-
2
-
-
0034015916
-
-
Hata, M.; Fujii, Y.; Ishii, M.; Hoshino, T.; Tsuda, M. Chem. Pharm. Bull. 2000, 48, 447-453.
-
(2000)
Chem. Pharm. Bull.
, vol.48
, pp. 447-453
-
-
Hata, M.1
Fujii, Y.2
Ishii, M.3
Hoshino, T.4
Tsuda, M.5
-
4
-
-
0025647444
-
-
Gibson, R.M.; Christensen, H.; Waley, S.G. Biochem. J. 1990, 272, 613-619.
-
(1990)
Biochem. J.
, vol.272
, pp. 613-619
-
-
Gibson, R.M.1
Christensen, H.2
Waley, S.G.3
-
6
-
-
0025998489
-
-
Hertzberg, O.; Kapadia, G.; Blanco, B.; Smith, T.S.; Coluson, A. Biochemistry 1991, 30, 9503-9509.
-
(1991)
Biochemistry
, vol.30
, pp. 9503-9509
-
-
Hertzberg, O.1
Kapadia, G.2
Blanco, B.3
Smith, T.S.4
Coluson, A.5
-
8
-
-
0025801845
-
-
Adachi, H.; Ohta, T.; Matsuzawa, H. J. Biol. Chem. 1991, 266, 3186-3191.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 3186-3191
-
-
Adachi, H.1
Ohta, T.2
Matsuzawa, H.3
-
9
-
-
0025768209
-
-
Lamotte-Brasseur, J.; Jacob-Dubuisson, F.; Dive, G.; Frère, J.-M.; Ghuysen, J.-M. Biochem. J. 1991, 279, 213-221.
-
(1991)
Biochem. J.
, vol.279
, pp. 213-221
-
-
Lamotte-Brasseur, J.1
Jacob-Dubuisson, F.2
Dive, G.3
Frère, J.-M.4
Ghuysen, J.-M.5
-
10
-
-
0026342155
-
-
Escobar, W.A.; Tan, A.K.; Fink, A.L. Biochemistry 1991, 30, 10783-10787.
-
(1991)
Biochemistry
, vol.30
, pp. 10783-10787
-
-
Escobar, W.A.1
Tan, A.K.2
Fink, A.L.3
-
11
-
-
0026801518
-
-
Strynadka, N.C.J.; Adachi, H.; Jensen, S.E.; Johns, K.; Sielecki, A.; Betzel, C.; Sutoh, K.; James, M.N.G. Nature 1992, 359, 700-705.
-
(1992)
Nature
, vol.359
, pp. 700-705
-
-
Strynadka, N.C.J.1
Adachi, H.2
Jensen, S.E.3
Johns, K.4
Sielecki, A.5
Betzel, C.6
Sutoh, K.7
James, M.N.G.8
-
12
-
-
0027461951
-
-
Knox, J.R.; Moews, P.C.; Escobar, W.A.; Fink, A.L. Protein Eng. 1993, 6, 11-18.
-
(1993)
Protein Eng.
, vol.6
, pp. 11-18
-
-
Knox, J.R.1
Moews, P.C.2
Escobar, W.A.3
Fink, A.L.4
-
13
-
-
0028237904
-
-
Escobar, W.A.; Tan, A.K.; Lewis, E.R.; Fink, A.L. Biochemistry 1994, 33, 7619-7626.
-
(1994)
Biochemistry
, vol.33
, pp. 7619-7626
-
-
Escobar, W.A.1
Tan, A.K.2
Lewis, E.R.3
Fink, A.L.4
-
14
-
-
0028181043
-
-
Leung, Y.-C.; Robinson, C.V.; Aplin, R.T.; Waley, S.G. Biochem. J. 1994, 299, 671-678.
-
(1994)
Biochem. J.
, vol.299
, pp. 671-678
-
-
Leung, Y.-C.1
Robinson, C.V.2
Aplin, R.T.3
Waley, S.G.4
-
15
-
-
0029644936
-
-
Swarén, P.; Maveyraud, L.; Guillet, V.; Masson, J.-M.; Mourey, L.; Samama, J.-P. Structure 1995, 3, 603-613.
-
(1995)
Structure
, vol.3
, pp. 603-613
-
-
Swarén, P.1
Maveyraud, L.2
Guillet, V.3
Masson, J.-M.4
Mourey, L.5
Samama, J.-P.6
-
16
-
-
0029135970
-
-
Vijayakumar, S.; Ravishanker, G.; Pratt, R.F.; Beveridge, D.L. J. Am. Chem. Soc. 1995, 117, 1722-1730.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 1722-1730
-
-
Vijayakumar, S.1
Ravishanker, G.2
Pratt, R.F.3
Beveridge, D.L.4
-
18
-
-
0030609096
-
-
Raquet, X.; Lounnas, V.; Lamotte-Brasseur, J.; Frère, J.-M.; Wade, R.C.; Biophys. J. 1997, 73, 2416-2426.
-
(1997)
Biophys. J.
, vol.73
, pp. 2416-2426
-
-
Raquet, X.1
Lounnas, V.2
Lamotte-Brasseur, J.3
Frère, J.-M.4
Wade, R.C.5
-
19
-
-
0032586776
-
-
Lamotte-Brasseur, J.; Lounnas, V.; Raquet, X.; Wade, R.C. Protein Sci. 1999, 8, 404-409.
-
(1999)
Protein Sci.
, vol.8
, pp. 404-409
-
-
Lamotte-Brasseur, J.1
Lounnas, V.2
Raquet, X.3
Wade, R.C.4
-
20
-
-
0026504625
-
-
Lamotte-Brasseur, J.; Jacob-Dubuisson, F.; Dive, G.; Frère, J.-M.; Ghuysen, J.-M. Biochem. J. 1992, 282, 189-195.
-
(1992)
Biochem. J.
, vol.282
, pp. 189-195
-
-
Lamotte-Brasseur, J.1
Jacob-Dubuisson, F.2
Dive, G.3
Frère, J.-M.4
Ghuysen, J.-M.5
-
21
-
-
0029944652
-
-
Damblon, C.; Raquet, X.; Lian, L.Y.; Lamotte-Brasseur, J.; Fonzè, E.; Charlier, P.; Roberts, G.C.K.; Frère, J.M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 1747-1752.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 1747-1752
-
-
Damblon, C.1
Raquet, X.2
Lian, L.Y.3
Lamotte-Brasseur, J.4
Fonzè, E.5
Charlier, P.6
Roberts, G.C.K.7
Frère, J.M.8
-
23
-
-
0014689979
-
-
Blow, D.M.; Birktoft, J.J.; Hartley, B.S. Nature 1969, 221, 337-340.
-
(1969)
Nature
, vol.221
, pp. 337-340
-
-
Blow, D.M.1
Birktoft, J.J.2
Hartley, B.S.3
-
25
-
-
0019881624
-
-
Umeyama, H.; Nakagawa, S.; Kudo, T. J. Mol. Biol. 1981, 150, 409-421.
-
(1981)
J. Mol. Biol.
, vol.150
, pp. 409-421
-
-
Umeyama, H.1
Nakagawa, S.2
Kudo, T.3
-
27
-
-
0017844794
-
-
Tapia, O.; Sussman, F.; Poulain, E. J. Theor. Biol. 1978, 71, 49-72.
-
(1978)
J. Theor. Biol.
, vol.71
, pp. 49-72
-
-
Tapia, O.1
Sussman, F.2
Poulain, E.3
-
28
-
-
0021822329
-
-
Longo, E.; Stamato, F.M.L.G.; Ferreira, R.; Tapia, O. J. Theor. Biol. 1985, 112, 783-798.
-
(1985)
J. Theor. Biol.
, vol.112
, pp. 783-798
-
-
Longo, E.1
Stamato, F.M.L.G.2
Ferreira, R.3
Tapia, O.4
-
30
-
-
0024538543
-
-
Warshel, A.; Naray-Szabo, G.; Sussman, F.; Hwang, J.-K. Biochemistry 1989, 28, 3629-3637.
-
(1989)
Biochemistry
, vol.28
, pp. 3629-3637
-
-
Warshel, A.1
Naray-Szabo, G.2
Sussman, F.3
Hwang, J.-K.4
-
33
-
-
0542382495
-
-
Wong, M.W.; Frisch, M.J.; Wiberg, K.B. J. Am. Chem. Soc. 1991, 113, 4776-4782.
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 4776-4782
-
-
Wong, M.W.1
Frisch, M.J.2
Wiberg, K.B.3
-
35
-
-
0001581344
-
-
Solà, M.; Lledós, A.; Duran, M.; Bertráin, J. J. Am. Chem. Soc. 1992, 114, 869-877.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 869-877
-
-
Solà, M.1
Lledós, A.2
Duran, M.3
Bertráin, J.4
-
36
-
-
0030857280
-
-
Wladkowski, B.D.; Chenoweth, S.A.; Sanders, J.N.; Krauss, M.; Stevens, W.J. J. Am. Chem. Soc. 1997, 119, 6423-6431.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 6423-6431
-
-
Wladkowski, B.D.1
Chenoweth, S.A.2
Sanders, J.N.3
Krauss, M.4
Stevens, W.J.5
-
37
-
-
84961985438
-
-
M.; Hirano, Y.; Hoshino, T.; Tsuda, M. J. Am. Chem. Soc. 2001, 123, 6410-6416.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 6410-6416
-
-
Hata, M.1
Hirano, Y.2
Hoshino, T.3
Tsuda, M.4
-
38
-
-
0033884808
-
-
Murata, K.; Fujii, Y.; Enomoto, N.; Hoshino, T.; Tsuda, M. Biophys. J. 2000, 79, 982-991.
-
(2000)
Biophys. J.
, vol.79
, pp. 982-991
-
-
Murata, K.1
Fujii, Y.2
Enomoto, N.3
Hoshino, T.4
Tsuda, M.5
-
40
-
-
0025812399
-
-
Varetto, L.; De Meester, F.; Monnaie, D.; Marchand-Brynaert, J.; Dive, G.; Jacob, F.; Frère, J.-M. Biochem. J. 1991, 278, 801-807.
-
(1991)
Biochem. J.
, vol.278
, pp. 801-807
-
-
Varetto, L.1
De Meester, F.2
Monnaie, D.3
Marchand-Brynaert, J.4
Dive, G.5
Jacob, F.6
Frère, J.-M.7
-
42
-
-
0002638513
-
Protein data bank
-
Allen, F.H., Bergerhoff, G., Sievers, R., Eds.; Data Commission of the International Union of Crystallography: Cambridge/Chester, U.K.
-
Abola, E.E.; Bernstein, F.C.; Bryant, S.H.; Koetzle, T.F.; Weng, J. Protein Data Bank. In Crystallographic Databases-Information Content, Software Systems, Scientific Applications; Allen, F.H., Bergerhoff, G., Sievers, R., Eds.; Data Commission of the International Union of Crystallography: Cambridge/Chester, U.K., 1987; pp 107-132.
-
(1987)
Crystallographic Databases-Information Content, Software Systems, Scientific Applications
, pp. 107-132
-
-
Abola, E.E.1
Bernstein, F.C.2
Bryant, S.H.3
Koetzle, T.F.4
Weng, J.5
-
43
-
-
0001424383
-
-
Abola, E.E.; Manning, N.O.; Prilusky, J.; Stampf, D.R.; Sussman, J.L. J. Res. Natl. Inst. Stand. Technol. 1996, 101, 231-241.
-
(1996)
J. Res. Natl. Inst. Stand. Technol.
, vol.101
, pp. 231-241
-
-
Abola, E.E.1
Manning, N.O.2
Prilusky, J.3
Stampf, D.R.4
Sussman, J.L.5
-
44
-
-
0011748585
-
-
University of California: San Francisco, CA
-
Pearlman, D.A.; Case, D.A.; Caldwell, J.W.; Ross, W.S.; Cheatham, T.E. III.; Ferguson, D.M.; Seibel, G.L.; Singh, U.C.; Weiner, P.K.; Kollman, P.A. AMBER4.I; University of California: San Francisco, CA, 1995.
-
(1995)
AMBER4.I
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham T.E. III5
Ferguson, D.M.6
Seibel, G.L.7
Singh, U.C.8
Weiner, P.K.9
Kollman, P.A.10
-
45
-
-
0021757436
-
-
Weiner, S.J.; Kollman, P.A.; Case, D.A.; Singh, U.C.; Ghio, C.; Alagona, G.; Profeta, S., Jr.; Weiner, P.J. J. Am. Chem. Soc. 1984, 106, 765-784.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 765-784
-
-
Weiner, S.J.1
Kollman, P.A.2
Case, D.A.3
Singh, U.C.4
Ghio, C.5
Alagona, G.6
Profeta S., Jr.7
Weiner, P.J.8
-
46
-
-
84988053694
-
-
Weiner, S.J.; Kollman, P.A.; Nguyen, D.T.; Case, D.A. J. Comput. Chem. 1986, 7, 230-252.
-
(1986)
J. Comput. Chem.
, vol.7
, pp. 230-252
-
-
Weiner, S.J.1
Kollman, P.A.2
Nguyen, D.T.3
Case, D.A.4
-
48
-
-
0004016501
-
-
Jorgensen, W.L.; Chandrasekhar, J.; Madura, J.D. J. Chem. Phys. 1983, 79, 926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
-
49
-
-
33646940952
-
-
Ryckaert, J.P.; Ciccotti, G.; Berendsen, H.J.C. J. Comput. Phys. 1977, 23, 327-341.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
50
-
-
0001700958
-
-
Toyoda, S.; Miyagawa, H.; Kitamura, K.; Amisaki, T.; Hashimoto, E.; Ikeda, H.; Kusumi, A.; Miyagawa, N. J. Comput. Chem. 1999, 20, 185-199.
-
(1999)
J. Comput. Chem.
, vol.20
, pp. 185-199
-
-
Toyoda, S.1
Miyagawa, H.2
Kitamura, K.3
Amisaki, T.4
Hashimoto, E.5
Ikeda, H.6
Kusumi, A.7
Miyagawa, N.8
-
52
-
-
0345491105
-
-
Lee, C.; Yang, W.; Parr, R.G. Phys. Rev. B 1988, 37, 785-789.
-
(1988)
Phys. Rev. B
, vol.37
, pp. 785-789
-
-
Lee, C.1
Yang, W.2
Parr, R.G.3
-
56
-
-
0028305457
-
-
Antosiewicz, J.; McCammon, J.A.; Gilson, M.K. J. Mol. Biol. 1994, 238, 415-436.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 415-436
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
57
-
-
0029665693
-
-
Antosiewicz, J.; McCammon, J.A.; Gilson, M.K. Biochemistry 1996, 35, 7819-7833.
-
(1996)
Biochemistry
, vol.35
, pp. 7819-7833
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
58
-
-
0010624785
-
-
Sham, Y.Y.; Muegge, I.; Warshel, A. Biophys. J. 1996, 74, 1744-1753.
-
(1996)
Biophys. J.
, vol.74
, pp. 1744-1753
-
-
Sham, Y.Y.1
Muegge, I.2
Warshel, A.3
-
59
-
-
0004133516
-
-
Gaussian, Inc.: Pittsburgh, PA
-
Frisch, M.J.; Trucks, G.W.; Schlegel, H.B.; Scuseria, G.E.; Robb, M.A.; Cheeseman, J.R.; Zakrzewski, V.G.; Montgomery, J.A., Jr.; Stratmann, R.E.; Burant, J.C.; Dapprich, S.; Millam, J.M.; Daniels, A.D.; Kudin, K.N.; Strain, M.C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G.A.; Ayala, P.Y.; Cui, Q.; Morokuma, K.; Malick, D.K.; Rabuck, A.D.; Raghavachari, K.; Foresman, J.B.; Cioslowski, J.; Ortiz, J.V.; Stefanov, B.B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Gomperts, R.; Martin, R.L.; Fox, D.J.; Keith, T.; Al-Laham, M.A.; Peng, C.Y.; Nanayakkara, A.; Gonzalez, C.; Challacombe, M.; Gill, P.M.W.; Johnson, B.G.; Chen, W.; Wong, M.W.; Andres, J.L.; Head-Gordon, M.; Replogle, E.S.; Pople, J.A. Gaussian 98, revision A.7; Gaussian, Inc.: Pittsburgh, PA, 1998.
-
(1998)
Gaussian 98, revision A.7
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery J.A., Jr.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Stefanov, B.B.36
Liu, G.37
Liashenko, A.38
Piskorz, P.39
Komaromi, I.40
Gomperts, R.41
Martin, R.L.42
Fox, D.J.43
Keith, T.44
Al-Laham, M.A.45
Peng, C.Y.46
Nanayakkara, A.47
Gonzalez, C.48
Challacombe, M.49
Gill, P.M.W.50
Johnson, B.G.51
Chen, W.52
Wong, M.W.53
Andres, J.L.54
Head-Gordon, M.55
Replogle, E.S.56
Pople, J.A.57
more..
-
60
-
-
0011758390
-
-
note
-
The structure of A3′ did not completely correspond to that of A3″. However, the strucutral difference between A3′ and A3 was only a conformation of carboxyl group of Glu166. Further, Glu166 did not participiate in the 3rd elementary reaction. It should be also noted that the potential energy of A3′ was almost same as that of A3 (the energy difference was only 0.3 kcal/mol). Therefore, we assumed that A3 and A3′ were indentical in the terms of reaction mechanism.
-
-
-
-
62
-
-
0035892151
-
-
Diáz, N.; Suárez, D.; Sordo, T.L.; Merz, K.-M., Jr. J. Phys. Chem. B 2001, 105, 11302-11313.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 11302-11313
-
-
Diáz, N.1
Suárez, D.2
Sordo, T.L.3
Merz K.-M., Jr.4
-
63
-
-
0030467025
-
-
Zawadzke, L.E.; Chen, C.C.H.; Banerjee, S.; Li, Z.; Wäsch, S.; Kapadia, G.; Moult, J.; Hertzberg, O. Biochemistry 1996, 35, 16475-16482.
-
(1996)
Biochemistry
, vol.35
, pp. 16475-16482
-
-
Zawadzke, L.E.1
Chen, C.C.H.2
Banerjee, S.3
Li, Z.4
Wäsch, S.5
Kapadia, G.6
Moult, J.7
Hertzberg, O.8
-
64
-
-
0019417121
-
-
Wanning, M.; Zähner, H.; Krone, B.; Zeeck, A. Tetrahedon Lett. 1981, 22, 2539-2540.
-
(1981)
Tetrahedon Lett.
, vol.22
, pp. 2539-2540
-
-
Wanning, M.1
Zähner, H.2
Krone, B.3
Zeeck, A.4
-
67
-
-
0034595379
-
-
Lietz, E.J.; Truher, H.; Kahn, D.; Hokenson, M.J.; Fink, A.L. Biochemistry 2000, 39, 4971-4981.
-
(2000)
Biochemistry
, vol.39
, pp. 4971-4981
-
-
Lietz, E.J.1
Truher, H.2
Kahn, D.3
Hokenson, M.J.4
Fink, A.L.5
-
68
-
-
0025092290
-
-
Jacob, F.; Joris, B.; Lepage, S.; Dusart, J.; Frère, J.-M. Biochem. J 1990, 271, 399-406.
-
(1990)
Biochem. J
, vol.271
, pp. 399-406
-
-
Jacob, F.1
Joris, B.2
Lepage, S.3
Dusart, J.4
Frère, J.-M.5
-
69
-
-
0026447287
-
-
Juteau, J.-M.; Billings, E.; Knox, J.R.; Levesque, R.C. Protein Eng. 1992, 5, 693-701.
-
(1992)
Protein Eng.
, vol.5
, pp. 693-701
-
-
Juteau, J.-M.1
Billings, E.2
Knox, J.R.3
Levesque, R.C.4
-
70
-
-
0029738864
-
-
Maveyraud, L.; Massova, I.; Brick, C.; Miyashita, K.; Samama, J.-P.; Mobashery, S. J. Am. Chem. Soc. 1996, 118, 7435-7440.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 7435-7440
-
-
Maveyraud, L.1
Massova, I.2
Brick, C.3
Miyashita, K.4
Samama, J.-P.5
Mobashery, S.6
-
71
-
-
0032538055
-
-
Mourey, L.; Miyashita, K.; Swarén, P.; Bulychev, A.; Samama, J.-P.; Mobashery, S. J. Am. Chem. Soc. 1998, 120, 9382-9383.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 9382-9383
-
-
Mourey, L.1
Miyashita, K.2
Swarén, P.3
Bulychev, A.4
Samama, J.-P.5
Mobashery, S.6
-
72
-
-
0032581949
-
-
Maveyraud, L.; Mourey, L.; Kotra, L.P.; Pedelacq, J.-D.; Guillet, V.; Mobashery, S.; Samama, J.-P. J. Am. Chem. Soc. 1998, 120, 9748-9752.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 9748-9752
-
-
Maveyraud, L.1
Mourey, L.2
Kotra, L.P.3
Pedelacq, J.-D.4
Guillet, V.5
Mobashery, S.6
Samama, J.-P.7
-
73
-
-
2642607033
-
-
Pitarch, J.; Ruiz-López, M.F.; Silla, E.; Pascual-Ahuir, J.-L.; Tuñón, I. J. Am. Chem. Soc. 1998, 120, 2146-2155.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 2146-2155
-
-
Pitarch, J.1
Ruiz-López, M.F.2
Silla, E.3
Pascual-Ahuir, J.-L.4
Tuñón, I.5
|