-
1
-
-
0034126848
-
Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes
-
Bernhard, A. E. & Field, K. G. (2000). Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl Environ Microbiol 66, 1587-1594.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1587-1594
-
-
Bernhard, A.E.1
Field, K.G.2
-
2
-
-
0028354883
-
Diversity of cultivable and uncultivable oral spirochetes from a patient with severe destructive periodontitis
-
Choi, B. K., Paster, B. J., Dewhirst, F. E. & Göbel, U. B. (1994). Diversity of cultivable and uncultivable oral spirochetes from a patient with severe destructive periodontitis. Infect Immun 62, 1889-1895.
-
(1994)
Infect Immun
, vol.62
, pp. 1889-1895
-
-
Choi, B.K.1
Paster, B.J.2
Dewhirst, F.E.3
Göbel, U.B.4
-
3
-
-
0029904290
-
Phylogenetic analysis of pathogen-related oral spirochetes
-
Choi, B. K., Wyss, C. & Göbel, U. B. (1996). Phylogenetic analysis of pathogen-related oral spirochetes. J Clin Microbiol 34, 1922-1925.
-
(1996)
J Clin Microbiol
, vol.34
, pp. 1922-1925
-
-
Choi, B.K.1
Wyss, C.2
Göbel, U.B.3
-
4
-
-
0031022859
-
Spirochetes from digital dermatitis lesions in cattle are closely related to treponemes associated with human periodontitis
-
Choi, B. K., Nattermann, H., Grund, S., Haider, W. & Göbel, U. B. (1997). Spirochetes from digital dermatitis lesions in cattle are closely related to treponemes associated with human periodontitis. Int J Syst Bacteriol 47, 175-181.
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 175-181
-
-
Choi, B.K.1
Nattermann, H.2
Grund, S.3
Haider, W.4
Göbel, U.B.5
-
5
-
-
0031882598
-
Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities
-
Clement, B. G., Kehl, L. E., DeBord, K. L. & Kitts, C. L. (1998). Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities. J Microbiol Methods 31, 135-142.
-
(1998)
J Microbiol Methods
, vol.31
, pp. 135-142
-
-
Clement, B.G.1
Kehl, L.E.2
DeBord, K.L.3
Kitts, C.L.4
-
6
-
-
0034085760
-
The diversity of periodontal spirochetes by 16S rRNA analysis
-
Dewhirst, F. E., Tamer, M. A., Ericson, R. E., Lau, C. N., Levanos, V. A., Boches, S. K., Galvin, J. L. & Paster, B. J. (2000). The diversity of periodontal spirochetes by 16S rRNA analysis. Oral Microbiol Immunol 15, 196-202.
-
(2000)
Oral Microbiol Immunol
, vol.15
, pp. 196-202
-
-
Dewhirst, F.E.1
Tamer, M.A.2
Ericson, R.E.3
Lau, C.N.4
Levanos, V.A.5
Boches, S.K.6
Galvin, J.L.7
Paster, B.J.8
-
7
-
-
0034802146
-
Characterization of novel human oral isolates and cloned 16S rDNA sequences that fall in the family Coriobacteriaceae: Description of Olsenella gen. nov., reclassification of Lactobacillus uli as Olsenella uli comb. nov. and description of Olsenella profusa sp. nov.
-
Dewhirst, F. E., Paster, B. J., Tzellas, N., Coleman, B., Downes, J., Spratt, D. A. & Wade, W. G. (2001). Characterization of novel human oral isolates and cloned 16S rDNA sequences that fall in the family Coriobacteriaceae: description of Olsenella gen. nov., reclassification of Lactobacillus uli as Olsenella uli comb. nov. and description of Olsenella profusa sp. nov. Int J Syst Evol Microbiol 51, 1797-1804.
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 1797-1804
-
-
Dewhirst, F.E.1
Paster, B.J.2
Tzellas, N.3
Coleman, B.4
Downes, J.5
Spratt, D.A.6
Wade, W.G.7
-
8
-
-
0033941482
-
Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis
-
Dunbar, J., Ticknor, L. O. & Kuske, C. R. (2000). Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl Environ Microbiol 66, 2943-2950.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2943-2950
-
-
Dunbar, J.1
Ticknor, L.O.2
Kuske, C.R.3
-
9
-
-
0030043408
-
Molecular analysis of microflora associated with dentoalveolar abscesses
-
Dymock, D., Weightman, A. J., Scully, C. & Wade, W. G. (1996). Molecular analysis of microflora associated with dentoalveolar abscesses. J Clin Microbiol 34, 537-542.
-
(1996)
J Clin Microbiol
, vol.34
, pp. 537-542
-
-
Dymock, D.1
Weightman, A.J.2
Scully, C.3
Wade, W.G.4
-
10
-
-
0029032318
-
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
-
Farrelly, V., Rainey, F. A. & Stackebrandt, E. (1995). Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl Environ Microbiol 61, 2798-2801.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 2798-2801
-
-
Farrelly, V.1
Rainey, F.A.2
Stackebrandt, E.3
-
11
-
-
0033770992
-
Bacterial community structure associated with a dimethylsulfonipropionate-producing North Atlantic algal bloom
-
Gonzàlez, J. M., Simó, R., Massana, R., Covert, J. S., Casamayor, E. O., Pedros-Alio, C. & Moran, M. A. (2000). Bacterial community structure associated with a dimethylsulfonipropionate-producing North Atlantic algal bloom. Appl Environ Microbiol 66, 4237-4246.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4237-4246
-
-
Gonzàlez, J.M.1
Simó, R.2
Massana, R.3
Covert, J.S.4
Casamayor, E.O.5
Pedros-Alio, C.6
Moran, M.A.7
-
12
-
-
0026003330
-
Numerical analysis of lipoquinone patterns in monitoring bacterial community dynamics in wastewater treatment systems
-
Hiraishi, A., Morishima, Y. & Takeuchi, J. (1991). Numerical analysis of lipoquinone patterns in monitoring bacterial community dynamics in wastewater treatment systems. J Gen Appl Microbiol 37, 57-70.
-
(1991)
J Gen Appl Microbiol
, vol.37
, pp. 57-70
-
-
Hiraishi, A.1
Morishima, Y.2
Takeuchi, J.3
-
13
-
-
0029115109
-
Polymerase chain reaction amplification and restriction fragment length polymorphism analysis of 16S rRNA genes from methanogens
-
Hiraishi, A., Kamagata, Y. & Nakamura, K. (1995). Polymerase chain reaction amplification and restriction fragment length polymorphism analysis of 16S rRNA genes from methanogens. J Ferment Bioeng 79, 523-529.
-
(1995)
J Ferment Bioeng
, vol.79
, pp. 523-529
-
-
Hiraishi, A.1
Kamagata, Y.2
Nakamura, K.3
-
14
-
-
0034253204
-
Terminal restriction pattern analysis of 16S rRNA genes for the characterization of bacterial communities of activated sludge
-
Hiraishi, A., Iwasaki, M. & Shinjo, H. (2000). Terminal restriction pattern analysis of 16S rRNA genes for the characterization of bacterial communities of activated sludge. J Biosci Bioeng 90, 148-156.
-
(2000)
J Biosci Bioeng
, vol.90
, pp. 148-156
-
-
Hiraishi, A.1
Iwasaki, M.2
Shinjo, H.3
-
15
-
-
0033771591
-
Symbiotic spirochetes in the termite hindgut: Phylogenetic identification of ectosymbiotic spirochetes of oxymonad protists
-
Iida, T., Ohkuma, M., Ohtoko, K. & Kudo, T. (2000). Symbiotic spirochetes in the termite hindgut: phylogenetic identification of ectosymbiotic spirochetes of oxymonad protists. FEMS Microbiol Ecol 34, 17-26.
-
(2000)
FEMS Microbiol Ecol
, vol.34
, pp. 17-26
-
-
Iida, T.1
Ohkuma, M.2
Ohtoko, K.3
Kudo, T.4
-
16
-
-
0001822455
-
A new approach to numerical analyses of microbial quinone profiles in the environment
-
Iwasaki, M. & Hiraishi, A. (1998). A new approach to numerical analyses of microbial quinone profiles in the environment. Microbes Environ 13, 67-76.
-
(1998)
Microbes Environ
, vol.13
, pp. 67-76
-
-
Iwasaki, M.1
Hiraishi, A.2
-
17
-
-
0035319323
-
16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM
-
Kaplan, C. W., Astaire, J. C., Sanders, M. E., Reddy, B. S. & Kitts, C. L. (2001). 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Appl Environ Microbiol 67, 1935-1939.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1935-1939
-
-
Kaplan, C.W.1
Astaire, J.C.2
Sanders, M.E.3
Reddy, B.S.4
Kitts, C.L.5
-
18
-
-
0035040382
-
Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics
-
Kitts, C. L. (2001). Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics. Curr Issues Intest Microbiol 2, 17-25.
-
(2001)
Curr Issues Intest Microbiol
, vol.2
, pp. 17-25
-
-
Kitts, C.L.1
-
19
-
-
0033456272
-
Bacterial diversity within the human subgingival crevice
-
Kroes, I., Lepp, P. W. & Relman, D. A. (1999). Bacterial diversity within the human subgingival crevice. Proc Natl Acad Sci U S A 96, 14547-14552.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 14547-14552
-
-
Kroes, I.1
Lepp, P.W.2
Relman, D.A.3
-
20
-
-
0001857117
-
16S/23S rRNA sequencing
-
Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley
-
Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
21
-
-
0033868844
-
Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae
-
Leser, T. D., Lindecrona, R. H., Jensen, T. K., Jensen, B. B. & Møller, K. (2000). Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae. Appl Environ Microbiol 66, 3290-3296.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3290-3296
-
-
Leser, T.D.1
Lindecrona, R.H.2
Jensen, T.K.3
Jensen, B.B.4
Møller, K.5
-
22
-
-
0033171506
-
Phylogenetic diversity of termite gut spirochaetes
-
Lilburn, T. G., Schmidt, T. M. & Breznak, J. A. (1999). Phylogenetic diversity of termite gut spirochaetes. Environ Microbiol 1, 331-345.
-
(1999)
Environ Microbiol
, vol.1
, pp. 331-345
-
-
Lilburn, T.G.1
Schmidt, T.M.2
Breznak, J.A.3
-
23
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu, W.-T., Marsh, T. L., Cheng, H. & Forney, L. J. (1997). Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63, 4516-4522.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4516-4522
-
-
Liu, W.-T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
24
-
-
0034119122
-
Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants
-
Lukow, T., Dunfield, P. F. & Liesack, W. (2000). Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants. FEMS Microbiol Ecol 32, 241-247.
-
(2000)
FEMS Microbiol Ecol
, vol.32
, pp. 241-247
-
-
Lukow, T.1
Dunfield, P.F.2
Liesack, W.3
-
25
-
-
0033152351
-
Terminal restriction fragment length polymorphism (T-RFLP): An emerging method for characterizing diversity among homologous populations of amplification products
-
Marsh, T. L. (1999). Terminal restriction fragment length polymorphism (T-RFLP): an emerging method for characterizing diversity among homologous populations of amplification products. Curr Opin Microbiol 2, 323-327.
-
(1999)
Curr Opin Microbiol
, vol.2
, pp. 323-327
-
-
Marsh, T.L.1
-
26
-
-
0033868092
-
Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis
-
Marsh, T. L., Saxman, P., Cole, J. & Tiedje, J. (2000). Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis. Appl Environ Microbiol 66, 3616-3620.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3616-3620
-
-
Marsh, T.L.1
Saxman, P.2
Cole, J.3
Tiedje, J.4
-
27
-
-
0032812081
-
Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
-
Moeseneder, M. M., Arrieta, J. M., Muyzer, G., Winter, C. & Herndl, G. J. (1999). Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl Environ Microbiol 65, 3518-3525.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3518-3525
-
-
Moeseneder, M.M.1
Arrieta, J.M.2
Muyzer, G.3
Winter, C.4
Herndl, G.J.5
-
28
-
-
0029902203
-
A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature
-
Moyer, C. L., Tiedje, J. M., Dobbs, F. C. & Karl, D. M. (1996). A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl Environ Microbiol 62, 2501-2507.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2501-2507
-
-
Moyer, C.L.1
Tiedje, J.M.2
Dobbs, F.C.3
Karl, D.M.4
-
29
-
-
0034547801
-
An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
-
Osborn, A. M., Moore, E. R. B. & Timmis, K. N. (2000). An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ Microbiol 2, 39-50.
-
(2000)
Environ Microbiol
, vol.2
, pp. 39-50
-
-
Osborn, A.M.1
Moore, E.R.B.2
Timmis, K.N.3
-
30
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page, R. D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
31
-
-
0030028448
-
Phylogeny of not-yet-cultured spirochetes from termite guts
-
Paster, B. J., Dewhirst, F. E., Cooke, S. M., Fussing, V., Poulsen, L. K. & Breznak, J. A. (1996). Phylogeny of not-yet-cultured spirochetes from termite guts. Appl Environ Microbiol 62, 347-352.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 347-352
-
-
Paster, B.J.1
Dewhirst, F.E.2
Cooke, S.M.3
Fussing, V.4
Poulsen, L.K.5
Breznak, J.A.6
-
32
-
-
0034992657
-
Bacterial diversity in human subgingival plaque
-
Paster, B. J., Boches, S. K., Galvin, J. L., Ericson, R. E., Lau, C. N., Levanos, V. A., Sahasrabudhe, A. & Dewhirst, F. E. (2001). Bacterial diversity in human subgingival plaque. J Bacteriol 183, 3770-3783.
-
(2001)
J Bacteriol
, vol.183
, pp. 3770-3783
-
-
Paster, B.J.1
Boches, S.K.2
Galvin, J.L.3
Ericson, R.E.4
Lau, C.N.5
Levanos, V.A.6
Sahasrabudhe, A.7
Dewhirst, F.E.8
-
33
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
34
-
-
0033008326
-
Detection of Treponema socranskii associated with human periodontitis by PCR
-
Sakamoto, M., Takeuchi, Y., Umeda, M., Ishikawa, I., Benno, Y. & Nakase, T. (1999). Detection of Treponema socranskii associated with human periodontitis by PCR. Microbiol Immunol 43, 485-490.
-
(1999)
Microbiol Immunol
, vol.43
, pp. 485-490
-
-
Sakamoto, M.1
Takeuchi, Y.2
Umeda, M.3
Ishikawa, I.4
Benno, Y.5
Nakase, T.6
-
35
-
-
0033851746
-
Comparison of the oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries
-
Sakamoto, M., Umeda, M., Ishikawa, I. & Benno, Y. (2000). Comparison of the oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries. Microbiol Immunol 44, 643-652.
-
(2000)
Microbiol Immunol
, vol.44
, pp. 643-652
-
-
Sakamoto, M.1
Umeda, M.2
Ishikawa, I.3
Benno, Y.4
-
36
-
-
0035128715
-
Rapid detection and quantification of five periodontopathic bacteria by real-time PCR
-
Sakamoto, M., Takeuchi, Y., Umeda, M., Ishikawa, I. & Benno, Y. (2001). Rapid detection and quantification of five periodontopathic bacteria by real-time PCR. Microbiol Immunol 45, 39-44.
-
(2001)
Microbiol Immunol
, vol.45
, pp. 39-44
-
-
Sakamoto, M.1
Takeuchi, Y.2
Umeda, M.3
Ishikawa, I.4
Benno, Y.5
-
37
-
-
0035989525
-
Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov.
-
Sakamoto, M., Suzuki, M., Umeda, M., Ishikawa, I. & Benno, Y. (2002). Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov. Int J Syst Evol Microbiol 52, 841-849.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 841-849
-
-
Sakamoto, M.1
Suzuki, M.2
Umeda, M.3
Ishikawa, I.4
Benno, Y.5
-
38
-
-
0033080848
-
Diversity of oral asaccharolytic Eubacterium species in periodontitis-identification of novel phylotypes representing uncultivated taxa
-
Spratt, D. A., Weightman, A. J. & Wade, W. G. (1999). Diversity of oral asaccharolytic Eubacterium species in periodontitis-identification of novel phylotypes representing uncultivated taxa. Oral Microbiol Immunol 14, 56-59.
-
(1999)
Oral Microbiol Immunol
, vol.14
, pp. 56-59
-
-
Spratt, D.A.1
Weightman, A.J.2
Wade, W.G.3
-
39
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki, M. T. & Giovannoni, S. J. (1996). Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62, 625-630.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
40
-
-
0032110676
-
The utility of whole saliva to detect the oral presence of periodontopathic bacteria
-
Umeda, M., Contreras, A., Chen, C., Bakker, I. & Slots, J. (1998). The utility of whole saliva to detect the oral presence of periodontopathic bacteria. J Periodontol 69, 828-833.
-
(1998)
J Periodontol
, vol.69
, pp. 828-833
-
-
Umeda, M.1
Contreras, A.2
Chen, C.3
Bakker, I.4
Slots, J.5
|