Electrostatic interactions across a beta-sheet. Biochemistry. 36:1997;6218-6222.
-
(1997)
Biochemistry
, vol.36
, pp. 6218-6222
-
-
Blasie, C.A.1
Berg, J.M.2
-
12
-
-
0031042074
-
Ion-pair and charged hydrogen-bond interactions between histidine and aspartate in a peptide helix
-
Huyghues-Despointes B.M., Baldwin R.L. Ion-pair and charged hydrogen-bond interactions between histidine and aspartate in a peptide helix. Biochemistry. 36:1997;1965-1970.
-
(1997)
Biochemistry
, vol.36
, pp. 1965-1970
-
-
Huyghues-Despointes, B.M.1
Baldwin, R.L.2
-
13
-
-
0031003188
-
Contribution of a salt bridge to the thermostability of DNA binding protein HU from Bacillus stearothermophilus determined by site-directed mutagenesis
-
Kawamura S., Tanaka I., Yamasaki N., Kimura M. Contribution of a salt bridge to the thermostability of DNA binding protein HU from Bacillus stearothermophilus determined by site-directed mutagenesis. J. Biochem. (Tokyo). 121:1997;448-455.
-
(1997)
J. Biochem. (Tokyo)
, vol.121
, pp. 448-455
-
-
Kawamura, S.1
Tanaka, I.2
Yamasaki, N.3
Kimura, M.4
-
14
-
-
0033609475
-
Putative interhelix ion pairs involved in the stability of myoglobin
-
Ramos C.H., Kay M.S., Baldwin R.L. Putative interhelix ion pairs involved in the stability of myoglobin. Biochemistry. 38:1999;9783-9790.
-
(1999)
Biochemistry
, vol.38
, pp. 9783-9790
-
-
Ramos, C.H.1
Kay, M.S.2
Baldwin, R.L.3
-
15
-
-
0033571653
-
Sidechain interactions in parallel beta sheets: The energetics of cross-strand pairings
-
Merkel J.S., Sturtevant J.M., Regan L. Sidechain interactions in parallel beta sheets: the energetics of cross-strand pairings. Struct. Fold. Des. 7:1999;1333-1343.
-
(1999)
Struct. Fold. Des.
, vol.7
, pp. 1333-1343
-
-
Merkel, J.S.1
Sturtevant, J.M.2
Regan, L.3
-
16
-
-
0034673153
-
Contribution of surface salt bridges to protein stability
-
Strop P., Mayo S.L. Contribution of surface salt bridges to protein stability. Biochemistry. 39:2000;1251-1255.
-
(2000)
Biochemistry
, vol.39
, pp. 1251-1255
-
-
Strop, P.1
Mayo, S.L.2
-
17
-
-
0035666516
-
Contribution of engineered electrostatic interactions to the stability of cytosolic malate dehydrogenase
-
Trejo F., Gelpi J.L., Ferrer A., Boronat A., Busquets M., Cortes A. Contribution of engineered electrostatic interactions to the stability of cytosolic malate dehydrogenase. Protein Eng. 14:2001;911-917.
-
(2001)
Protein Eng.
, vol.14
, pp. 911-917
-
-
Trejo, F.1
Gelpi, J.L.2
Ferrer, A.3
Boronat, A.4
Busquets, M.5
Cortes, A.6
-
18
-
-
0036183405
-
Evaluation of the energetic contribution of an ionic network to beta-sheet stability
-
Lassila K.S., Datta D., Mayo S.L. Evaluation of the energetic contribution of an ionic network to beta-sheet stability. Protein Sci. 11:2002;688-690.
-
(2002)
Protein Sci.
, vol.11
, pp. 688-690
-
-
Lassila, K.S.1
Datta, D.2
Mayo, S.L.3
-
19
-
-
0025234587
-
PH-induced denaturation of proteins: A single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme
-
Anderson D.E., Becktel W.J., Dahlquist F.W. pH-induced denaturation of proteins: a single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme. Biochemistry. 29:1990;2403-2408.
-
(1990)
Biochemistry
, vol.29
, pp. 2403-2408
-
-
Anderson, D.E.1
Becktel, W.J.2
Dahlquist, F.W.3
-
20
-
-
0030067976
-
Importance of two buried salt bridges in the stability and folding pathway of barnase
-
Tissot A.C., Vuilleumier S., Fersht A.R. Importance of two buried salt bridges in the stability and folding pathway of barnase. Biochemistry. 35:1996;6786-6794.
-
(1996)
Biochemistry
, vol.35
, pp. 6786-6794
-
-
Tissot, A.C.1
Vuilleumier, S.2
Fersht, A.R.3
-
21
-
-
0025663105
-
Strength and co-operativity of contributions of surface salt bridges to protein stability
-
Horovitz A., Serrano L., Avron B., Bycroft M., Fersht A.R. Strength and co-operativity of contributions of surface salt bridges to protein stability. J. Mol. Biol. 216:1990;1031-1044.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 1031-1044
-
-
Horovitz, A.1
Serrano, L.2
Avron, B.3
Bycroft, M.4
Fersht, A.R.5
-
22
-
-
0025093185
-
Estimating the contribution of engineered surface electrostatic interactions to protein stability by using double-mutant cycles
-
Serrano L., Horovitz A., Avron B., Bycroft M., Fersht A.R. Estimating the contribution of engineered surface electrostatic interactions to protein stability by using double-mutant cycles. Biochemistry. 29:1990;9343-9352.
-
(1990)
Biochemistry
, vol.29
, pp. 9343-9352
-
-
Serrano, L.1
Horovitz, A.2
Avron, B.3
Bycroft, M.4
Fersht, A.R.5
-
23
-
-
0025037308
-
Effects of engineered salt bridges on the stability of subtilisin BPN'
-
Erwin C.R., Barnett B.L., Oliver J.D., Sullivan J.F. Effects of engineered salt bridges on the stability of subtilisin BPN'. Protein Eng. 4:1990;87-97.
-
(1990)
Protein Eng.
, vol.4
, pp. 87-97
-
-
Erwin, C.R.1
Barnett, B.L.2
Oliver, J.D.3
Sullivan, J.F.4
-
24
-
-
0025718955
-
Contributions of engineered surface salt bridges to the stability of T4 lysozyme determined by directed mutagenesis
-
Sun D.P., Sauer U., Nicholson H., Matthews B.W. Contributions of engineered surface salt bridges to the stability of T4 lysozyme determined by directed mutagenesis. Biochemistry. 30:1991;7142-7153.
-
(1991)
Biochemistry
, vol.30
, pp. 7142-7153
-
-
Sun, D.P.1
Sauer, U.2
Nicholson, H.3
Matthews, B.W.4
-
25
-
-
0025911856
-
Surface electrostatic interactions contribute little of stability of barnase
-
Sali D., Bycroft M., Fersht A.R. Surface electrostatic interactions contribute little of stability of barnase. J. Mol. Biol. 220:1991;779-788.
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 779-788
-
-
Sali, D.1
Bycroft, M.2
Fersht, A.R.3
-
26
-
-
0028052741
-
Contribution of a proline residue and a salt bridge to the stability of a type I reverse turn in chymotrypsin inhibitor-2
-
de Prat Gay G., Johnson C.M., Fersht A.R. Contribution of a proline residue and a salt bridge to the stability of a type I reverse turn in chymotrypsin inhibitor-2. Protein Eng. 7:1994;103-108.
-
(1994)
Protein Eng.
, vol.7
, pp. 103-108
-
-
De Prat Gay, G.1
Johnson, C.M.2
Fersht, A.R.3
-
27
-
-
0027949381
-
The net energetic contribution of interhelical electrostatic attractions to coiled-coil stability
-
Zhou N.E., Kay C.M., Hodges R.S. The net energetic contribution of interhelical electrostatic attractions to coiled-coil stability. Protein Eng. 7:1994;1365-1372.
-
(1994)
Protein Eng.
, vol.7
, pp. 1365-1372
-
-
Zhou, N.E.1
Kay, C.M.2
Hodges, R.S.3
-
28
-
-
0028959280
-
Protein destabilization by electrostatic repulsions in the two-stranded alpha-helical coiled-coil/leucine zipper
-
Kohn W.D., Kay C.M., Hodges R.S. Protein destabilization by electrostatic repulsions in the two-stranded alpha-helical coiled-coil/leucine zipper. Protein Sci. 4:1995;237-250.
-
(1995)
Protein Sci.
, vol.4
, pp. 237-250
-
-
Kohn, W.D.1
Kay, C.M.2
Hodges, R.S.3
-
29
-
-
0029919832
-
Design of heterotetrameric coiled coils: Evidence for increased stabilization by Glu(-)-Lys(+) ion pair interactions
-
Fairman R., Chao H.G., Lavoie T.B., Villafranca J.J., Matsueda G.R., Novotny J. Design of heterotetrameric coiled coils: evidence for increased stabilization by Glu(-)-Lys(+) ion pair interactions. Biochemistry. 35:1996;2824-2829.
-
(1996)
Biochemistry
, vol.35
, pp. 2824-2829
-
-
Fairman, R.1
Chao, H.G.2
Lavoie, T.B.3
Villafranca, J.J.4
Matsueda, G.R.5
Novotny, J.6
-
30
-
-
0030014013
-
Investigation of electrostatic interactions in two-stranded coiled-coils through residue shuffling
-
Yu Y., Monera O.D., Hodges R.S., Privalov P.L. Investigation of electrostatic interactions in two-stranded coiled-coils through residue shuffling. Biophys. Chem. 59:1996;299-314.
-
(1996)
Biophys. Chem.
, vol.59
, pp. 299-314
-
-
Yu, Y.1
Monera, O.D.2
Hodges, R.S.3
Privalov, P.L.4
-
31
-
-
0032546758
-
Inter-helical interactions in the leucine zipper coiled coil dimer: PH and salt dependence of coupling energy between charged amino acids
-
Krylov D., Barchi J., Vinson C. Inter-helical interactions in the leucine zipper coiled coil dimer: pH and salt dependence of coupling energy between charged amino acids. J. Mol. Biol. 279:1998;959-972.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 959-972
-
-
Krylov, D.1
Barchi, J.2
Vinson, C.3
-
32
-
-
0035914479
-
Evaluation of the energetic contribution of interhelical coulombic interactions for coiled coil helix orientation specificity
-
McClain D.L., Binfet J.P., Oakley M.G. Evaluation of the energetic contribution of interhelical coulombic interactions for coiled coil helix orientation specificity. J. Mol. Biol. 313:2001;371-383.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 371-383
-
-
McClain, D.L.1
Binfet, J.P.2
Oakley, M.G.3
-
33
-
-
0037117698
-
Contribution of buried lysine residues to the oligomerization specificity and stability of the fos coiled coil
-
Campbell K.M., Sholders A.J., Lumb K.J. Contribution of buried lysine residues to the oligomerization specificity and stability of the fos coiled coil. Biochemistry. 41:2002;4866-4871.
-
(2002)
Biochemistry
, vol.41
, pp. 4866-4871
-
-
Campbell, K.M.1
Sholders, A.J.2
Lumb, K.J.3
-
34
-
-
0029030233
-
Measurement of interhelical electrostatic interactions in the GCN4 leucine zipper
-
Lumb K.J., Kim P.S. Measurement of interhelical electrostatic interactions in the GCN4 leucine zipper. Science. 268:1995;436-439.
-
(1995)
Science
, vol.268
, pp. 436-439
-
-
Lumb, K.J.1
Kim, P.S.2
-
35
-
-
0016688895
-
Electrostatic effects in myoglobin. Application of the modified Tanford-Kirkwood theory to myoglobins from horse, California grey whale, harbor seal, and California sea lion
-
Shire S.J., Hanania G.I., Gurd F.R. Electrostatic effects in myoglobin. Application of the modified Tanford-Kirkwood theory to myoglobins from horse, California grey whale, harbor seal, and California sea lion. Biochemistry. 14:1975;1352-1358.
-
(1975)
Biochemistry
, vol.14
, pp. 1352-1358
-
-
Shire, S.J.1
Hanania, G.I.2
Gurd, F.R.3
-
36
-
-
0021096485
-
Contributions of individual amino acid residues to the structural stability of cetacean myoglobins
-
Flanagan M.A., Garcia-Moreno B., Friend S.H., Feldmann R.J., Scouloudi H., Gurd F.R. Contributions of individual amino acid residues to the structural stability of cetacean myoglobins. Biochemistry. 22:1983;6027-6037.
-
(1983)
Biochemistry
, vol.22
, pp. 6027-6037
-
-
Flanagan, M.A.1
Garcia-Moreno, B.2
Friend, S.H.3
Feldmann, R.J.4
Scouloudi, H.5
Gurd, F.R.6
-
37
-
-
0022248941
-
Calculations of electrostatic energies in proteins. The energetics of ionized groups in bovine pancreatic trypsin inhibitor
-
Russell S.T., Warshel A. Calculations of electrostatic energies in proteins. The energetics of ionized groups in bovine pancreatic trypsin inhibitor. J. Mol. Biol. 185:1985;389-404.
-
(1985)
J. Mol. Biol.
, vol.185
, pp. 389-404
-
-
Russell, S.T.1
Warshel, A.2
-
38
-
-
0021782348
-
PH-dependent processes in proteins
-
Matthew J.B., Gurd F.R., Garcia-Moreno B., Flanagan M.A., March K.L., Shire S.J. pH-dependent processes in proteins. CRC Crit. Rev. Biochem. 18:1985;91-197.
-
(1985)
CRC Crit. Rev. Biochem.
, vol.18
, pp. 91-197
-
-
Matthew, J.B.1
Gurd, F.R.2
Garcia-Moreno, B.3
Flanagan, M.A.4
March, K.L.5
Shire, S.J.6
-
39
-
-
0022522422
-
Calculation of electrostatic interactions in proteins
-
Matthew J.B., Gurd F.R. Calculation of electrostatic interactions in proteins. Methods Enzymol. 130:1986;413-436.
-
(1986)
Methods Enzymol.
, vol.130
, pp. 413-436
-
-
Matthew, J.B.1
Gurd, F.R.2
-
41
-
-
0025191376
-
Charge effects on folded and unfolded proteins
-
Stigter D., Dill K.A. Charge effects on folded and unfolded proteins. Biochemistry. 29:1990;1262-1271.
-
(1990)
Biochemistry
, vol.29
, pp. 1262-1271
-
-
Stigter, D.1
Dill, K.A.2
-
42
-
-
0025197061
-
a's of ionizable groups in proteins: Atomic detail from a continuum electrostatic model
-
a's of ionizable groups in proteins: atomic detail from a continuum electrostatic model. Biochemistry. 29:1990;10219-10225.
-
(1990)
Biochemistry
, vol.29
, pp. 10219-10225
-
-
Bashford, D.1
Karplus, M.2
-
43
-
-
0032563113
-
Electrostatic contributions to the stability of halophilic proteins
-
Elcock A.H., McCammon J.A. Electrostatic contributions to the stability of halophilic proteins. J. Mol. Biol. 280:1998;731-748.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 731-748
-
-
Elcock, A.H.1
McCammon, J.A.2
-
44
-
-
0032573431
-
The stability of salt bridges at high temperatures: Implications for hyperthermophilic proteins
-
Elcock A.H. The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins. J. Mol. Biol. 284:1998;489-502.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 489-502
-
-
Elcock, A.H.1
-
45
-
-
0033654297
-
Generalized born models of macromolecular solvation effects
-
Bashford D., Case D.A. Generalized born models of macromolecular solvation effects. Annu. Rev. Phys. Chem. 51:2000;129-152.
-
(2000)
Annu. Rev. Phys. Chem.
, vol.51
, pp. 129-152
-
-
Bashford, D.1
Case, D.A.2
-
46
-
-
0028204490
-
Do salt bridges stabilize proteins? A continuum electrostatic analysis
-
Hendsch Z.S., Tidor B. Do salt bridges stabilize proteins? A continuum electrostatic analysis. Protein Sci. 3:1994;211-226.
-
(1994)
Protein Sci.
, vol.3
, pp. 211-226
-
-
Hendsch, Z.S.1
Tidor, B.2
-
47
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig B., Nicholls A. Classical electrostatics in biology and chemistry. Science. 268:1995;1144-1149.
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
48
-
-
0033603392
-
Electrostatic contributions to the stability of hyperthermophilic proteins
-
Xiao L., Honig B. Electrostatic contributions to the stability of hyperthermophilic proteins. J. Mol. Biol. 289:1999;1435-1444.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1435-1444
-
-
Xiao, L.1
Honig, B.2
-
49
-
-
0029564595
-
Are buried salt bridges important for protein stability and conformational specificity?
-
Waldburger C.D., Schildbach J.F., Sauer R.T. Are buried salt bridges important for protein stability and conformational specificity? Nature Struct. Biol. 2:1995;122-128.
-
(1995)
Nature Struct. Biol.
, vol.2
, pp. 122-128
-
-
Waldburger, C.D.1
Schildbach, J.F.2
Sauer, R.T.3
-
50
-
-
4243067681
-
Protein stabilization by removal of unsatisfied polar groups: Computational approaches and experimental tests
-
Hendsch Z.S., Jonsson T., Sauer R.T., Tidor B. Protein stabilization by removal of unsatisfied polar groups: computational approaches and experimental tests. Biochemistry. 35:1996;7621-7625.
-
(1996)
Biochemistry
, vol.35
, pp. 7621-7625
-
-
Hendsch, Z.S.1
Jonsson, T.2
Sauer, R.T.3
Tidor, B.4
-
51
-
-
0029864591
-
Direct measurement of salt bridge solvation energies using a peptide model system: Implications for protein stability
-
Wimley W.C., Gawrisch K., Creamer T.P., White S.H. Direct measurement of salt bridge solvation energies using a peptide model system: implications for protein stability. Proc. Natl Acad. Sci. USA. 93:1996;2985-2990.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 2985-2990
-
-
Wimley, W.C.1
Gawrisch, K.2
Creamer, T.P.3
White, S.H.4
-
52
-
-
0033994586
-
Electrostatic strengths of salt bridges in thermophilic and mesophilic glutamate dehydrogenase monomers
-
Kumar S., Ma B., Tsai C.J., Nussinov R. Electrostatic strengths of salt bridges in thermophilic and mesophilic glutamate dehydrogenase monomers. Proteins: Struct. Funct. Genet. 38:2000;368-383.
-
(2000)
Proteins: Struct. Funct. Genet.
, vol.38
, pp. 368-383
-
-
Kumar, S.1
Ma, B.2
Tsai, C.J.3
Nussinov, R.4
-
53
-
-
0033550299
-
Salt bridge stability in monomeric proteins
-
Kumar S., Nussinov R. Salt bridge stability in monomeric proteins. J. Mol. Biol. 293:1999;1241-1255.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 1241-1255
-
-
Kumar, S.1
Nussinov, R.2
-
54
-
-
0035371061
-
Fluctuations in ion pairs and their stabilities in proteins
-
Kumar S., Nussinov R. Fluctuations in ion pairs and their stabilities in proteins. Proteins: Struct. Funct. Genet. 43:2001;433-454.
-
(2001)
Proteins: Struct. Funct. Genet.
, vol.43
, pp. 433-454
-
-
Kumar, S.1
Nussinov, R.2
-
55
-
-
0036708467
-
Relationship between ion pair geometries and electrostatic strengths in proteins
-
Kumar S., Nussinov R. Relationship between ion pair geometries and electrostatic strengths in proteins. Biophys. J. 83:2002;1595-1612.
-
(2002)
Biophys. J.
, vol.83
, pp. 1595-1612
-
-
Kumar, S.1
Nussinov, R.2
-
56
-
-
0036708444
-
Electrostatic Contributions to T4 lysozyme stability: Solvent-exposed charges versus semi-buried salt bridges
-
Dong F., Zhou H.X. Electrostatic Contributions to T4 lysozyme stability: solvent-exposed charges versus semi-buried salt bridges. Biophys. J. 83:2002;1341-1347.
-
(2002)
Biophys. J.
, vol.83
, pp. 1341-1347
-
-
Dong, F.1
Zhou, H.X.2
-
57
-
-
0023234618
-
Comparison of the three-dimensional structures of human, yeast, and oat ubiquitin
-
Vijay-Kumar S., Bugg C.E., Wilkinson K.D., Vierstra R.D., Hatfield P.M., Cook W.J. Comparison of the three-dimensional structures of human, yeast, and oat ubiquitin. J. Biol. Chem. 262:1987;6396-6399.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 6396-6399
-
-
Vijay-Kumar, S.1
Bugg, C.E.2
Wilkinson, K.D.3
Vierstra, R.D.4
Hatfield, P.M.5
Cook, W.J.6
-
59
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
Cornilescu G., Delaglio F., Bax A. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR. 13:1999;289-302.
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
60
-
-
0037129945
-
Electrostatic interactions in ubiquitin: Stabilization of carboxylates by lysine amino groups
-
Sundd M., Iverson N., Ibarra-Molero B., Sanchez-Ruiz J.M., Robertson A.D. Electrostatic interactions in ubiquitin: stabilization of carboxylates by lysine amino groups. Biochemistry. 41:2002;7586-7596.
-
(2002)
Biochemistry
, vol.41
, pp. 7586-7596
-
-
Sundd, M.1
Iverson, N.2
Ibarra-Molero, B.3
Sanchez-Ruiz, J.M.4
Robertson, A.D.5
-
61
-
-
0025420076
-
Measuring and increasing protein stability
-
Pace C.N. Measuring and increasing protein stability. Trends Biotechnol. 8:1990;93-98.
-
(1990)
Trends Biotechnol.
, vol.8
, pp. 93-98
-
-
Pace, C.N.1
-
62
-
-
0026754044
-
A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range
-
Santoro M.M., Bolen D.W. A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range. Biochemistry. 31:1992;4901-4907.
-
(1992)
Biochemistry
, vol.31
, pp. 4901-4907
-
-
Santoro, M.M.1
Bolen, D.W.2
-
63
-
-
0021504608
-
The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus)
-
Carter P.J., Winter G., Wilkinson A.J., Fersht A.R. The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus). Cell. 38:1984;835-840.
-
(1984)
Cell
, vol.38
, pp. 835-840
-
-
Carter, P.J.1
Winter, G.2
Wilkinson, A.J.3
Fersht, A.R.4
-
64
-
-
0021891887
-
Effects of site-specific amino acid modification on protein interactions and biological function
-
Ackers G.K., Smith F.R. Effects of site-specific amino acid modification on protein interactions and biological function. Annu. Rev. Biochem. 54:1985;597-629.
-
(1985)
Annu. Rev. Biochem.
, vol.54
, pp. 597-629
-
-
Ackers, G.K.1
Smith, F.R.2
-
65
-
-
0030322783
-
Double-mutant cycles: A powerful tool for analyzing protein structure and function
-
Horovitz A. Double-mutant cycles: a powerful tool for analyzing protein structure and function. Fold. Des. 1:1996;R121-R126.
-
(1996)
Fold. Des.
, vol.1
-
-
Horovitz, A.1
-
66
-
-
0028203972
-
Accommodation of insertion mutations on the surface and in the interior of staphylococcal nuclease
-
Keefe L.J., Quirk S., Gittis A., Sondek J., Lattman E.E. Accommodation of insertion mutations on the surface and in the interior of staphylococcal nuclease. Protein Sci. 3:1994;391-401.
-
(1994)
Protein Sci.
, vol.3
, pp. 391-401
-
-
Keefe, L.J.1
Quirk, S.2
Gittis, A.3
Sondek, J.4
Lattman, E.E.5
-
67
-
-
0035914470
-
Crystal structures of mutant forms of the Bacillus caldolyticus cold shock protein differing in thermal stability
-
Delbruck H., Mueller U., Perl D., Schmid F.X., Heinemann U. Crystal structures of mutant forms of the Bacillus caldolyticus cold shock protein differing in thermal stability. J. Mol. Biol. 313:2001;359-369.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 359-369
-
-
Delbruck, H.1
Mueller, U.2
Perl, D.3
Schmid, F.X.4
Heinemann, U.5
-
68
-
-
0036005611
-
A structural double-mutant cycle: Estimating the strength of a buried salt bridge in barnase
-
Vaughan C.K., Harryson P., Buckle A.M., Fersht A.R. A structural double-mutant cycle: estimating the strength of a buried salt bridge in barnase. Acta Crystallog. sect. D. 58:2002;591-600.
-
(2002)
Acta Crystallog. sect. D
, vol.58
, pp. 591-600
-
-
Vaughan, C.K.1
Harryson, P.2
Buckle, A.M.3
Fersht, A.R.4
-
69
-
-
0034633994
-
Contribution of salt bridges near the surface of a protein to the conformational stability
-
Takano K., Tsuchimori K., Yamagata Y., Yutani K. Contribution of salt bridges near the surface of a protein to the conformational stability. Biochemistry. 39:2000;12375-12381.
-
(2000)
Biochemistry
, vol.39
, pp. 12375-12381
-
-
Takano, K.1
Tsuchimori, K.2
Yamagata, Y.3
Yutani, K.4
-
70
-
-
0000972810
-
Strength of solvent-exposed salt bridges
-
Luo R., David L., Hung H., Devaney J., Gilson M.K. Strength of solvent-exposed salt bridges. J. Phys. Chem. B. 103:1999;727-736.
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 727-736
-
-
Luo, R.1
David, L.2
Hung, H.3
Devaney, J.4
Gilson, M.K.5
-
71
-
-
0036971209
-
Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices
-
Ermolenko D.N., Thomas S.T., Aurora R., Gronenborn A.M., Makhatadze G.I. Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices. J. Mol. Biol. 322:2002;123-135.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 123-135
-
-
Ermolenko, D.N.1
Thomas, S.T.2
Aurora, R.3
Gronenborn, A.M.4
Makhatadze, G.I.5
-
72
-
-
0033554840
-
Engineering a thermostable protein via optimization of charge-charge interactions on the protein surface
-
Loladze V.V., Ibarra-Molero B., Sanchez-Ruiz J.M., Makhatadze G.I. Engineering a thermostable protein via optimization of charge-charge interactions on the protein surface. Biochemistry. 38:1999;16419-16423.
-
(1999)
Biochemistry
, vol.38
, pp. 16419-16423
-
-
Loladze, V.V.1
Ibarra-Molero, B.2
Sanchez-Ruiz, J.M.3
Makhatadze, G.I.4
-
74
-
-
0025327584
-
Protein stability and electrostatic interactions between solvent exposed charged side chains
-
Akke M., Forsen S. Protein stability and electrostatic interactions between solvent exposed charged side chains. Proteins: Struct. Funct. Genet. 8:1990;23-29.
-
(1990)
Proteins: Struct. Funct. Genet.
, vol.8
, pp. 23-29
-
-
Akke, M.1
Forsen, S.2
-
75
-
-
0032872888
-
Increasing protein stability by altering long-range coulombic interactions
-
Grimsley G.R., Shaw K.L., Fee L.R., Alston R.W., Huyghues-Despointes B.M., Thurlkill R.L., et al. Increasing protein stability by altering long-range coulombic interactions. Protein Sci. 8:1999;1843-1849.
-
(1999)
Protein Sci.
, vol.8
, pp. 1843-1849
-
-
Grimsley, G.R.1
Shaw, K.L.2
Fee, L.R.3
Alston, R.W.4
Huyghues-Despointes, B.M.5
Thurlkill, R.L.6
-
76
-
-
0034620528
-
Rational modification of protein stability by the mutation of charged surface residues
-
Spector S., Wang M., Carp S.A., Robblee J., Hendsch Z.S., Fairman R., et al. Rational modification of protein stability by the mutation of charged surface residues. Biochemistry. 39:2000;872-879.
-
(2000)
Biochemistry
, vol.39
, pp. 872-879
-
-
Spector, S.1
Wang, M.2
Carp, S.A.3
Robblee, J.4
Hendsch, Z.S.5
Fairman, R.6
-
77
-
-
0034100848
-
Two exposed amino acid residues confer thermostability on a cold shock protein
-
Perl D., Mueller U., Heinemann U., Schmid F.X. Two exposed amino acid residues confer thermostability on a cold shock protein. Nature Struct. Biol. 7:2000;380-383.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 380-383
-
-
Perl, D.1
Mueller, U.2
Heinemann, U.3
Schmid, F.X.4
-
78
-
-
0035914477
-
Electrostatic stabilization of a thermophilic cold shock protein
-
Perl D., Schmid F.X. Electrostatic stabilization of a thermophilic cold shock protein. J. Mol. Biol. 313:2001;343-357.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 343-357
-
-
Perl, D.1
Schmid, F.X.2
-
79
-
-
0036303785
-
The effects of ionic strength on protein stability: The cold shock protein family
-
Dominy B.N., Perl D., Schmid F.X., Brooks C.L. III. The effects of ionic strength on protein stability: the cold shock protein family. J. Mol. Biol. 319:2002;541-554.
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 541-554
-
-
Dominy, B.N.1
Perl, D.2
Schmid, F.X.3
Brooks C.L. III4
-
80
-
-
0036228118
-
Distance dependence and salt sensitivity of pairwise, coulombic interactions in a protein
-
Lee K.K., Fitch C.A., Garcia-Moreno E.B. Distance dependence and salt sensitivity of pairwise, coulombic interactions in a protein. Protein Sci. 11:2002;1004-1016.
-
(2002)
Protein Sci.
, vol.11
, pp. 1004-1016
-
-
Lee, K.K.1
Fitch, C.A.2
Garcia-Moreno, E.B.3
-
82
-
-
0347298770
-
Changes in stability upon charge reversal and neutralization substitution in staphylococcal nuclease are dominated by favorable electrostatic effects
-
Schwehm J.M., Fitch C.A., Dang B.N., Garcia-Moreno E.B., Stites W.E. Changes in stability upon charge reversal and neutralization substitution in staphylococcal nuclease are dominated by favorable electrostatic effects. Biochemistry. 42:2003;1118-1128.
-
(2003)
Biochemistry
, vol.42
, pp. 1118-1128
-
-
Schwehm, J.M.1
Fitch, C.A.2
Dang, B.N.3
Garcia-Moreno, E.B.4
Stites, W.E.5
-
83
-
-
0033594989
-
Thermal versus guanidine-induced unfolding of ubiquitin. An analysis in terms of the contributions from charge-charge interactions to protein stability
-
Ibarra-Molero B., Loladze V.V., Makhatadze G.I., Sanchez-Ruiz J.M. Thermal versus guanidine-induced unfolding of ubiquitin. An analysis in terms of the contributions from charge-charge interactions to protein stability. Biochemistry. 38:1999;8138-8149.
-
(1999)
Biochemistry
, vol.38
, pp. 8138-8149
-
-
Ibarra-Molero, B.1
Loladze, V.V.2
Makhatadze, G.I.3
Sanchez-Ruiz, J.M.4
-
84
-
-
33845280446
-
Comparing the polarities of the amino acids: Side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solution
-
Radzicka A., Wolfenden R. Comparing the polarities of the amino acids: side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solution. Biochemistry. 27:1988;1664-1670.
-
(1988)
Biochemistry
, vol.27
, pp. 1664-1670
-
-
Radzicka, A.1
Wolfenden, R.2
-
85
-
-
0030005250
-
Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides
-
Wimley W.C., Creamer T.P., White S.H. Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides. Biochemistry. 35:1996;5109-5124.
-
(1996)
Biochemistry
, vol.35
, pp. 5109-5124
-
-
Wimley, W.C.1
Creamer, T.P.2
White, S.H.3
-
86
-
-
0026010011
-
Analysis of the interaction between charged side chains and the alpha-helix dipole using designed thermostable mutants of phage T4 lysozyme
-
Nicholson H., Anderson D.E., Dao-pin S., Matthews B.W. Analysis of the interaction between charged side chains and the alpha-helix dipole using designed thermostable mutants of phage T4 lysozyme. Biochemistry. 30:1991;9816-9828.
-
(1991)
Biochemistry
, vol.30
, pp. 9816-9828
-
-
Nicholson, H.1
Anderson, D.E.2
Dao-pin, S.3
Matthews, B.W.4
-
87
-
-
0035845493
-
Hydration of the peptide backbone largely defines the thermodynamic propensity scale of residues at the C′ position of the C-capping box of alpha-helices
-
Thomas S.T., Loladze V.V., Makhatadze G.I. Hydration of the peptide backbone largely defines the thermodynamic propensity scale of residues at the C′ position of the C-capping box of alpha-helices. Proc. Natl Acad. Sci. USA. 98:2001;10670-10675.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10670-10675
-
-
Thomas, S.T.1
Loladze, V.V.2
Makhatadze, G.I.3
-
89
-
-
0014995599
-
Correction of light-scattering errors in spectrophotometric protein determinations
-
Winder A.F., Gent W.L. Correction of light-scattering errors in spectrophotometric protein determinations. Biopolymers. 10:1971;1243-1251.
-
(1971)
Biopolymers
, vol.10
, pp. 1243-1251
-
-
Winder, A.F.1
Gent, W.L.2
-
90
-
-
0036136161
-
Removal of surface charge-charge interactions from ubiquitin leaves the protein folded and very stable
-
Loladze V.V., Makhatadze G.I. Removal of surface charge-charge interactions from ubiquitin leaves the protein folded and very stable. Protein Sci. 11:2002;174-177.
-
(2002)
Protein Sci.
, vol.11
, pp. 174-177
-
-
Loladze, V.V.1
Makhatadze, G.I.2
-
91
-
-
0028999630
-
Instrumentation for automated determination of protein stability
-
Stites W.E., Byrne M.P., Aviv J., Kaplan M., Curtis P.M. Instrumentation for automated determination of protein stability. Anal. Biochem. 227:1995;112-122.
-
(1995)
Anal. Biochem.
, vol.227
, pp. 112-122
-
-
Stites, W.E.1
Byrne, M.P.2
Aviv, J.3
Kaplan, M.4
Curtis, P.M.5
-
92
-
-
33947468892
-
Theory of protein titration curves. I. General equations for impenetrable spheres
-
Tanford C., Kirkwood J.G. Theory of protein titration curves. I. General equations for impenetrable spheres. J. Am. Chem. Soc. 79:1957;5333-5339.
-
(1957)
J. Am. Chem. Soc.
, vol.79
, pp. 5333-5339
-
-
Tanford, C.1
Kirkwood, J.G.2
-
93
-
-
0015520587
-
Interpretation of protein titration curves: Application to lysosyme
-
Tanford C., Roxby R. Interpretation of protein titration curves: application to lysosyme. Biochemistry. 11:1972;2192-2198.
-
(1972)
Biochemistry
, vol.11
, pp. 2192-2198
-
-
Tanford, C.1
Roxby, R.2
-
94
-
-
0027980588
-
Thermodynamic study of the acid denaturation of barnase and its dependence on ionic strength: Evidence for residual electrostatic interactions in the acid/thermally denatured state
-
Oliveberg M., Vuilleumier S., Fersht A.R. Thermodynamic study of the acid denaturation of barnase and its dependence on ionic strength: evidence for residual electrostatic interactions in the acid/thermally denatured state. Biochemistry. 33:1994;8826-8832.
-
(1994)
Biochemistry
, vol.33
, pp. 8826-8832
-
-
Oliveberg, M.1
Vuilleumier, S.2
Fersht, A.R.3
-
96
-
-
0028983182
-
a values of the denatured state are on average 0.4 units lower than those of model compounds
-
a values of the denatured state are on average 0.4 units lower than those of model compounds. Biochemistry. 34:1995;9424-9433.
-
(1995)
Biochemistry
, vol.34
, pp. 9424-9433
-
-
Oliveberg, M.1
Arcus, V.L.2
Fersht, A.R.3
-
97
-
-
0028904906
-
Hydrogen bonds and the pH dependence of ovomucoid third domain stability
-
Swint-Kruse L., Robertson A.D. Hydrogen bonds and the pH dependence of ovomucoid third domain stability. Biochemistry. 34:1995;4724-4732.
-
(1995)
Biochemistry
, vol.34
, pp. 4724-4732
-
-
Swint-Kruse, L.1
Robertson, A.D.2
-
98
-
-
0033544710
-
Realistic modeling of the denatured states of proteins allows accurate calculations of the pH dependence of protein stability
-
Elcock A.H. Realistic modeling of the denatured states of proteins allows accurate calculations of the pH dependence of protein stability. J. Mol. Biol. 294:1999;1051-1062.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1051-1062
-
-
Elcock, A.H.1
-
99
-
-
0033551039
-
a values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions
-
a values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions. Biochemistry. 38:1999;4896-4903.
-
(1999)
Biochemistry
, vol.38
, pp. 4896-4903
-
-
Kuhlman, B.1
Luisi, D.L.2
Young, P.3
Raleigh, D.P.4
-
100
-
-
0033852796
-
Charge-charge interactions influence the denatured state ensemble and contribute to protein stability
-
Pace C.N., Alston R.W., Shaw K.L. Charge-charge interactions influence the denatured state ensemble and contribute to protein stability. Protein Sci. 9:2000;1395-1398.
-
(2000)
Protein Sci.
, vol.9
, pp. 1395-1398
-
-
Pace, C.N.1
Alston, R.W.2
Shaw, K.L.3
-
101
-
-
0034700307
-
PH dependence of stability of staphylococcal nuclease: Evidence of substantial electrostatic interactions in the denatured state
-
Whitten S.T., Garcia-Moreno E.B. pH dependence of stability of staphylococcal nuclease: evidence of substantial electrostatic interactions in the denatured state. Biochemistry. 39:2000;14292-14304.
-
(2000)
Biochemistry
, vol.39
, pp. 14292-14304
-
-
Whitten, S.T.1
Garcia-Moreno, E.B.2
-
102
-
-
0037133605
-
A Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins
-
Zhou H.X. A Gaussian-chain model for treating residual charge-charge interactions in the unfolded state of proteins. Proc. Natl Acad. Sci. USA. 99:2002;3569-3574.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 3569-3574
-
-
Zhou, H.X.1
|