Genome analysis with gene expression microarrays

BioEssays

Volumn 18, Issue 5, 1996, Pages 427-431

  Schena, Mark ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA;

ANIMAL; GENE EXPRESSION; GENETIC PROCEDURES; GENOME; HUMAN; METHODOLOGY; POLYMERASE CHAIN REACTION; REVIEW;

ANIMALS; DNA, COMPLEMENTARY; GENE EXPRESSION; GENETIC TECHNIQUES; GENOME; GENOME, HUMAN; HUMANS; POLYMERASE CHAIN REACTION; RNA, MESSENGER;

EID: 0030139470     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/bies.950180513     Document Type: Article

References (24)

1. Fleischmann, R.D. et al. (1995). Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512.
2. Boguski, M.S. (1994). Bioinformatics. Curr. Opin. Genet. Dev. 4, 383-388.
3. McAdams, H.H. and Shapiro, L. (1995). Circuit simulation of genetic networks. Science 269, 650-656.
4. Alwine, J.C., Kemp, D.J. and Stark, G.R. (1977). Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes. Proc. Natl Acad. Sci. USA 74, 5350-5354.
5. Berk, A.J. and Sharp, P.A. (1977). Sizing and mapping of early adenovirus mRNAs by gel etectrophoresis of S1 endonuclease-digested hybrids. Cell 12, 721-732.
6. Zinn, K., DiMaio, D. and Maniatis, T. (1983). Identification of two distinct regulatory regions adjacent to the human β-interferon gene. Cell 34, 865-879.
7. McKnight, S.L. and Kingsbury, R. (1982). Transcription control signals of a eukaryotic protein-encoding gene. Science 217, 316-324.
8. St John, T.P. and Davis, R. W. (1979). Isolation of galactose-inducible DNA sequences from Saccharomyces cerevisiae by differential plaque filter hybridization. Cell 16, 443-452.
9. Shalon, D. (1995). DNA micro arrays: a new tool for genetic analysis. PhD thesis, Stanford University.
10. Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. (1995). Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470.
11. Fodor, S.P.A., Read, J.L., Pirrung, M.C., Stryer, L., Lu, A.T. and Solas, D. (1991). Light-directed, spatially addressable parallel chemical synthesis. Science 251, 767-773.
12. Southern, E.M., Maskos, U. and Elder, J.K. (1992). Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: Evaluation using experimental models. Genomics 13, 1008-1017.
13. Guo, Z., Guilfoyle, R.A., Thiel, A.J., Wang, R. and Smith, L.M. (1994). Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucl. Acids Res. 22, 5456-5465.
14. Matson, R.S., Rampai, J., Pentoney, S.L., Jr., Anderson, P.O. and Coassin, P. (1995). Biopolymer synthesis on polypropylene supports: Oligonucleotide arrays. Anal. Biochem. 224, 110-116.
15. Weigel, D. and Meyerowitz, E.M. (1994). The ABCs of floral homeotic genes. Cell 78, 203-209.
16. Hofte, H. et al. (1993). An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana. Plant J. 4, 1051-1061.
17. Newman, T. et al. (1994). Genes galore: A summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol. 106, 1241-1255.
18. Schena, M. and Davis, R.W. (1992). HD-Zip proteins: Members of an Arabidopsis homeodomain protein superfamily. Proc. Natl Acad. Sci. USA 89, 3894-3898.
19. Schena, M. and Davis, R.W. (1994). Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families. Proc. Natl Acad. Sci. USA 91, 8393-8397.
20. Kawasaki, E.S. et al. (1988). Diagnosis of chronic myeloid and acute lymphocytic leukemias by detection of leukemia-specific mRNA sequences amplified in vitro. Proc. Natl Acad. Sci. USA 85, 5698-5702.
21. Schena, M., Lloyd, A.M. and Davis, R.W. (1993). The HAT4 gene of Arabidopsis encodes a developmental regulator. Genes Dev. 7, 367-379.
22. McKnight, S.L. and Yamamoto, K.R. (ed.) (1992). Transcriptional Regulation, volumes 1 and 2. Cold Spring Harbor Laboratory Press, New York.
23. Watson, J.D. (1990). The Human Genome Project: Past, present and future. Science 248, 44-49.
24. Green, E.D. and Waterston, R.H. (1991). The Human Genome Project, prospects and implications for clinical medicine. J. Am. Med. Assoc. 266, 1966-1975.