Escherichia coli dimethylallyl diphosphate:tRNA dimethylallyltransferase: Essential elements for recognition of tRNA substrates within the anticodon stem-loop

Biochemistry

Volumn 39, Issue 21, 2000, Pages 6546-6553

  Soderberg, Tim ^a   Poulter, C Dale ^a  

^a UNIVERSITY OF UTAH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; DIMETHYLALLYLTRANSFERASE; TRANSFER RNA;

ANTICODON; ARTICLE; CATALYSIS; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME BINDING; ESCHERICHIA COLI; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; RNA STRUCTURE; STEADY STATE;

ALKYL AND ARYL TRANSFERASES; ANTICODON; BASE SEQUENCE; ESCHERICHIA COLI; KINETICS; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; OLIGORIBONUCLEOTIDES; RNA, BACTERIAL; RNA, TRANSFER; SUBSTRATE SPECIFICITY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; FELIS CATUS;

EID: 0034732888     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi992775u     Document Type: Article

References (42)

1. Björk, G. R. (1995) in tRNA: Structure, Biosynthesis and Function, ASM Press, Washington, D.C.
2. Björk. G. R. (1996) in Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd ed., ASM Press, Washington, D.C.
3. Esberg, B., and Björk, G. R. (1995) J. Bacteriol. 177. 1967-1975.
4. Kersten, H. (1984) Prog. Nucleic Acid Res. Mol. Biol. 31, 59-114.
5. Buck, M., McCloskey, J. A, Basile, B., and Ames, B. N. (1982) Nucleic Acids Res. 10, 5649-5662.
6. Janzer, J. J., Raney, J. P., and McLennan, B. D. (1982) Nucleic Acids Res. 10, 5663-5672.
7. Cherayil, J. D., and Lipsett, M. N. (1977) J. Bacteriol. 131, 741-744.
8. Thimmappaya, B., and Cherayil, J. D. (1974) Biochem. Biophys. Res. Commun. 60, 665-672.
9. Buck, M., and Griffiths, E. (1982) Nucleic Acids Res. 10, 2609-2624.
10. Gefter, M. L., and Russell, R. L. (1969) J. Mol. Biol. 39, 145-157.
11. Ericson, J. U., and Björk, G. R. (1991) J. Mol. Biol. 218, 509-516.
12. Vacher, J., Grosjean, H., Houssier, C., and Buckingham, R. H. (1984) J. Mol. Biol. 177, 329-342.
13. Blum, P. H. (1988) J. Bacteriol. 170, 5125-5133.
14. Connolly, D., and Winkler, M. E. (1991) J. Bacteriol. 173, 1711-1721.
15. Bartz, J. K., Kline, L. K., and Söll, D. (1970) Biochem. Biophys. Res. Commun. 40, 1481-1487.
16. Bartz, J. K., and Söll, D. (1972) Biochimie 54, 31-39.
17. Fittler, F., Kline, L. K., and Hall, R. H. (1968) Biochem. Biophys Res. Commun. 31, 571-576.
18. Holtz, J., and Klambt, D. (1975) Hoppe-Seyler's Z. Physiol. Chem. 356, 1459-1464.
19. Holtz, J., and Klambt, D. (1978) Hoppe-Seyler's Z. Physiol. Chem. 359, 89-101.
20. Kline, L. K., Fittler, F., and Hall, R. H. (1969) Biochemistry 8, 4361-4371.
21. Rosenbaum, N., and Gefter, M. L. (1972) J. Biol. Chem. 247, 5675-5680.
22. Moore, J. A., and Poulter, C. D. (1997) Biochemistry 36, 604-614.
23. Leung, H. E., Chen, Y., and Winkler, M. (1997) J. Biol. Chem. 272, 13073-13083.
24. Moore, J. A., Mathis, J. R., and Poulter, C. D. (2000) Biochim. Biophys. Acta (in press).
25. Motorin, Y., Bee, G., Tewari, R., and Grosjean, H. (1997) RNA 3, 721-733.
26. Esberg, B., Eastwood, H.-C., Tsui, H.-C. T., Björk, G. R., and Winklee, M. E. (1999) J. Bacteriol. 181, 7256-7265.
27. Davisson, V. J., Woodside, A. B., Neal, T. R., Stremler, K. E., Muehlbacher, M., and Poulter, C. D. (1986) J. Org. Chem. 51, 4768-4779.
28. Reed, B. C., and Rilling, H. C. (1976) Biochemistry 15, 3739-3745.
29. Merril, C. R., Goldman, D., Sedman, S. A., and Ebert, M. H. (1981) Science 211, 1437-1438.
30. Grosjean, H., Nicoghosian, K., Haumont, E., Söll, D., and Cedergren, R. (1985) Nucleic Acids Res. 13, 5697-5706.
31. Sprinzl, M., Hartmann, T., Meissner, F., Moll, J., and Vorderwulbecke, T. (1987) Nucleic Acids Res. 15, r53-r115.
32. Curnow, A. W., Kung, F., Koch, K., and Garcia, G. A. (1993) Biochemistry 32, 5239-5246.
33. Mathews, D. H., Sabina, J., Zuker, M., and Turner, D. H. (1999) J. Mol. Biol. 288, 911-940.
34. Curnow, A. W., and Garcia, G. A (1995) J. Biol. Chem. 270, 17264-17267.
35. Gupta, R. (1984) J. Biol. Chem. 259, 9461-9471.
36. Yamaizumi, Z., Kuchino, Y., Harada, F., Nishimura, S., and McCloskey, J. A. (1980) J. Biol. Chem. 255, 2220-2225.
37. Barrell, B. G., and Sanger, F. (1969) FEBS Lett. 3, 275-278.
38. Ishikura, H., Yamada, Y., and Nishimura, S. (1971) FEBS Lett. 16, 68-70.
39. Steege, D. A. (1983) Nucleic Acids Res. 11, 3823-3832.
40. Schon, A., Bock, A., Ott, G., Sprinzl, M. and Söll, D. (1989) Nucleic Acids Res. 17, 7159-7165.
41. Hirsh, D. (1971) J. Mol. Biol. 58, 439-458.
42. Goodman, H. M. (1970) Eur. J. Biochem. 13, 461-483.