Plants, their organelles, viruses and transgenes reveal the mechanisms and relevance of post-transcriptional processes. Leysin, VD, Switzerland, February 25-28, 1999

EMBO Journal

Volumn 18, Issue 19, 1999, Pages 5153-5158

  Bailey Serres, Julia ^a   Rochaix, Jean David ^b   Wassenegger, Michael ^c   Filipowicz, Witold ^d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF GENEVA   (Switzerland)

^c FRAUNHOFER GESELLSCHAFT   (Germany)

^d FRIEDRICH MIESCHER INSTITUTE FOR BIOMEDICAL RESEARCH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PLANT DNA;

CELL ORGANELLE; CONFERENCE PAPER; GENE SILENCING; INTRON; MITOCHONDRION; NONHUMAN; PLANT CELL; PLANT VIRUS; PLASTID; PRIORITY JOURNAL; RNA EDITING; RNA SPLICING; RNA TRANSLATION;

GENE SILENCING; INTRONS; ORGANELLES; PLANT PHYSIOLOGY; PLANTS; PROTEIN BIOSYNTHESIS; RNA EDITING; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA SPLICING; TRANSGENES;

EID: 0033214174     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/18.19.5153     Document Type: Conference Paper

References (39)

1. Abler, M.L. and Green, P.J. (1996) Control of mRNA stability in higher plants. Plant Mol. Biol., 32, 63-78.
2. Al-Kaff, N.S., Covey, S.N., Kreike, M.M., Page, A.M., Pinder, R. and Dale, P.J. (1998) Transcriptional and post-transcriptional plant gene silencing in response to a pathogen. Science, 279, 2113-2115.
3. Bailey-Serres, J. (1999) Selective translation of cytoplasmic mRNAs in plants. Trends Plant Sci., 4, 142-148.
4. Bailey-Serres, J. and Gallie, D.R. (eds) (1998) A Look Beyond Transcription: Mechanisms Determining mRNA Stability and Translation in Plants. American Society of Plant Physiologists, Rockwell, MD.
5. Brigneti, G., Voinnet, O., Li, W.X., Ji, L.H., Ding, S.W. and Baulcombe, D.C. (1998) Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. EMBO J., 17, 6739-6746.
6. Brown, J. and Simpson, C.G. (1998) Splice site selection in plant pre-mRNA splicing. Annu. Rev. Plant Physiol., 49, 77-95.
7. Brutnell, T.P., Sawers, R.J.H., Mant, A. and Langdale, J.A. (1999) BUNDLE SHEATH DEFECTIVE2, a novel protein required for post-translational regulation of the rbcL gene of maize. Plant Cell, 11, 849-864.
8. Chaudhuri, S. and Maliga, P. (1997) New insights into plastid RNA editing. Trends Plant Sci., 2, 5-6.
9. Cogoni, C. and Macino, G. (1999) Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase. Nature, 399, 166-169.
10. Curran, J. and Kolakofsky, D. (1989) Scanning independent ribosomal initiation of the Sendai virus Y proteins in vitro and in vivo. EMBO J., 8, 521-526.
11. Domon, C., Lorkovic, Z.J., Valcarcel, J. and Filipowicz, W. (1998) Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants. J. Biol. Chem., 273, 34603-34610.
12. Fütterer, J. and Hohn, T. (1996) Translation in plants - rules and exceptions. Plant Mol. Biol., 32, 159-189.
13. Goldschmidt-Clermont, M. (1998) Coordination of nuclear and chloroplast gene expression in plant cells. Int. Rev. Cytol., 177, 115-180.
14. Hajdukiewicz, P.T., Allison, L.A. and Maliga, P. (1997) The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J., 16, 4041-4048.
15. Hermann, M. and Bock, R. (1999) Transfer of plastid RNA-editing activity to novel sites suggests a critical role for spacing in editing-site recognition. Proc. Natl Acad. Sci. USA, 96, 4856-4861.
16. Holtorf, H., Schob, H., Kunz, C, Waldvogel, R. and Meins, F., Jr (1999) Stochastic and nonstochastic post-transcriptional silencing of chitinase and beta-1,3-glucanase genes involves increased RNA turnover-possible role for ribosome-independent RNA degradation. Plant Cell, 11, 471-484.
17. Ivanov, P.A., Karpova, O.V., Skulachev, M.V., Tomashevskaya, L.L., Rodionova, N.P., Dorokhov, Yu.L. and Atabekov, J.G. (1997) A tobamovirus genome that contains an internal ribosome entry site functional in vitro. Virology, 232, 32-43.
18. Jacobson, A. and Peltz, S.W. (1996) Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells. Annu. Rev. Biochem., 65, 693-739.
19. Lamond, A.I. and Earnshaw, W.C. (1998) Structure and function in the nucleus. Science, 280, 547-553.
20. Le, H., Tanguay, R.L., Balasta, M.L., Wei, C.C., Browning, K.S., Metz, A.M., Goss, D.J. and Gallie, D.R. (1997) The translation initiation factors eIF-iso4G and eIF4B interact with the poly(A)-binding protein and increase its RNA binding activity. J. Biol. Chem., 272, 16247-16255.
21. Liere, K. and Link, G. (1997) Chloroplast endoribonuclease p54 involved in RNA 3′-end processing is regulated by phosphorylation and redox state. Nucleic Acids Res., 25, 2403-2408.
22. Lindbo, J.A., Silva-Rosales, L., Proebsting, W.M. and Dougherty, W.G. (1993) Induction of a highly specific antiviral state in transgenic plants: implications for regulation of gene expression and virus resistance. Plant Cell, 5, 1749-1759.
23. Lopato, S., Kalyna, M., Dorner, S., Kobayashi, R., Krainer, A.R. and Barta, A. (1999) AtSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific planl genes. Genes Dev., 13, 987-1001.
24. Lopez, A.J. (1998) Alternative splicing of pre-mRNA: developmental consequences and mechanisms of regulation. Annu. Rev. Genet., 32, 279-305.
25. Macknight, R. et al. (1997) FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains. Cell, 89, 737-745.
26. 2+-mediated phosphorylation of mRNA cap-binding protein eIF4E in maize roots. Plant J., 19, 21-30.
27. Mette, M.F., van der Winden, J., Matzke, M.A. and Matzke, A.J.M. (1999) Production of aberrant promoter transcripts contributes to methylation and silencing of unlinked homologous promoters in trans. EMBO J., 18, 241-248.
28. Metzlaff, M, O'Dell, M., Cluster, P.D. and Flavell, R.B. (1997) RNA-mediated RNA degradation and chalcone synthase A silencing in petunia Cell, 88, 845-854.
29. Meyer, P. (1995) Understanding and controlling transgene expression. Trends Biotech., 13, 332-337.
30. Nickelsen, J., Fleischmann, M., Boudreau, E., Rahire, M. and Rochaix, J.-D. (1999) Identification of cis-acting RNA leader elements required for chloroplast psbD gene expression in Chlamydomonas reinhardtii. Plant Cell, 11, 957-970.
31. Palauqui, J.C. and Balzergue, S. (1999) Activation of systemic silencing by localised introduction of DNA. Curr. Biol., 9, 59-66.
32. Pélissier, T., Thalmeir, S., Kempe, D., Sänger, H.L. and Wassenegger, M. (1999) Heavy de novo methylation at symmetrical and non-symmetrical sites is a hallmark of RNA-directed DNA methylation. Nucleic Acids Res., 27, 1625-1634.
33. Ruud, K.A., Kuhlow, C, Goss, D.J. and Browning, K.S. (1998) Identification and characterization of a novel cap-binding protein from Arabidopsis thaliana. J. Biol. Chem., 273, 10325-10330.
34. Schiebel, W., Pelissier, T., Riedel, L., Thalmeir, S., Schiebel, R., Kempe, D., Lottspeich, F., Sanger, H.L. and Wassenegger, M. (1998) Isolation of an RNA-directed RNA polymerase-specific cDNA clone from tomato. Plant Cell, 10, 2087-2110.
35. Simpson, G.G. and Filipowicz, W. (1996) Splicing of precursors to mRNA in higher plants: mechanism, regulation and sub-nuclear organisation of the spliceosomal machinery. Plant Mol. Biol., 32, 1-41.
36. Stam, M., Viterbo, A., Mol, J.N. and Kooter, J.M. (1998) Position-dependent methylation and transcriptional silencing of transgenes in inverted T-DNA repeats: implications for posttranscriptional silencing of homologous host genes in plants. Mol. Cell. Biol., 18, 6165-6177.
37. Voinnet, O., Vain, P., Angell, S. and Baulcombe, D.C. (1998) Systemic spread of sequence-specific transgene RNA degradation in plants is initiated by localized introduction of ectopic promoterless DNA. Cell, 95, 177-187.
38. Wells, D.R., Tanguay, R.L., Le, H. and Gallie, D.R. (1998) HSP101 functions as a specific translational regulatory protein whose activity is regulated by nutrient status. Genes Dev., 12, 3236-3251.
39. Yueh, A. and Schneider, R.J. (1996) Selective translation initiation by ribosome jumping in adenovirus-infected and heat-shocked cells. Genes Dev., 10, 1557-1567.