-
1
-
-
0025870126
-
A standard numbering scheme for the class A beta-latamases
-
Ambler, R. P., A. F. Coulson, J. M. Frère, J. M. Ghuysen, B. Jaurin, B. Joris, R. Levesque, G. Tiraby, and S. G. Waley. 1991. A standard numbering scheme for the class A beta-latamases. Biochem. J. 276:269-272.
-
(1991)
Biochem. J.
, vol.276
, pp. 269-272
-
-
Ambler, R.P.1
Coulson, A.F.2
Frère, J.M.3
Ghuysen, J.M.4
Jaurin, B.5
Joris, B.6
Levesque, R.7
Tiraby, G.8
Waley, S.G.9
-
2
-
-
0028305457
-
Prediction of pH dependent properties of proteins
-
Antosiewicz, J., J. A. McCammon, and M. K. Gilson. 1994. Prediction of pH dependent properties of proteins. J. Mol. Biol. 238:415-436.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 415-436
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
4
-
-
0024788820
-
The nature of protein dipole moments: Experimental and calculated permanent dipole of chymotrypsin
-
Antosiewicz, J., and D. Porscke. 1989. The nature of protein dipole moments: experimental and calculated permanent dipole of chymotrypsin. Biochemistry. 28:10072-10078.
-
(1989)
Biochemistry
, vol.28
, pp. 10072-10078
-
-
Antosiewicz, J.1
Porscke, D.2
-
5
-
-
0025197061
-
as of ionizable groups in proteins: Atomic detail from a continuum electrostatic model
-
as of ionizable groups in proteins: atomic detail from a continuum electrostatic model. Biochemistry. 29: 5752-5761.
-
(1990)
Biochemistry
, vol.29
, pp. 5752-5761
-
-
Bashford, D.1
Karplus, M.2
-
6
-
-
33748400070
-
Including side chain flexibility in continuum electrostatic calculations of protein titration
-
Beroza, P., and D. A. Case. 1996. Including side chain flexibility in continuum electrostatic calculations of protein titration. J. Phys. Chem. 100:20156-20163.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 20156-20163
-
-
Beroza, P.1
Case, D.A.2
-
7
-
-
0026095641
-
Protonation of interacting residues in a protein by a Monte Carlo method: Application to lysozyme and the photosynthetic reaction center of Rhodobacter spharoides
-
Beroza, P., D. R. Fredkin, M. Y. Okamura, and G. Feher. 1991. Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and the photosynthetic reaction center of Rhodobacter spharoides. Proc. Natl. Acad. Sci. USA. 88:5804-5808.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 5804-5808
-
-
Beroza, P.1
Fredkin, D.R.2
Okamura, M.Y.3
Feher, G.4
-
8
-
-
0025832150
-
The mutation Lys234His yields a class A β-lactamase with a novel pH-dependence
-
Brannigan, J., A. Matagne, F. Jacob, C. Damblon, B. Joris, D. Klein, B. G. Spratt, and J. M. Frère. 1991. The mutation Lys234His yields a class A β-lactamase with a novel pH-dependence. Biochem. J. 278:673-678.
-
(1991)
Biochem. J.
, vol.278
, pp. 673-678
-
-
Brannigan, J.1
Matagne, A.2
Jacob, F.3
Damblon, C.4
Joris, B.5
Klein, D.6
Spratt, B.G.7
Frère, J.M.8
-
9
-
-
84986512474
-
CHARMm: A program for macromolecular energy minimization and dynamics calculations
-
Brooks, B. R., R. F., Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus, 1982. CHARMm: a program for macromolecular energy minimization and dynamics calculations. J. Computat. Chem. 4:187-217.
-
(1982)
J. Computat. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.F.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
10
-
-
0029944652
-
The catalytic mechanism of β-lactamases: NMR titration of an active-site lysine residue of the TEM-1 enzyme
-
Damblon, C., X. Raquet, L-Y. Lian, J. Lamotte-Brasseur, E. Fonzé, P. Charlier. G. C. K. Roberts, and J. M. Frère. 1996. The catalytic mechanism of β-lactamases: NMR titration of an active-site lysine residue of the TEM-1 enzyme. Proc. Natl. Acad. Sci. USA. 93:1747-1752.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 1747-1752
-
-
Damblon, C.1
Raquet, X.2
Lian, L.-Y.3
Lamotte-Brasseur, J.4
Fonzé, E.5
Charlier, P.6
Roberts, G.C.K.7
Frère, J.M.8
-
11
-
-
84988141840
-
Solving the finite difference linearized Poisson-Boltzmann equation: A comparison of relaxation and conjugate gradient methods
-
Davis, M. E., and J. A. McCammon. 1989. Solving the finite difference linearized Poisson-Boltzmann equation: a comparison of relaxation and conjugate gradient methods. J. Computat. Chem. 10:386-391.
-
(1989)
J. Computat. Chem.
, vol.10
, pp. 386-391
-
-
Davis, M.E.1
McCammon, J.A.2
-
12
-
-
84986522972
-
Dielectric boundary smoothing in finite difference solutions of the Poisson equation: An approach to improve accuracy and convergence
-
Davis, M. E., and J. A. McCammon. 1991. Dielectric boundary smoothing in finite difference solutions of the Poisson equation: an approach to improve accuracy and convergence. J. Computat. Chem. 12:909-912.
-
(1991)
J. Computat. Chem.
, vol.12
, pp. 909-912
-
-
Davis, M.E.1
McCammon, J.A.2
-
13
-
-
33748593093
-
as of ionizable groups in proteins
-
as of ionizable groups in proteins. J. Phys. Chem. 100:17373-17387.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 17373-17387
-
-
Demchuk, E.1
Wade, R.C.2
-
14
-
-
0028870390
-
TEM-1 beta-lactamase structure solved by molecular replacement and refined structure of the S235A mutant
-
Fonzé, E., P. Charlier, Y. To'th, M. Vermeire, X. Raquet, A. Dubus, and J. M. Frère. 1995. TEM-1 beta-lactamase structure solved by molecular replacement and refined structure of the S235A mutant. Acta Crystallogr. D51:682-694.
-
(1995)
Acta Crystallogr.
, vol.D51
, pp. 682-694
-
-
Fonzé, E.1
Charlier, P.2
To'th, Y.3
Vermeire, M.4
Raquet, X.5
Dubus, A.6
Frère, J.M.7
-
15
-
-
0029019031
-
Beta-lactamases and bacterial resistance to antibiotics
-
Frère, J-M. 1995. Beta-lactamases and bacterial resistance to antibiotics. Mol. Microbiol. 16:385-395.
-
(1995)
Mol. Microbiol.
, vol.16
, pp. 385-395
-
-
Frère, J.-M.1
-
16
-
-
0027477251
-
Multiple-site titration and molecular modeling: Two rapid methods for computing energies and forces for ionizable groups in proteins
-
Gilson, M. K. 1993. Multiple-site titration and molecular modeling: two rapid methods for computing energies and forces for ionizable groups in proteins. Proteins. 15:266-282.
-
(1993)
Proteins
, vol.15
, pp. 266-282
-
-
Gilson, M.K.1
-
17
-
-
0031041590
-
Site-directed mutagenesis of glutamate 166 in two b-lactamases. Kinetic and molecular modeling studies
-
Guillaume, G., M. Vanhove, J. Lamotte-Brasseur, P. Ledent, M. Jamin, B. Joris, and J-M. Frère. 1997. Site-directed mutagenesis of glutamate 166 in two b-lactamases. Kinetic and molecular modeling studies. J. Biol. Chem. 272:5438-5444.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 5438-5444
-
-
Guillaume, G.1
Vanhove, M.2
Lamotte-Brasseur, J.3
Ledent, P.4
Jamin, M.5
Joris, B.6
Frère, J.-M.7
-
18
-
-
0025998489
-
Structural basis for the inactivation of the P54 mutant β-lactamase from Staphylococcus aureus PC1
-
Herzberg, O., G. Kapadia, B. Blanco, T. S. Smith, and A. Coulson. 1991. Structural basis for the inactivation of the P54 mutant β-lactamase from Staphylococcus aureus PC1. Biochemistry. 30:9503-9509.
-
(1991)
Biochemistry
, vol.30
, pp. 9503-9509
-
-
Herzberg, O.1
Kapadia, G.2
Blanco, B.3
Smith, T.S.4
Coulson, A.5
-
19
-
-
84944815380
-
Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid body/TLS method
-
Howlin, B., D. S. Moss, and G. W. Harris. 1989. Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid body/TLS method. Acta Crystallogr. 45(Sect. A):851-861.
-
(1989)
Acta Crystallogr.
, vol.45
, Issue.SECT. A
, pp. 851-861
-
-
Howlin, B.1
Moss, D.S.2
Harris, G.W.3
-
20
-
-
0029896566
-
Modeling study on a hydrolytic mechanism of class A β-lactamases
-
Ishiguro, M., and S. Imajo. 1996. Modeling study on a hydrolytic mechanism of class A β-lactamases. J. Med. Chem. 39:2207-2218.
-
(1996)
J. Med. Chem.
, vol.39
, pp. 2207-2218
-
-
Ishiguro, M.1
Imajo, S.2
-
22
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
23
-
-
33645941402
-
The OPLS potential functions for proteins. Energy minimization for crystals of cyclic peptides and crambin
-
Jorgensen, W. L., and J. Tirado-Rives. 1988. The OPLS potential functions for proteins. Energy minimization for crystals of cyclic peptides and crambin. J. Am. Chem. Soc. 110:1657-1666.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
24
-
-
0023976519
-
The active site serine penicillin recognizing enzymes as members of the Streptomyces R61 DD-peptidase family
-
Joris, B., J.-M. Ghuysen, G. Dive, A. Renard, O. Dideberg, P. Charlier, J.-M. Frère, J. A. Kelly, J. C. Boyington, P. C. Moews, and J. R. Knox. 1988. The active site serine penicillin recognizing enzymes as members of the Streptomyces R61 DD-peptidase family. Biochem. J. 250: 313-324.
-
(1988)
Biochem. J.
, vol.250
, pp. 313-324
-
-
Joris, B.1
Ghuysen, J.-M.2
Dive, G.3
Renard, A.4
Dideberg, O.5
Charlier, P.6
Frère, J.-M.7
Kelly, J.A.8
Boyington, J.C.9
Moews, P.C.10
Knox, J.R.11
-
25
-
-
0027461951
-
A catalytically impaired class A β-lactamase: 2 Å crystal structure and kinetics of the Bacillus licheniformis E166A mutant
-
Knox, J. R., P. C. Moews, W. A. Escobar, and A. L. Fink. 1993. A catalytically impaired class A β-lactamase: 2 Å crystal structure and kinetics of the Bacillus licheniformis E166A mutant. Protein Eng. 6: 11-18.
-
(1993)
Protein Eng.
, vol.6
, pp. 11-18
-
-
Knox, J.R.1
Moews, P.C.2
Escobar, W.A.3
Fink, A.L.4
-
26
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. J. 1991. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24:946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
27
-
-
0025768209
-
Mechanism of acyl transfer by the class A serine β-lactamase of Streptomyces albus G
-
Lamotte-Brasseur, J., C. Dive, O. Dideberg, P. Charlier, J. M. Frère, and J. M. Ghuysen. 1991. Mechanism of acyl transfer by the class A serine β-lactamase of Streptomyces albus G. Biochem. J. 279:213-221.
-
(1991)
Biochem. J.
, vol.279
, pp. 213-221
-
-
Lamotte-Brasseur, J.1
Dive, C.2
Dideberg, O.3
Charlier, P.4
Frère, J.M.5
Ghuysen, J.M.6
-
28
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B., and F. M. Richards. 1971. The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55:379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
29
-
-
0029633152
-
Electrostatics and diffusion of molecules in solution: Simulations with the University of Houston Brownian dynamics program
-
Madura, J. D., J. M. Briggs, R. C. Wade, M. E. Davis, B. A. Luty, A. Ilin, J. Antosiewicz, M. K. Gilson, B. Bagheri, L. R. Scott, and J. A. McCammon. 1995. Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian dynamics program. Comp. Phys. Comm. 91:57-9.5.
-
(1995)
Comp. Phys. Comm.
, vol.91
, pp. 57-95
-
-
Madura, J.D.1
Briggs, J.M.2
Wade, R.C.3
Davis, M.E.4
Luty, B.A.5
Ilin, A.6
Antosiewicz, J.7
Gilson, M.K.8
Bagheri, B.9
Scott, L.R.10
McCammon, J.A.11
-
30
-
-
84977303841
-
The geometry of the reactive site and the peptide groups in trypsin, trypsinogen and its complexes with inhibitors
-
Marquart, M., J. Walter, J. Deisenhofer, W. Bode, and R. Huber. 1983. The geometry of the reactive site and the peptide groups in trypsin, trypsinogen and its complexes with inhibitors. Acta Crystallogr. 39(Sect. B): 480-490.
-
(1983)
Acta Crystallogr.
, vol.39
, Issue.SECT. B
, pp. 480-490
-
-
Marquart, M.1
Walter, J.2
Deisenhofer, J.3
Bode, W.4
Huber, R.5
-
31
-
-
0028802117
-
Contribution of mutant analysis to the understanding of enzyme catalysis: The case of class A β-lactamases
-
Matagne, A., and J. M. Frère. 1995. Contribution of mutant analysis to the understanding of enzyme catalysis: the case of class A β-lactamases. Biochim. Biophys. Acta. 1246:109-127.
-
(1995)
Biochim. Biophys. Acta.
, vol.1246
, pp. 109-127
-
-
Matagne, A.1
Frère, J.M.2
-
32
-
-
0025271184
-
β-Lactamase of Bacilus licheniformis 749/C al 2 Å resolution
-
Moews, P. C., J. R. Knox, O. Dideberg, P. Charlier, and J. M. Frère. 1990. β-Lactamase of Bacilus licheniformis 749/C al 2 Å resolution. Protein Struct. Funct. Genet. 7:156-171.
-
(1990)
Protein Struct. Funct. Genet.
, vol.7
, pp. 156-171
-
-
Moews, P.C.1
Knox, J.R.2
Dideberg, O.3
Charlier, P.4
Frère, J.M.5
-
33
-
-
0000400122
-
Structure of triosephosphate isomerase from Escherichia coli determined at 2.6 Å resolution
-
Noble, M. E., J. Ph. Zeclen, R. K. Wierenga, V. Mainfroid, K. Goraj, A. C. Gohimont, and J. A. Martial. 1993. Structure of triosephosphate isomerase from Escherichia coli determined at 2.6 Å resolution. Acta Crystallogr. D49:403-417.
-
(1993)
Acta Crystallogr
, vol.D49
, pp. 403-417
-
-
Noble, M.E.1
Zeclen, J.Ph.2
Wierenga, R.K.3
Mainfroid, V.4
Goraj, K.5
Gohimont, A.C.6
Martial, J.A.7
-
34
-
-
0023645035
-
High-resolution crystal structure of cytochrome P450cam
-
Poulos, T. L., B. C. Finzel, and A. J. Howard. 1987. High-resolution crystal structure of cytochrome P450cam. J. Mol. Biol. 195:687-700.
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 687-700
-
-
Poulos, T.L.1
Finzel, B.C.2
Howard, A.J.3
-
35
-
-
84912964993
-
Structure of triclinic lysozyme and its Cu(2 +) complex at 2 Angstroms resolution
-
Ramanadham, M., L. C. Sieker, and L. H. Jensen. 1990. Structure of triclinic lysozyme and its Cu(2 +) complex at 2 Angstroms resolution. Acta Crystallogr. 46(Sect B):63-69.
-
(1990)
Acta Crystallogr.
, vol.46
, Issue.SECT B
, pp. 63-69
-
-
Ramanadham, M.1
Sieker, L.C.2
Jensen, L.H.3
-
36
-
-
0028980507
-
Stability of TEM β-lactamases mutants hydrolysing third generation cephalosporins
-
Raquet, X., M. Vanhove, J. Lamotte-Brasseur, S. Goussard, P. Courvalin, and J. M. Frere. 1995. Stability of TEM β-lactamases mutants hydrolysing third generation cephalosporins. Proteins. 23:63-72.
-
(1995)
Proteins
, vol.23
, pp. 63-72
-
-
Raquet, X.1
Vanhove, M.2
Lamotte-Brasseur, J.3
Goussard, S.4
Courvalin, P.5
Frere, J.M.6
-
37
-
-
0029833446
-
Charge screening and the dielectric constant of proteins: Insights from molecular dynamics
-
Simonson, T., and C. L. Brooks, III. 1996. Charge screening and the dielectric constant of proteins: insights from molecular dynamics. J. Am. Chem. Soc. 118:8452-8458.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 8452-8458
-
-
Simonson, T.1
Brooks III, C.L.2
-
38
-
-
0026801518
-
Molecular structure of the acyl-enzyme intermediate in β-lactam hydrolysis at 1.7 Å resolution
-
Strynadka, N. C. J., H. Adachi, S. E. Jensen, K. Johns, A. Sielecki, C. Betzel, K. Sutoh, and M. N. J. James. 1992. Molecular structure of the acyl-enzyme intermediate in β-lactam hydrolysis at 1.7 Å resolution. Nature. 359:700-705.
-
(1992)
Nature
, vol.359
, pp. 700-705
-
-
Strynadka, N.C.J.1
Adachi, H.2
Jensen, S.E.3
Johns, K.4
Sielecki, A.5
Betzel, C.6
Sutoh, K.7
James, M.N.J.8
-
39
-
-
0029644936
-
Electrostatic analysis of TEM-1 β-lactamase: Effect of substrate binding, steep potential gradients and consequences of site-directed mutations
-
Swarén, P., L. Maveyraud, V. Guillet, J. M. Masson, L. Mourey, and J. P. Samama. 1995. Electrostatic analysis of TEM-1 β-lactamase: effect of substrate binding, steep potential gradients and consequences of site-directed mutations. Structure. 3:603-613.
-
(1995)
Structure
, vol.3
, pp. 603-613
-
-
Swarén, P.1
Maveyraud, L.2
Guillet, V.3
Masson, J.M.4
Mourey, L.5
Samama, J.P.6
-
40
-
-
0029135970
-
Mechanism of acyl transfer by the class A serine β-lactamase of Streptomyces albus G
-
Vijayakumar, S., G. Ravishanker, R. F. Pratt, and D. L. Beveridge. 1995. Mechanism of acyl transfer by the class A serine β-lactamase of Streptomyces albus G. J. Am. Chem. Soc. 117:1722-1730.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 1722-1730
-
-
Vijayakumar, S.1
Ravishanker, G.2
Pratt, R.F.3
Beveridge, D.L.4
-
41
-
-
0001817705
-
β-Lactamases. Mechanism of action
-
Chapman and Hall, Glasgow
-
Waley, S. G. 1992. β-Lactamases. Mechanism of action. In Chemistry of β-Lactams. Chapman and Hall, Glasgow, 198-228.
-
(1992)
Chemistry of Β-Lactams
, pp. 198-228
-
-
Waley, S.G.1
-
42
-
-
0025785056
-
Refined 1.83 Å structure of trypanosomal triosephosphate isomerase crystallized in the presence of 2.4 M ammonium sulphate. A comparison with the structure of the trypanosomal triosephosphate isomerase- Glycerol-3-phosphate complex
-
Wierenga, R. K., M. E. Noble, G. Vriend, S. Nauche, and W. G. Hol. 1991. Refined 1.83 Å structure of trypanosomal triosephosphate isomerase crystallized in the presence of 2.4 M ammonium sulphate. A comparison with the structure of the trypanosomal triosephosphate isomerase- glycerol-3-phosphate complex. J. Mol. Biol. 220:995-1015.
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 995-1015
-
-
Wierenga, R.K.1
Noble, M.E.2
Vriend, G.3
Nauche, S.4
Hol, W.G.5
-
44
-
-
0028859420
-
Conformation and hydrogen ion titration of proteins: A continuum electrostatic model with conformational flexibility
-
You, T. J., and D. Bashford. 1995. Conformation and hydrogen ion titration of proteins: a continuum electrostatic model with conformational flexibility. Biophys. J. 69:1721-1733.
-
(1995)
Biophys. J.
, vol.69
, pp. 1721-1733
-
-
You, T.J.1
Bashford, D.2
|