메뉴 건너뛰기




Volumn 31, Issue 3, 1998, Pages 135-142

Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities

Author keywords

16S rRNA; Bacterial communities; PCR; Principal components analysis; Restriction analysis; TRFP

Indexed keywords

BACTERIAL RNA; RIBOSOME DNA;

EID: 0031882598     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7012(97)00105-X     Document Type: Article
Times cited : (219)

References (19)
  • 1
    • 0029970177 scopus 로고    scopus 로고
    • Identifying microbial diversity in the natural environment: A molecular phylogenetic approach
    • [1] P. Hugenholtz, N.R. Pace, Identifying microbial diversity in the natural environment: a molecular phylogenetic approach, TIBTech 14 (1996) 190-197.
    • (1996) TIBTech , vol.14 , pp. 190-197
    • Hugenholtz, P.1    Pace, N.R.2
  • 3
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • [3] D.M. Ward, R. Weller, M.M. Bateson, 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community, Nature 344 (1990) 63-65.
    • (1990) Nature , vol.344 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 4
    • 0029881547 scopus 로고    scopus 로고
    • PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples
    • [4] R.-F. Wang, C. Wei-Wen, C.E. Cerniglia, PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples, Appl. Environ. Microbiol. 62 (1996) 1242-1247.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1242-1247
    • Wang, R.-F.1    Wei-Wen, C.2    Cerniglia, C.E.3
  • 5
    • 0029668450 scopus 로고    scopus 로고
    • Diversity of uncultured microorganisms associated with the seagrass halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
    • [5] S. Weidner, W Arnold, A. Puhler, Diversity of uncultured microorganisms associated with the seagrass halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes, Appl. Environ. Microbiol. 62 (1996) 766-771.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 766-771
    • Weidner, S.1    Arnold, W.2    Puhler, A.3
  • 6
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • [6] M.T. Suzuki, S.J. Giovannoni, Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR, Appl. Environ. Microbiol. 62 (1996) 625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 9
    • 0030613341 scopus 로고    scopus 로고
    • Microbial succession during a field evaluation of phenol and toluene as the primary substrates for trichloroethene cometabolism
    • [9] M.R. Fries, G.D. Hopkins, P.L. McCarty, L.J. Forney, J.M. Tiedje, Microbial succession during a field evaluation of phenol and toluene as the primary substrates for trichloroethene cometabolism, Appl. Environ. Microbiol. 63 (1997) 1515-1522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1515-1522
    • Fries, M.R.1    Hopkins, G.D.2    McCarty, P.L.3    Forney, L.J.4    Tiedje, J.M.5
  • 10
    • 0031015322 scopus 로고    scopus 로고
    • Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater
    • [10] A. Massol-Deya, R. Weller, L. Rios-Hernandez, J.-Z. Zhou, R.F. Mickey, J.M. Tiedje, Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater, Appl. Environ. Microbiol. 63 (1997) 270-276.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 270-276
    • Massol-Deya, A.1    Weller, R.2    Rios-Hernandez, L.3    Zhou, J.-Z.4    Mickey, R.F.5    Tiedje, J.M.6
  • 11
    • 0027995162 scopus 로고
    • A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences
    • [11] E. Avaniss-Aghajani, K. Jones, D. Chapman, C. Brunk, A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences, BioTechniques 17 (1994) 144-149.
    • (1994) BioTechniques , vol.17 , pp. 144-149
    • Avaniss-Aghajani, E.1    Jones, K.2    Chapman, D.3    Brunk, C.4
  • 13
    • 0030025916 scopus 로고    scopus 로고
    • A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences
    • [13] C.F. Brunk, E. Avaniss-Aghajani, C.A. Brunk, A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences, Appl. Environ. Microbiol. 62 (1996) 872-879.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 872-879
    • Brunk, C.F.1    Avaniss-Aghajani, E.2    Brunk, C.A.3
  • 15
    • 0002496513 scopus 로고
    • Cold Spring Harbor Laboratory, Cold Spring Harbor NY
    • [15] J.E. Sambrook, F. Fritsch, T. Maniatis, Molecular Cloning, vol. 3, Cold Spring Harbor Laboratory, Cold Spring Harbor NY, 1989, pp. E.3-4.
    • (1989) Molecular Cloning , vol.3
    • Sambrook, J.E.1    Fritsch, F.2    Maniatis, T.3
  • 17
    • 0026808684 scopus 로고
    • Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction
    • [17] K.D. Brace, WD. Hiorns, J.L. Hobman, A.M. Osbom, P. Strike, D.A. Ritchie, Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction, Appl. Environ. Microbiol. 58 (1992) 3413-3416.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3413-3416
    • Brace, K.D.1    Hiorns, W.D.2    Hobman, J.L.3    Osbom, A.M.4    Strike, P.5    Ritchie, D.A.6
  • 19
    • 0010606147 scopus 로고    scopus 로고
    • Multiple heterogeneous 16S rRNA genes in individual species of marine bacterial isolates
    • American Society for Microbiology (ASM), Washington DC
    • [19] L. Kerkhof, M. Voytek, Multiple heterogeneous 16S rRNA genes in individual species of marine bacterial isolates, in: 97th General Meeting Abstracts, American Society for Microbiology (ASM), Washington DC, 1997.
    • (1997) 97th General Meeting Abstracts
    • Kerkhof, L.1    Voytek, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.