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Volumn 34, Issue 4, 2002, Pages 259-264

The DPE, a core promoter element for transcription by RNA polymerase II

Author keywords

Core promoter; DPE; Lnr; RNA polymerase II; TATA

Indexed keywords

RNA POLYMERASE II;

EID: 0037201434     PISSN: 12263613     EISSN: 20926413     Source Type: Journal    
DOI: 10.1038/emm.2002.36     Document Type: Review
Times cited : (96)

References (53)
  • 2
    • 0028899937 scopus 로고
    • Promoter elements in Drosophila melanogaster revealed by sequence analysis
    • Arkhipova IR. Promoter elements in Drosophila melanogaster revealed by sequence analysis. Genetics 1995;139:1359-69
    • (1995) Genetics , vol.139 , pp. 1359-1369
    • Arkhipova, I.R.1
  • 3
    • 0032479079 scopus 로고    scopus 로고
    • Going the distance: A current view of enhancer action
    • Blackwood EM, Kadonaga, JT. Going the distance: A current view of enhancer action. Science 1998;281:60-3
    • (1998) Science , vol.281 , pp. 60-63
    • Blackwood, E.M.1    Kadonaga, J.T.2
  • 4
    • 0019363396 scopus 로고
    • Organization and expression of eucaryotic split genes coding for proteins
    • Breathnach R, Chambon P. Organization and expression of eucaryotic split genes coding for proteins. Annu Rev Biochem 1981;50:349-83
    • (1981) Annu Rev Biochem , vol.50 , pp. 349-383
    • Breathnach, R.1    Chambon, P.2
  • 5
    • 0025278259 scopus 로고
    • Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences
    • Bucher P. Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. J Mol Biol 1990;212:563-78
    • (1990) J Mol Biol , vol.212 , pp. 563-578
    • Bucher, P.1
  • 6
    • 0033215443 scopus 로고    scopus 로고
    • Looping versus linking: Toward a model for long-distance gene activation
    • Bulger M, Groudine M. Looping versus linking: Toward a model for long-distance gene activation. Genes Dev 1999;13:2465-77
    • (1999) Genes Dev , vol.13 , pp. 2465-2477
    • Bulger, M.1    Groudine, M.2
  • 7
    • 0030013203 scopus 로고    scopus 로고
    • Biochemistry and structural biology of transcription factor IID (TFIID)
    • Burley SK, Roeder RG. Biochemistry and structural biology of transcription factor IID (TFIID). Annu Rev Biochem 1996;65:769-99
    • (1996) Annu Rev Biochem , vol.65 , pp. 769-799
    • Burley, S.K.1    Roeder, R.G.2
  • 8
    • 0029971668 scopus 로고    scopus 로고
    • Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters
    • Burke TW, Kadonaga JT. Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters. Genes Dev 1996;10:711-24
    • (1996) Genes Dev , vol.10 , pp. 711-724
    • Burke, T.W.1    Kadonaga, J.T.2
  • 10
    • 0035477093 scopus 로고    scopus 로고
    • Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs
    • Butler JEF, Kadonaga JT. Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs. Genes Dev 2001;15:2515-9
    • (2001) Genes Dev , vol.15 , pp. 2515-2519
    • Butler, J.E.F.1    Kadonaga, J.T.2
  • 11
    • 0037108159 scopus 로고    scopus 로고
    • The RNA polymerase II core promoter: A key component in the regulation of gene expression
    • in press
    • Butler JEF, Kadonaga JT. The RNA polymerase II core promoter: A key component in the regulation of gene expression. Genes Dev 2002; in press
    • (2002) Genes Dev
    • Butler, J.E.F.1    Kadonaga, J.T.2
  • 13
    • 0035499392 scopus 로고    scopus 로고
    • Transcriptional repression: The long and the short of it
    • Courey AJ, Jia S. Transcriptional repression: The long and the short of it. Genes Dev 2001;15:2786-96
    • (2001) Genes Dev , vol.15 , pp. 2786-2796
    • Courey, A.J.1    Jia, S.2
  • 14
    • 0035313754 scopus 로고    scopus 로고
    • Mechanism of transcription initiation and promoter escape by RNA polymerase II
    • Dvir A, Conaway JW, Conaway RC. Mechanism of transcription initiation and promoter escape by RNA polymerase II. Curr Opin Genet Dev 2001;11:209-14
    • (2001) Curr Opin Genet Dev , vol.11 , pp. 209-214
    • Dvir, A.1    Conaway, J.W.2    Conaway, R.C.3
  • 15
    • 0037013153 scopus 로고    scopus 로고
    • Specificity of gene regulation
    • Emerson B. Specificity of gene regulation. Cell 2002;109:267-70
    • (2002) Cell , vol.109 , pp. 267-270
    • Emerson, B.1
  • 16
    • 0035890331 scopus 로고    scopus 로고
    • Activator-mediated disruption of sequence-specific DNA contacts by the general transcription factor TFIIB
    • Evans R, Fairley JA, Roberts SGE. Activator-mediated disruption of sequence-specific DNA contacts by the general transcription factor TFIIB. Genes Dev 2001;15:2945-9
    • (2001) Genes Dev , vol.15 , pp. 2945-2949
    • Evans, R.1    Fairley, J.A.2    Roberts, S.G.E.3
  • 17
    • 0034650893 scopus 로고    scopus 로고
    • The coregulator exchange in transcriptional functions of nuclear receptors
    • Glass CK, Rosenfeld MG. The coregulator exchange in transcriptional functions of nuclear receptors. Genes Dev 2000;14:121-41
    • (2000) Genes Dev , vol.14 , pp. 121-141
    • Glass, C.K.1    Rosenfeld, M.G.2
  • 19
    • 0031840672 scopus 로고    scopus 로고
    • Molecular genetics of the RNA polymerase II general transcription machinery
    • Hampsey M. Molecular genetics of the RNA polymerase II general transcription machinery. Microbiology and Molecular Biology Reviews 1998;62:465-503
    • (1998) Microbiology and Molecular Biology Reviews , vol.62 , pp. 465-503
    • Hampsey, M.1
  • 20
    • 0022474535 scopus 로고
    • Translational and transcriptional control elements in the untranslated leader of the heat-shock gene hsp22
    • Hultmark D, Klemenz R, Gehring WJ. Translational and transcriptional control elements in the untranslated leader of the heat-shock gene hsp22. Cell 1986;44:429-38
    • (1986) Cell , vol.44 , pp. 429-438
    • Hultmark, D.1    Klemenz, R.2    Gehring, W.J.3
  • 21
    • 0028153702 scopus 로고
    • DNA sequence requirements for transcriptional initiator activity in mammalian cells
    • Javahery R, Khachi A, Lo K, Zenzie-Gregory B, Smale ST. DNA sequence requirements for transcriptional initiator activity in mammalian cells. Mol Cell Biol 1994;14:116-27
    • (1994) Mol Cell Biol , vol.14 , pp. 116-127
    • Javahery, R.1    Khachi, A.2    Lo, K.3    Zenzie-Gregory, B.4    Smale, S.T.5
  • 22
    • 0034081817 scopus 로고    scopus 로고
    • The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters
    • Kutach AK, Kadonaga JT. The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters. Mol Cell Biol 2000;20:4754-64
    • (2000) Mol Cell Biol , vol.20 , pp. 4754-4764
    • Kutach, A.K.1    Kadonaga, J.T.2
  • 23
    • 0031882652 scopus 로고    scopus 로고
    • New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB
    • Lagrange T, Kapanidis AN, Tang H, Reinberg D, Ebright RH. New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB. Genes Dev 1998;12:34-44
    • (1998) Genes Dev , vol.12 , pp. 34-44
    • Lagrange, T.1    Kapanidis, A.N.2    Tang, H.3    Reinberg, D.4    Ebright, R.H.5
  • 24
    • 0034507632 scopus 로고    scopus 로고
    • Transcription of eukaryotic protein-coding genes
    • Lee TI, Young RA. Transcription of eukaryotic protein-coding genes. Annu Rev Genet 2000;34:77-137
    • (2000) Annu Rev Genet , vol.34 , pp. 77-137
    • Lee, T.I.1    Young, R.A.2
  • 25
    • 0032580207 scopus 로고    scopus 로고
    • Allosteric effects of DNA on transcriptional regulators
    • Lefstin JA, Yamamoto KR. Allosteric effects of DNA on transcriptional regulators. Nature 1998;392:885-8
    • (1998) Nature , vol.392 , pp. 885-888
    • Lefstin, J.A.1    Yamamoto, K.R.2
  • 26
    • 0034667792 scopus 로고    scopus 로고
    • Orchestrated response: A symphony of transcription factors for gene control
    • Lemon B, Tjian R. Orchestrated response: A symphony of transcription factors for gene control. Genes Dev 2000;14:2551-69
    • (2000) Genes Dev , vol.14 , pp. 2551-2569
    • Lemon, B.1    Tjian, R.2
  • 27
    • 0030571478 scopus 로고    scopus 로고
    • Generality of a functional initiator consensus sequence
    • Lo K, Smale ST. Generality of a functional initiator consensus sequence. Gene 1996;182:13-22
    • (1996) Gene , vol.182 , pp. 13-22
    • Lo, K.1    Smale, S.T.2
  • 28
    • 0033601124 scopus 로고    scopus 로고
    • Repression: Targeting the heart of the matter
    • Maldonado E, Hampsey M, Reinberg D. Repression: Targeting the heart of the matter. Cell 1999;99:455-8
    • (1999) Cell , vol.99 , pp. 455-458
    • Maldonado, E.1    Hampsey, M.2    Reinberg, D.3
  • 29
    • 0037154974 scopus 로고    scopus 로고
    • Combinatorial control of gene expression by nuclear receptors and coregulators
    • McKenna NJ, O'Malley BW. Combinatorial control of gene expression by nuclear receptors and coregulators. Cell 2002; 108:465-74
    • (2002) Cell , vol.108 , pp. 465-474
    • McKenna, N.J.1    O'Malley, B.W.2
  • 30
    • 0032561189 scopus 로고    scopus 로고
    • RNA polymerase II holoenzymes and subcomplexes
    • Myer VE, Young RA. RNA polymerase II holoenzymes and subcomplexes. J Biol Chem 1998;273:27757-60
    • (1998) J Biol Chem , vol.273 , pp. 27757-27760
    • Myer, V.E.1    Young, R.A.2
  • 31
    • 0037154963 scopus 로고    scopus 로고
    • Cooperation between complexes that regulate chromatin structure and transcription
    • Narlikar GJ, Fan HY, Kingston RE. Cooperation between complexes that regulate chromatin structure and transcription. Cell 2002;108:475-87
    • (2002) Cell , vol.108 , pp. 475-487
    • Narlikar, G.J.1    Fan, H.Y.2    Kingston, R.E.3
  • 32
    • 0032519586 scopus 로고    scopus 로고
    • Different core promoters possess distinct regulatory activities in the Drosophila embryo
    • Ohtsuki S, Levine M, Cai HN. Different core promoters possess distinct regulatory activities in the Drosophila embryo. Genes Dev 1998;12:547-56
    • (1998) Genes Dev , vol.12 , pp. 547-556
    • Ohtsuki, S.1    Levine, M.2    Cai, H.N.3
  • 33
    • 0029846871 scopus 로고    scopus 로고
    • The general transcription factors of RNA polymerase II
    • Orphanides G, Lagrange T, Reinberg D. The general transcription factors of RNA polymerase II. Genes Dev 1996; 10:2657-83
    • (1996) Genes Dev , vol.10 , pp. 2657-2683
    • Orphanides, G.1    Lagrange, T.2    Reinberg, D.3
  • 34
    • 0037154982 scopus 로고    scopus 로고
    • A unified theory of gene expression
    • Orphanides G, Reinberg D. A unified theory of gene expression. Cell 2002;108:439-51
    • (2002) Cell , vol.108 , pp. 439-451
    • Orphanides, G.1    Reinberg, D.2
  • 35
    • 0028201744 scopus 로고
    • TFIID sequence recognition of the initiator and sequences farther downstream in Drosophila class II genes
    • Purnell BA, Emanuel PA, Gilmour DS. TFIID sequence recognition of the initiator and sequences farther downstream in Drosophila class II genes. Genes Dev 1994;8:830-42
    • (1994) Genes Dev , vol.8 , pp. 830-842
    • Purnell, B.A.1    Emanuel, P.A.2    Gilmour, D.S.3
  • 36
    • 0032450899 scopus 로고    scopus 로고
    • Role of general and gene-specific cofactors in the regulation of eukaryotic transcription
    • Roeder RG. Role of general and gene-specific cofactors in the regulation of eukaryotic transcription. Cold Spring Harbor Symp Quant Biol 1998;58:201-18
    • (1998) Cold Spring Harbor Symp Quant Biol , vol.58 , pp. 201-218
    • Roeder, R.G.1
  • 37
    • 0024557039 scopus 로고
    • The "initiator" as a transcription control element
    • Smale ST, Baltimore D. The "initiator" as a transcription control element. Cell 1989;57:103-13
    • (1989) Cell , vol.57 , pp. 103-113
    • Smale, S.T.1    Baltimore, D.2
  • 38
    • 0001958556 scopus 로고
    • Core promoter architecture for eukaryotic protein-coding genes
    • (Conaway RC, Conaway JW, eds), Raven Press, New York, NY
    • Smale ST. Core promoter architecture for eukaryotic protein-coding genes. In Transcription: Mechanisms and Regulation. (Conaway RC, Conaway JW, eds), 1994, 63-81, Raven Press, New York, NY
    • (1994) Transcription: Mechanisms and Regulation , pp. 63-81
    • Smale, S.T.1
  • 39
    • 0031579666 scopus 로고    scopus 로고
    • Transcription initiation from TATA-less promoters within eukaryotic protein-coding genes
    • Smale ST. Transcription initiation from TATA-less promoters within eukaryotic protein-coding genes. Biochim Biophys Acta 1997;1351:73-88
    • (1997) Biochim Biophys Acta , vol.1351 , pp. 73-88
    • Smale, S.T.1
  • 41
    • 0035477896 scopus 로고    scopus 로고
    • Core promoters: Active contributors to combinatorial gene regulation
    • Smale ST. Core promoters: Active contributors to combinatorial gene regulation. Genes Dev 2001;15:2503-8
    • (2001) Genes Dev , vol.15 , pp. 2503-2508
    • Smale, S.T.1
  • 43
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • Strahl BD, Allis CD. The language of covalent histone modifications. Nature 2000;403:41-5
    • (2000) Nature , vol.403 , pp. 41-45
    • Strahl, B.D.1    Allis, C.D.2
  • 44
    • 0023647966 scopus 로고
    • Promoters, activator proteins, and the mechanism of transcriptional initiation in yeast
    • Struhl K. Promoters, activator proteins, and the mechanism of transcriptional initiation in yeast. Cell 1987;49:295-7
    • (1987) Cell , vol.49 , pp. 295-297
    • Struhl, K.1
  • 45
    • 0033538531 scopus 로고    scopus 로고
    • Fundamentally different logic of gene regulation in eukaryotes and prokaryotes
    • Struhl, K. Fundamentally different logic of gene regulation in eukaryotes and prokaryotes. Cell 1999;98:1-4
    • (1999) Cell , vol.98 , pp. 1-4
    • Struhl, K.1
  • 47
    • 0037087628 scopus 로고    scopus 로고
    • A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription
    • Tora L. A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription. Genes Dev 2002;16:673-5
    • (2002) Genes Dev , vol.16 , pp. 673-675
    • Tora, L.1
  • 48
    • 0026447291 scopus 로고
    • Transcription by RNA polymerase II: Initiator-directed formation of transcription-competent complexes
    • Weis L, Reinberg D. Transcription by RNA polymerase II: Initiator-directed formation of transcription-competent complexes. FASEB J 1992;6:3300-9
    • (1992) FASEB J , vol.6 , pp. 3300-3309
    • Weis, L.1    Reinberg, D.2
  • 49
    • 0036467996 scopus 로고    scopus 로고
    • Insulators: Many functions, many mechanisms
    • West AG, Gaszner M, Felsenfeld G. Insulators: Many functions, many mechanisms. Genes Dev 2002;16:271-88
    • (2002) Genes Dev , vol.16 , pp. 271-288
    • West, A.G.1    Gaszner, M.2    Felsenfeld, G.3
  • 51
    • 0034602192 scopus 로고    scopus 로고
    • A basal transcription factor that activates or represses transcription
    • Willy PJ, Kobayashi R, Kadonaga JT. A basal transcription factor that activates or represses transcription. Science 2000; 290:982-4
    • (2000) Science , vol.290 , pp. 982-984
    • Willy, P.J.1    Kobayashi, R.2    Kadonaga, J.T.3
  • 52
    • 0035883954 scopus 로고    scopus 로고
    • Transcription regulation by histone methylation: Interplay between different covalent modifications of the core histone tails
    • Zhang Y, Reinberg D. Transcription regulation by histone methylation: Interplay between different covalent modifications of the core histone tails. Genes Dev 2001;15:2343-60
    • (2001) Genes Dev , vol.15 , pp. 2343-2360
    • Zhang, Y.1    Reinberg, D.2
  • 53
    • 0035816601 scopus 로고    scopus 로고
    • II55 gene contains a functional initiator and a downstream promoter element
    • II55 gene contains a functional initiator and a downstream promoter element. J Biol Chem 2001;276:25503-11
    • (2001) J Biol Chem , vol.276 , pp. 25503-25511
    • Zhou, T.1    Chiang, C.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.