Thermal versus guanidine-induced unfolding of ubiquitin. An analysis in terms of the contributions from charge-charge interactions to protein stability

Biochemistry

Volumn 38, Issue 25, 1999, Pages 8138-8149

  Ibarra Molero, Beatriz ^a,c   Loladze, Vakhtang V ^b,d   Makhatadze, George I ^b,d   Sanchez Ruiz, Jose M ^a  

^a UNIVERSITY OF GRANADA   (Spain)

^b TEXAS TECH UNIVERSITY   (United States)

^c PENNSYLVANIA STATE UNIVERSITY   (United States)

^d PENN STATE COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GUANIDINE; UBIQUITIN;

ARTICLE; DIFFERENTIAL SCANNING CALORIMETRY; NUCLEAR MAGNETIC RESONANCE; PH; PRIORITY JOURNAL; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN INTERACTION; PROTEIN STABILITY; THERMODYNAMICS;

AMINO ACIDS; ANIMALS; CALORIMETRY, DIFFERENTIAL SCANNING; CATTLE; CIRCULAR DICHROISM; ELECTROSTATICS; GUANIDINE; HYDROGEN-ION CONCENTRATION; MODELS, CHEMICAL; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN DENATURATION; PROTEIN FOLDING; SACCHAROMYCES CEREVISIAE; SPECTROMETRY, FLUORESCENCE; THERMODYNAMICS; UBIQUITINS;

BOVINAE;

EID: 0033594989     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9905819     Document Type: Article

References (46)

1. Becktel, W. J., and Schellman. J. A. (1987) Biopolymers 26, 1859-1877.
2. Sanchez-Ruiz, J. M. (1995) in Subcelllar Biochemistry, Volume 24: Proteins: Structure, Function and Engineering (Biswas, B. B., and Roy, S., Eds.) pp 133-176, Plenum, New York.
3. Dill, K. A. (1990) Biochemistry 29, 7133-7155.
4. Yang, A.-S., Sharp, K. A., and Honig, B. (1992) J. Mol. Biol. 227, 889-900.
5. Matthews, B. W. (1995) Adv. Protein Chem. 46, 249-278.
6. Makhatadze, G. I., and Privalov, P. L. (1995) Adv. Protein Chem. 47, 307-425.
7. Pace, C. N., Shirley, B. A., McNutt, M., and Gajiwala, K. (1996) FASEB J. 10, 75-83.
8. Luque, I., and Freire, E. (1998) Methods Enzymol. 295, 100-127.
9. Yang, A.-S., and Honig, B. (1993) J. Mol. Biol. 231, 459-474.
10. Ibarra-Molero, B., and Sanchez-Ruiz, J. M. (1996) Biochemistry 35, 14689-14702.
11. Vijay-Kumar, S., Bugg, C. E., and Cook, W. J. (1987) J. Mol. Biol. 194, 531-544.
12. Weber, P. L., Brown, S. C., and Mueller, L. (1987) Biochemistry 26, 7282-7290.
13. Wintrode, P. L., Makhatadze, G. I., and Privalov, P. L. (1994) Proteins: Struct., Funct., Genet. 18, 246-253.
14. Makhatadze, G. I., Lopez, M. M., Richardson, J. M., and Thomas, S. T. (1998) Protein Sci. 7, 689-697.
15. Ibarra-Molero, B., Makhatadze, G. I., and Sanchez-Ruiz, J. M. (1999) Biochim. Biophys. Acta 1429, 384-390.
16. Rashin, A. A., and Honig, B. (1984) J. Mol. Biol. 173, 515-521.
17. Vijay-Kumar, S., Bugg, C. E., Wilkinson, K. D., Vierstra, R. D., Hatfield, P. M., and Cook, W. J. (1987) J. Biol. Chem. 262, 6396-6399.
18. Tanford, C., and Kirkwood, J. G. (1957) J. Am. Chem. Soc. 79, 5333-5339.
19. Matthew, J. B., and Gurd, F. R. N. (1986) Methods Enzymol. 130, 413-453.
20. Bashford, D., and Karplus, M. (1991) J. Phys. Chem. 95, 9556-9561.
21. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-326.
22. Pace, C. N., Shirley, B. A., and Thomson, J. A. (1989) in Protein structure, a practical approach (Creighton, T. E., Ed.) pp 331-330, IRL Press at Oxford University Press, Oxford.
23. Gribenko, A. V., and Makhatadze, G. I. (1998) J. Mol. Biol. 283, 679-694.
24. Harding, M. M., Williams, D. H., and Woolfson, D. N. (1991) Biochemistry 30, 3120-3128.
25. Khorasanizadeh, S., Peters, I. D., Butt, T. R., and Roder, H. (1993) Biochemistry 32, 7054-7063.
26. Shrake, A., and Rupley, J. A. (1973) J. Mol. Biol. 79, 351-372.
27. Chothia, C. (1976) J. Mol. Biol. 105, 1-12.
28. Neves-Petersen, M. T., Martel, P., Petersen, E. I., Drabløs, F., and Petersen, S. B. (1997) Methods Enzymol. 284, 130-153.
29. Jenson, J., Goldstein, G., and Breslow, E. (1980) Biochim. Biophys. Acta 624, 378-385.
30. Pace, C. N., Laurents, D. V., and Thomson, J. A. (1990) Biochemistry 29, 2564-2572.
31. Myers, J. K., Pace, N. C., and Scholtz, J. M. (1995) Protein Sci. 4, 2138-2148.
32. Makhatadze, G. I. (1999) J. Phys. Chem. (in press).
33. Santoro, M. M., and Bolen, D. W. (1992) Biochemistry 31, 4901-4907.
34. Makhatadze, G. I., and Privalov, P. I. (1992) J. Mol. Biol. 226, 491-505.
35. Garcia-Moreno, B. (1994) Methods Enzymol. 240, 645-667.
36. Warwicker, J., and Watson, H. C. (1982) J. Mol. Biol. 157, 671-679.
37. Antosiewicz, J., McCammon, J. A., and Gilson, M. K. (1996) Biochemistry 35, 7819-7833.
38. Still, W. C., Tempczyk, A., Hawley, R. C., and Hendrickson, T. (1990) J. Am. Chem. Soc. 112, 6127-6129.
39. Ghosh, A., Rapp, C. S., and Friesner, R. A. (1998) J. Phys. Chem. B 102, 10983-10990.
40. Zhou, Y. (1998) J. Phys. Chem. B 102, 10615-10621.
41. Del Buono, G. S., Figueirido, F. E., and Levy, R. M. (1994) Proteins: Struct., Funct., Genet. 20, 85-97.
42. Sham, Y. Y., Chu, Z. T., and Warshel, A. (1997) J. Phys. Chem. B 101, 4458-4472.
43. Warshel, A., and Papazyan, A. (1998) Curr. Opin. Struct. Biol. 8, 211-217.
44. Tanford, C., and Roxby, R. (1972) Biochemistry 11, 2192-2198.
45. Callen, B. C. (1985) Thermodynamics and an Introduction to Thermostatistics, 2nd ed., Wiley, New York.
46. Ramos, C. H. I., Kay, M. S., and Baldwin, R. L. (1999) Biochemistry (in press).