Comparison of the oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries

Microbiology and Immunology

Volumn 44, Issue 8, 2000, Pages 643-652

  Sakamoto, Mitsuo ^a   Umeda, Makoto ^b   Ishikawa, Isao ^b   Benno, Yoshimi ^a  

^a RIKEN BIORESOURCE CENTER   (Japan)

^b TOKYO MEDICAL AND DENTAL UNIVERSITY   (Japan)

Author keywords

16S rDNA library; Periodontal disease; Phylogenetic analysis; Saliva

Indexed keywords

RIBOSOME DNA;

ADULT; ARTICLE; BACTERIAL GENETICS; BACTERIUM IDENTIFICATION; CAMPYLOBACTER; CASE REPORT; CONTROLLED STUDY; FEMALE; HUMAN; MALE; MOUTH FLORA; NUCLEOTIDE SEQUENCE; PERIODONTITIS; PHYLOGENY; PORPHYROMONAS GINGIVALIS; PREVOTELLA INTERMEDIA; SALIVA; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TREPONEMA; UNINDEXED SEQUENCE;

ADULT; AGED; BACTERIA; DNA, RIBOSOMAL; FEMALE; GENE LIBRARY; GENES, BACTERIAL; HUMANS; MALE; MIDDLE AGED; PERIODONTITIS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SALIVA; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); CAMPYLOBACTER; CAMPYLOBACTER RECTUS; FIRMICUTES; PORPHYROMONAS GINGIVALIS; POSIBACTERIA; PREVOTELLA INTERMEDIA; RECTUS; TREPONEMA; TREPONEMA SOCRANSKII;

EID: 0033851746     PISSN: 03855600     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1348-0421.2000.tb02545.x     Document Type: Article

References (28)

1. Basic local alignment search tool
2. Phylogenetic identification and in situ detection of individual microbial cells without cultivation
3. Diversity of cultivable and uncultivable oral spirochetes from a patient with severe destructive periodontitis
4. Phylogenetic analysis of pathogen-related oral spirochetes
5. The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
6. Molecular analysis of microflora associated with dentoalveolar abscesses
7. Megasphaera cerevisiae sp. nov.: A new gram-negative obligately anaerobic coccus isolated from spoiled beer
8. Confidence limits of phylogenies: An approach using the bootstrap
9. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans
10. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
11. 16S/23S rRNA sequencing
12. A new version of the RDP (Ribosomal Database Project)
13. Bacteriology of severe periodontitis in young adult humans
14. Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus
15. Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria
16. Phylogeny of not-yet-cultured spirochetes from termite guts
17. Phylogenetic analysis of cultivable oral treponemes from the Smibert collection
18. Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park
19. The neighbor-joining method: A new method for constructing phylogenetic trees
20. Detection of Treponema socranskii associated with human periodontitis by PCR
21. Diversity of oral asaccharolytic Eubacterium species in periodontitis - Identification of novel phylotypes representing uncultivated taxa
22. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
23. Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries
24. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
25. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes
26. Bacterial diversity of a Carolina bay as determined by 16S rRNA gene analysis: Confirmation of novel taxa
27. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA