Whole-genome analysis of Dorsal-ventral patterning in the Drosophila embryo

Cell

Volumn 111, Issue 5, 2002, Pages 687-701

  Stathopoulos, Angelike ^a   Van Drenth, Madeleine ^a   Erives, Albert ^b   Markstein, Michele ^c   Levine, Michael ^a  

^a University of California Berkeley   (United States)

^b Auilix Biopharma Inc   (United States)

^c UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; PROTEIN; PROTEIN NF Y; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; CELL DIFFERENTIATION; CONTROLLED STUDY; DNA MICROARRAY; DROSOPHILA; EMBRYO; EMBRYO DEVELOPMENT; GENOME ANALYSIS; MESODERM; MORPHOGENESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION;

ANIMALIA; DROSOPHILA;

EID: 0037184519     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(02)01087-5     Document Type: Article

References (68)

1. Aoyagi N., Wassarman D.V. Genes encoding Drosophila melanogaster RNA polymerase II general transcription factors. diversity in TFIIA and TFIID components contributes to gene-specific transcriptional regulation J. Cell Biol. 150:2000;F45-F50.
2. Baud V., Karin M. Signal transduction by tumor necrosis factor and its relatives. Trends Cell Biol. 11:2001;372-377.
3. Belvin M.P., Anderson K.V. A conserved signaling pathway. the Drosophila toll-dorsal pathway Annu. Rev. Cell Dev. Biol. 12:1996;393-416.
4. Bodmer R., Jan L.Y., Jan Y.N. A new homeobox-containing gene, msh-2, is transiently expressed early during mesoderm formation of Drosophila. Development. 110:1990;661-669.
5. Brogiolo W., Stocker H., Ikeya T., Rintelen F., Fernandez R., Hafen E. An evolutionarily conserved function of the Drosophila insulin receptor and insulin-like peptides in growth control. Curr. Biol. 11:2001;213-221.
6. Casal J., Leptin M. Identification of novel genes in Drosophila reveals the complex regulation of early gene activity in the mesoderm. Proc. Natl. Acad. Sci. USA. 93:1996;10327-10332.
7. Costa M., Wilson E.T., Wieschaus E. A putative cell signal encoded by the folded gastulation gene coordinates cell shape changes during Drosophila gastrulation. Cell. 76:1994;1075-1089.
8. Courey A.J., Huang J.D. The establishment and interpretation of transcription factor gradients in the Drosophila embryo. Biochim. Biophys. Acta. 1261:1995;1-18.
9. Cremazy F., Berta P., Girard F. Sox Neuro, a new Drosophila Sox gene expressed in the developing central nervous system. Mech. Dev. 93:2000;215-219.
10. Doyle H.J., Kraut R., Levine M. Spatial regulation of zerknullt. a dorsal-ventral patterning gene in Drosophila Genes Dev. 3:1989;1518-1533.
11. Francois V., Solloway M., O'Neill J.W., Emery J., Bier E. Dorsal-ventral patterning of the Drosophila embryo depends on a putative negative growth factor encoded by the short gastrulation gene. Genes Dev. 8:1994;2602-2616.
12. Frank L.H., Rushlow C. A group of genes required for maintenance of the amnioserosa tissue in Drosophila. Development. 122:1996;1343-1352.
13. Freiman R.N., Albright S.R., Zheng S., Sha W.C., Hammer R.E., Tjian R. Requirement of tissue-selective TBP-associated factor TAFII105 in ovarian development. Science. 293:2001;2084-2087.
14. Furlong E.M., Anderson E.C., Null B., White K.P., Scott M.P. Patterns of gene expression during Drosophila mesoderm development. Science. 293:2001;1629-1633.
15. Gurdon J.B., Bourillot P.Y. Morphogen gradient interpretation. Nature. 413:2001;797-803.
16. Hacker U., Perrimon N. DRhoGEF2 encodes a member of the Dbl family of oncogenes and controls cell shape changes during gastrulation in Drosophila. Genes Dev. 12:1998;274-284.
17. Hiller M.A., Lin T.Y., Wood C., Fuller M.T. Developmental regulation of transcription by a tissue-specific TAF homolog. Genes Dev. 15:2001;1021-1030.
18. Hoch M., Schröder C., Seifert E., Jackle H. Cis-acting control elements for Krüppel expression in the Drosophila embryo. EMBO J. 8:1990;2587-2595.
19. Huang A.D., Rusch J., Levine M. An anterior-posterior Dorsal gradient in the Drosophila embryo. Genes Dev. 11:1997;1963-1973.
20. Igaki T., Kanda H., Yamamoto-Goto Y., Kanuka H., Kuranaga E., Aigaki T., Miura M. Eiger, a TNF superfamily ligand that triggers the Drosophila JNK pathway. EMBO J. 21:2002;3009-3018.
21. Ingham P.W., McMahon A.P. Hedgehog signaling in animal development. paradigms and principles Genes Dev. 15:2001;3059-3087.
22. Ip Y.T., Kraut R., Levine M., Rushlow C.A. The dorsal morphogen is a sequence-specific DNA-binding protein that interacts with a long-range repression element in Drosophila. Cell. 64:1991;439-446.
23. Ip Y.T., Park R.E., Kosman D., Yazdanbakhsh K., Levine M. dorsal-twist interactions establish snail expression in the presumptive mesoderm of the Drosophila embryo. Genes Dev. 6:1992;1518-1530. a.
24. Ip Y.T., Park R.E., Kosman D., Bier E., Levine M. The dorsal gradient morphogen regulates stripes of rhomboid expression in the presumptive neuroectoderm of the Drosophila embryo. Genes Dev. 6:1992;1728-1739. b.
25. Jazwinska A., Rushlow C., Roth S. The role of brinker in mediating the graded response to Dpp in early Drosophila embryos. Development. 126:1999;3323-3334.
26. Jessell T.M. Neuronal specification in the spinal cord. inductive signals and transcriptional codes Nat. Rev. Genet. 1:2000;20-29.
27. Jiang J., Kosman D., Ip Y.T., Levine M. The dorsal morphogen gradient regulates the mesoderm determinant twist in early Drosophila embryos. Genes Dev. 5:1991;1881-1891.
28. Kasai Y., Stahl S., Crews S. Specification of the Drosophila CNS midline cell lineage. direct control of single-minded transcription by dorsal/ventral patterning genes Gene Expr. 7:1998;171-189.
29. Kirov N., Childs S., O'Connor M., Rushlow C. The Drosophila dorsal morphogen represses the tolloid gene by interacting with a silencer element. Mol. Cell. Biol. 14:1994;713-722.
30. Kosman D., Small S. Concentration-dependent patterning by an ectopic expression domain of the Drosophila gap gene knirps. Development. 124:1997;1343-1354.
31. Kosman D., Ip Y.T., Levine M., Arora K. Establishment of the mesoderm-neuroectoderm boundary in the Drosophila embryo. Science. 254:1991;118-122.
32. Lai Z.C., Fortini M.E., Rubin G.M. The embryonic expression patterns of zfh-1 and zfh-2, two Drosophila genes encoding novel zinc-finger homeodomain proteins. Mech. Dev. 34:1991;123-134.
33. Leptin M., Roth S. Autonomy and non-autonomy in Drosophila mesoderm determination and morphogenesis. Development. 120:1994;853-859.
34. Lieber T., Kidd S., Young M.W. kuzbanian-mediated cleavage of Drosophila Notch. Genes Dev. 16:2002;209-221.
35. Mantovani R. The molecular biology of the CCAAT-binding factor NF-Y. Gene. 239:1999;15-27.
36. Markstein M., Markstein P., Markstein V., Levine M.S. Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo. Proc. Natl. Acad. Sci. USA. 99:2002;763-768.
37. Martin G. Making a vertebrate limb. new players enter from the wings Bioessays. 23:2001;865-868.
38. McDonald J.A., Holbrook S., Isshiki T., Weiss J., Doe C.Q., Mellerick D.M. Dorsoventral patterning in the Drosophila central nervous system. the vnd homeobox gene specifies ventral column identity Genes Dev. 12:1998;3603-3612.
39. Mlodzik M., Baker N.E., Rubin G.M. Isolation and expression of scabrous, a gene regulating neurogenesis in Drosophila. Genes Dev. 4:1990;1848-1861.
40. Morisato D. Spatzle regulates the shape of the Dorsal gradient in the Drosophila embryo. Development. 128:2001;2309-2319.
41. Morize P., Christiansen A.E., Costa M., Parks S., Wieschaus E. Hyperactivation of the folded gastrulation pathway induces specific cell shape changes. Development. 125:1998;589-597.
42. Natzle J.E., McCarthy B.J. Regulation of Drosophila alpha- and beta-tubulin genes during development. Dev. Biol. 104:1984;187-198.
43. Podos S.D., Ferguson E.L. Morphogen gradients. new insights from DPP Trends Genet. 15:1999;396-402.
44. Qi H., Rand M.D., Wu X., Sestan N., Wang W., Rakic P., Xu T., Artavanis-Tsakonas S. Processing of the Notch ligand Delta by the metalloprotease Kuzbanian. Science. 283:1999;91-94.
45. Riesgo-Escovar J.R., Hafen E. Common and distinct roles of Dfos and Djun during Drosophila development. Science. 278:1997;669-672.
46. Romani S., Campuzano S., Macagno E.R., Modolell J. Expression of achaete and scute genes in Drosophila imaginal discs and their function in sensory organ development. Genes Dev. 3:1987;997-1007.
47. Roth S. Axis determination. Proteolytic generation of a morphogen. Curr. Biol. 4:1994;755-757.
48. Rusch J., Levine M. Threshold responses to the dorsal regulatory gradient and the subdivision of primary tissue territories in the Drosophila embryo. Curr. Opin. Genet. Dev. 6:1996;416-423.
49. Rusch J., Levine M. Regulation of a dpp target gene in the Drosophila embryo. Development. 124:1997;303-311.
50. Schneider D.S., Hudson K.L., Lin T.Y., Anderson K.V. Dominant and recessive mutations define functional domains of Toll, a transmembrane protein required for dorsal-ventral polarity in the Drosophila embryo. Genes Dev. 5:1991;797-807.
51. Sen J., Goltz J.S., Stevens L., Stein D. Spatially restricted expression of pipe in the Drosophila egg chamber defines embryonic dorsal-ventral polarity. Cell. 95:1998;471-481.
52. Shao X., Koizumi K., Nosworthy N., Tan D.P., Odenwald W., Nirenberg M. Regulatory DNA required for vnd/NK-2 homeobox gene expression pattern in neuroblasts. Proc. Natl. Acad. Sci. USA. 99:2002;113-117.
53. Shishido E., Higashijima S., Emori Y., Saigo K. Two FGF-receptor homologues of Drosophila. one is expressed in mesodermal primordium in early embryos Development. 117:1993;751-761.
54. Small S., Blair A., Levine M. Regulation of even-skipped stripe 2 in the Drosophila embryo. EMBO J. 11:1992;4047-4057.
55. Spralding A.C., Rubin G.M. Genetic transformation of Drosophila with transposable element vectors. Science. 218:1982;348-353.
56. St. Johnston R.D., Gelbart W.M. Decapentaplegic transcripts are localized along the dorsal-ventral axis of the Drosophila embryo. EMBO J. 6:1987;2785-2791.
57. St. Johnston D., Nusslein-Volhard C. The origin of pattern and polarity in the Drosophila embryo. Cell. 68:1992;201-219.
58. Stathopoulos A., Levine M. Dorsal gradient networks in the Drosophila embryo. Dev. Biol. 246:2002;57-62. a.
59. Stathopoulos A., Levine M. Linear signaling in the Toll-Dorsal pathway of Drosophila. activated Pelle kinase specifies all threshold outputs of gene expression while the bHLH protein Twist specifies a subset Development. 129:2002;3411-3419. b.
60. Steward R. Dorsal, an embryonic polarity gene in Drosophila, is homologous to the vertebrate proto-oncogene, c-rel. Science. 238:1987;692-694.
61. Strigini M., Cohen S.M. Formation of morphogen gradients in the Drosophila wing. Semin. Cell Dev. Biol. 10:1999;335-344.
62. Szymanski P., Levine M. Multiple modes of dorsal-bHLH synergy in the Drosophila embryo. EMBO J. 14:1995;2229-2238.
63. Tatei K., Cai H., Ip Y.T., Levine M. Race. a Drosophila homologue of angiotensin converting enzyme Mech. Dev. 51:1995;157-168.
64. Tautz D., Pfeifle C. A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback. Chromosoma. 98:1989;81-85.
65. Taylor M.V., Beatty K.E., Hunter H.K., Baylies M.K. Drosophila MEF2 is regulated by twist and is expressed in both the primordia and differentiated cells of the embryonic somatic, visceral and heart musculature. Mech. Dev. 50:1995;29-41.
66. Van Buskirk C., Schupbach T. Versatility in signalling. multiple responses to EGF receptor activation during Drosophila oogenesis Trends Cell Biol. 9:1999;1-4.
67. Weiss J.B., Von Ohlen T., Mellerick D.M., Dressler G., Doe C.Q., Scott M.P. Dorsoventral patterning in the Drosophila central nervous system. the intermediate neuroblasts defective homeobox gene specifies intermediate column identity Genes Dev. 12:1998;3591-3602.
68. Winick J., Abel T., Leonard M.W., Michelson A.M., Chardon-Loriaux I., Holmgren R.A., Maniatis T., Engel J.D. A GATA family transcription factor is expressed along the embryonic dorsoventral axis in Drosophila melanogaster. Development. 119:1993;1055-1065.