SCOPUS 정보 검색 플랫폼

Proceedings of the National Academy of Sciences of the United States of America

Volumn 99, Issue 25, 2002, Pages 16064-16068

Probing the folding free energy landscape of the src-SH3 protein domain

(3) Shea, Joan Emma a Onuchic, José N b Brooks III, Charles L c

a UNIVERSITY OF CALIFORNIA (United States)

b UNIVERSITY OF CALIFORNIA (United States)

c SCRIPPS RESEARCH INSTITUTE (United States)

Author keywords

Folding mechanism; Frustration; Protein folding; Topology

Indexed keywords

ARTICLE; ENERGY; HYDROPHOBICITY; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SRC HOMOLOGY DOMAIN; STRUCTURE ANALYSIS; THERMODYNAMICS; WATER TRANSPORT;

ANIMALS; CHICKENS; ENERGY TRANSFER; HYDROPHOBICITY; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTO-ONCOGENE PROTEINS PP60(C-SRC); SRC HOMOLOGY DOMAINS; TEMPERATURE; WATER;

EID: 0037058992 PISSN: 00278424 EISSN: None Source Type: Journal
DOI: 10.1073/pnas.242293099 Document Type: Article

Times cited : (136)

References (58)

1
- 0030628825
- Onuchic, J. N., Luthey-Schulten, Z. & Wolynes, P. G. (1997) Annu. Rev. Phys. Chem. 48, 545-600.
- (1997) Annu. Rev. Phys. Chem. , vol.48 , pp. 545-600
- Onuchic, J.N.¹ Luthey-Schulten, Z.² Wolynes, P.G.³

2
- 0026320866
- Frauenfelder, H., Sligar, S. G. & Wolynes, P. G. (1991) Science 254, 1598-1603.
- (1991) Science , vol.254 , pp. 1598-1603
- Frauenfelder, H.¹ Sligar, S.G.² Wolynes, P.G.³

3
- 0033098174
- Frauenfelder, H., Wolynes, P. G. & Austin, R. H. (1999) Rev. Mod. Phys. 71, S419-S430.
- (1999) Rev. Mod. Phys. , vol.71
- Frauenfelder, H.¹ Wolynes, P.G.² Austin, R.H.³

4
- 0032993447
- Dill, K. A. (1999) Protein Sci. 8, 1166-1180.
- (1999) Protein Sci. , vol.8 , pp. 1166-1180
- Dill, K.A.¹

5
- 0026723063
- Leopold, P. E., Montal, M. & Onuchic, J. N. (1992) Proc. Natl. Acad. Sci. USA 89, 8721-8725.
- (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 8721-8725
- Leopold, P.E.¹ Montal, M.² Onuchic, J.N.³

6
- 0028947257
- Bryngelson, J. D., Onuchic, J. N. & Wolynes, P. G. (1995) Proteins Struct. Funct. Genet. 21, 167-195.
- (1995) Proteins Struct. Funct. Genet. , vol.21 , pp. 167-195
- Bryngelson, J.D.¹ Onuchic, J.N.² Wolynes, P.G.³

7
- 0037094108
- Lyobovitsky, J. G., Gray, H. B. & Winkler, J. R. (2002) J. Am. Chem. Soc. 124, 5481-5485.
- (2002) J. Am. Chem. Soc. , vol.124 , pp. 5481-5485
- Lyobovitsky, J.G.¹ Gray, H.B.² Winkler, J.R.³

8
- 0001977662
- Onuchic, J. N., Nymeyer, H., Garcia, A. E., Chahine, J. & Socci, N. D. (2000) Adv. Protein Chem. 53, 88-152.
- (2000) Adv. Protein Chem. , vol.53 , pp. 88-152
- Onuchic, J.N.¹ Nymeyer, H.² Garcia, A.E.³ Chahine, J.⁴ Socci, N.D.⁵

9
- 0037133165
- Liwo, A., Arlukowicz, P., Czaplewski, C., Oldziej, S., Pillardy, J. & Scheraga, H. A. (2002) Proc. Natl. Acad. Sci. USA 99, 1937-1942.
- (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 1937-1942
- Liwo, A.¹ Arlukowicz, P.² Czaplewski, C.³ Oldziej, S.⁴ Pillardy, J.⁵ Scheraga, H.A.⁶

10
- 0033607208
- Shea, J.-E., Onuchic, J. N. & Brooks, C. L., III (1999) Proc. Natl. Acad. Sci. USA 96, 12512-12517.
- (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 12512-12517
- Shea, J.-E.¹ Onuchic, J.N.² Brooks C.L. III³

11
- 0034681133
- Nymeyer, H., Socci, N. D. & Onuchic, J. N. (2000) Proc. Natl. Acad. Sci. USA 97, 634-639.
- (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 634-639
- Nymeyer, H.¹ Socci, N.D.² Onuchic, J.N.³

12
- 0031059496
- Shakhnovich, E. I. (1997) Curr. Opin. Struct. Biol. 7, 29-40.
- (1997) Curr. Opin. Struct. Biol. , vol.7 , pp. 29-40
- Shakhnovich, E.I.¹

13
- 0012061124
- Guo, Z. & Thirumalai, D. (1995) Biopolymers 36, 745-757.
- (1995) Biopolymers , vol.36 , pp. 745-757
- Guo, Z.¹ Thirumalai, D.²

14
- 0030928753
- Berry, R. S., Elmaci, N., Rose, J. P. & Vekhter, B. (1997) Proc. Natl. Acad. Sci. USA 94, 9520-9524.
- (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9520-9524
- Berry, R.S.¹ Elmaci, N.² Rose, J.P.³ Vekhter, B.⁴

15
- 0018589605
- Nemethy, G. & Scheraga, H. A. (1979) Proc. Natl. Acad. Sci. USA 76, 6050-6054.
- (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 6050-6054
- Nemethy, G.¹ Scheraga, H.A.²

16
- 0017468781
- Tanaka, S. & Scheraga, H. A. (1976) Macromolecules 10, 305-316.
- (1976) Macromolecules , vol.10 , pp. 305-316
- Tanaka, S.¹ Scheraga, H.A.²

17
- 0012026149
- Shea, J.-E., Onuchic, J. N. & Brooks, C. L., III (2000) J. Chem. Phys. 113, 1-9.
- (2000) J. Chem. Phys. , vol.113 , pp. 1-9
- Shea, J.-E.¹ Onuchic, J.N.² Brooks C.L. III³

18
- 0034612228
- Plotkin, S. S. & Onuchic, J. N. (2000) Proc. Natl. Acad. Sci. USA 97, 6509-6514.
- (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6509-6514
- Plotkin, S.S.¹ Onuchic, J.N.²

19
- 0034685604
- Clementi, C., Nymeyer, H. & Onuchic, J. N. (2000) J. Mol. Biol. 298, 937-953.
- (2000) J. Mol. Biol. , vol.298 , pp. 937-953
- Clementi, C.¹ Nymeyer, H.² Onuchic, J.N.³

20
- 0033117763
- Alm, E. & Baker, D. (1999) Curr. Opin. Struct. Biol. 9, 189-196.
- (1999) Curr. Opin. Struct. Biol. , vol.9 , pp. 189-196
- Alm, E.¹ Baker, D.²

21
- 0032502839
- Piaxco, K. W., Simons, K. T. & Baker, D. (1998) J. Mol. Biol. 277, 985-994.
- (1998) J. Mol. Biol. , vol.277 , pp. 985-994
- Piaxco, K.W.¹ Simons, K.T.² Baker, D.³

22
- 0345411345
- Tsai, J., Levitt, M. & Baker, D. (1999) J. Mol. Biol. 291, 215-225.
- (1999) J. Mol. Biol. , vol.291 , pp. 215-225
- Tsai, J.¹ Levitt, M.² Baker, D.³

23
- 0032734515
- Riddle, D. S., Grantcharova, V. P., Santiago, J. V., Alm, E., Ruczinski, I. & Baker, D. (1999) Nat. Struct. Biol. 6, 1016-1024.
- (1999) Nat. Struct. Biol. , vol.6 , pp. 1016-1024
- Riddle, D.S.¹ Grantcharova, V.P.² Santiago, J.V.³ Alm, E.⁴ Ruczinski, I.⁵ Baker, D.⁶

24
- 0035946940
- Gsponer, J. & Caflisch, A. (2001) J. Mol. Biol. 309, 285-298.
- (2001) J. Mol. Biol. , vol.309 , pp. 285-298
- Gsponer, J.¹ Caflisch, A.²

25
- 0036829967
- Lindberg, M., Tangrot, J. & Oliveberg, M. (2002) Nat. Struct. Biol. 9, 818-822.
- (2002) Nat. Struct. Biol. , vol.9 , pp. 818-822
- Lindberg, M.¹ Tangrot, J.² Oliveberg, M.³

26
- 0032843763
- Liam, B., Moran, J., Schneider, P., Kentsis, A., Reddy, G. A. & Sosnick, T. R. (1999) Proc. Natl. Acad. Sci. USA 96, 10699-10704.
- (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 10699-10704
- Liam, B.¹ Moran, J.² Schneider, P.³ Kentsis, A.⁴ Reddy, G.A.⁵ Sosnick, T.R.⁶

27
- 0036295960
- Klimov, D. & Thirumalai, D. (2002) J. Mol. Biol. 315, 721-737.
- (2002) J. Mol. Biol. , vol.315 , pp. 721-737
- Klimov, D.¹ Thirumalai, D.²

28
- 0026511656
- Fersht, A. R., Matouscheck, A. & Serrano, L. (1992) J. Mol. Biol. 5, 771-782.
- (1992) J. Mol. Biol. , vol.5 , pp. 771-782
- Fersht, A.R.¹ Matouscheck, A.² Serrano, L.³

29
- 0012059278
- Go, N. (1983) Annu. Rev. Biochem. Biophys. 12.
- (1983) Annu. Rev. Biochem. Biophys. , vol.12
- Go, N.¹

30
- 0033871567
- McCallister, E. L., Alm, E. & Baker, D. (2000) Nat. Struct. Biol. 7, 669-673.
- (2000) Nat. Struct. Biol. , vol.7 , pp. 669-673
- McCallister, E.L.¹ Alm, E.² Baker, D.³

31
- 0034671177
- Guerois, R. & Serrano, L. (2000) J. Mol. Biol. 304, 967-982.
- (2000) J. Mol. Biol. , vol.304 , pp. 967-982
- Guerois, R.¹ Serrano, L.²

32
- 0035850732
- Koga, N. & Takada, S. (2001) J. Mol. Biol. 313, 171-180.
- (2001) J. Mol. Biol. , vol.313 , pp. 171-180
- Koga, N.¹ Takada, S.²

33
- 0033613131
- Galzitskaya, O. V. & Finkelstein, A. V. (1999) Proc. Natl. Acad. Sci. USA 96, 11299-11304.
- (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 11299-11304
- Galzitskaya, O.V.¹ Finkelstein, A.V.²

34
- 0036785556
- Karanicolas, J. & Brooks, C. L., III (2002) Protein Sci. 11, 2351-2361.
- (2002) Protein Sci. , vol.11 , pp. 2351-2361
- Karanicolas, J.¹ Brooks C.L. III²

35
- 0033592876
- Ternstrom, T., Mayor, U., Akke, M. & Oliveberg, M. (1999) Proc. Natl. Acad. Sci. USA 96, 14854-14859.
- (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 14854-14859
- Ternstrom, T.¹ Mayor, U.² Akke, M.³ Oliveberg, M.⁴

36
- 0032515105
- Villegas,V., Martinez, J. C., Aviles, F. X. & Serrano, L. (1998) J. Mol. Biol. 283, 1027-1036.
- (1998) J. Mol. Biol. , vol.283 , pp. 1027-1036
- Villegas, V.¹ Martinez, J.C.² Aviles, F.X.³ Serrano, L.⁴

37
- 0031444104
- Grantcharova, V. P. & Baker, D. (1997) Biochemistry 36, 15685-15692.
- (1997) Biochemistry , vol.36 , pp. 15685-15692
- Grantcharova, V.P.¹ Baker, D.²

38
- 0031853167
- Grantcharova, V. P., Riddle, D. S., Santiago, J. V. & Baker, D. (1998) Nat. Struct. Biol. 5, 714-720.
- (1998) Nat. Struct. Biol. , vol.5 , pp. 714-720
- Grantcharova, V.P.¹ Riddle, D.S.² Santiago, J.V.³ Baker, D.⁴

39
- 0032750509
- Martinez, J. C. & Serrano, L. (1999) Nat. Struct. Biol. 6, 1010-1016.
- (1999) Nat. Struct. Biol. , vol.6 , pp. 1010-1016
- Martinez, J.C.¹ Serrano, L.²

40
- 0028331876
- Viguera, A. R., Martinez, J. C., Filimonov, V. V., Malco, P. L. & Serrano, L. (1994) Biochemistry 33, 2142-2150.
- (1994) Biochemistry , vol.33 , pp. 2142-2150
- Viguera, A.R.¹ Martinez, J.C.² Filimonov, V.V.³ Malco, P.L.⁴ Serrano, L.⁵

41
- 0029151245
- Boczko, E. M. & Brooks, C. L., III (1995) Science 269, 393-396.
- (1995) Science , vol.269 , pp. 393-396
- Boczko, E.M.¹ Brooks C.L. III²

42
- 0034743155
- Shea, J.-E. & Brooks, C. L., III (2001) Annu. Rev. Phys. Chem. 52, 499-534.
- (2001) Annu. Rev. Phys. Chem. , vol.52 , pp. 499-534
- Shea, J.-E.¹ Brooks C.L. III²

43
- 85176640728
- Li, A. & Daggett, V. (1994) Proc. Natl. Acad. Sci. USA 9, 10430-10434.
- (1994) Proc. Natl. Acad. Sci. USA , vol.9 , pp. 10430-10434
- Li, A.¹ Daggett, V.²

44
- 0031465967
- Lazaridis, T. & Karplus, M. (1997) Science 278, 1928-1931.
- (1997) Science , vol.278 , pp. 1928-1931
- Lazaridis, T.¹ Karplus, M.²

45
- 0037154268
- Cheung, M. S., Garcia, A. E. & Onuchic, J. N. (2002) Proc. Natl. Acad. Sci. USA 99, 685-690.
- (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 685-690
- Cheung, M.S.¹ Garcia, A.E.² Onuchic, J.N.³

46
- 0012024844
- Brooks, B. R. Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, D. J. & Karplus, M. (1982) J. Comp. Chem. 4, 180-217.
- (1982) J. Comp. Chem. , vol.4 , pp. 180-217
- Brooks, B.R.¹ Bruccoleri, R.E.² Olafson, B.D.³ States, D.J.⁴ Swaminathan, D.J.⁵ Karplus, M.⁶

47
- 0000036869
- Neria, E., Fischer, S. & Karplus, M. (1996) J. Chem. Phys. 105, 1902-1921.
- (1996) J. Chem. Phys. , vol.105 , pp. 1902-1921
- Neria, E.¹ Fischer, S.² Karplus, M.³

48
- 0033954256
- Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000) Nucleic Acids Res. 28, 235-242.
- (2000) Nucleic Acids Res. , vol.28 , pp. 235-242
- Berman, H.M.¹ Westbrook, J.² Feng, Z.³ Gilliland, G.⁴ Bhat, T.N.⁵ Weissig, H.⁶ Shindyalov, I.N.⁷ Bourne, P.E.⁸

49
- 0004016501
- Jorgensen, W. L., Chandrasekhar, J., Madura, J., Impley, R. W. & Klein, M. L. (1983) J. Chem. Phys. 79, 926-935.
- (1983) J. Chem. Phys. , vol.79 , pp. 926-935
- Jorgensen, W.L.¹ Chandrasekhar, J.² Madura, J.³ Impley, R.W.⁴ Klein, M.L.⁵

50
- 0032080053
- Sheinerman, F. B. & Brooks, C. L., III (1998) J. Mol. Biol. 278, 439-455.
- (1998) J. Mol. Biol. , vol.278 , pp. 439-455
- Sheinerman, F.B.¹ Brooks C.L. III²

51
- 84870726202
- Academic, San Diego
- Frenkel, D. & Smit, B. (1996) Understanding Molecular Simulation: From Algorithms to Applicudons (Academic, San Diego).
- (1996) Understanding Molecular Simulation: From Algorithms to Applicudons
- Frenkel, D.¹ Smit, B.²

52
- 84986519238
- Kumar, S., Bouzida, D., Swendsen, R. H., Kollman, P. A. & Rosenberg, J. M. (1992) J. Comp. Chem. 13, 1011-1021.
- (1992) J. Comp. Chem. , vol.13 , pp. 1011-1021
- Kumar, S.¹ Bouzida, D.² Swendsen, R.H.³ Kollman, P.A.⁴ Rosenberg, J.M.⁵

53
- 0033548553
- Ferguson, N., Capaldi, A. P., James, R., Kleanthous, C. & Radford, S. E. (1999) J. Mol. Biol. 286, 1597-1609.
- (1999) J. Mol. Biol. , vol.286 , pp. 1597-1609
- Ferguson, N.¹ Capaldi, A.P.² James, R.³ Kleanthous, C.⁴ Radford, S.E.⁵

54
- 0035965128
- Gorski, S. A., Capaldi, A. P., Kleanthous, C. & Radford, S. E. (2001) J. Mol. Biol. 312, 849-863.
- (2001) J. Mol. Biol. , vol.312 , pp. 849-863
- Gorski, S.A.¹ Capaldi, A.P.² Kleanthous, C.³ Radford, S.E.⁴

55
- 0032539561
- Sheinerman, F. B. & Brooks, C. L., III (1998) Proc. Natl. Acad. Sci. USA 95, 1562-1567.
- (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1562-1567
- Sheinerman, F.B.¹ Brooks C.L. III²

56
- 0037076337
- len Wolde, P. R. & Chandler, D. (2002) Proc. Natl. Acad. Sci. USA 99, 6539-6543.
- (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 6539-6543
- Len Wolde, P.R.¹ Chandler, D.²

57
- 0030967896
- Guo, Z., Boczko, E. M. & Brooks, C. L., III (1997) Proc. Natl. Acad. Sci. USA 94, 10161-10166.
- (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10161-10166
- Guo, Z.¹ Boczko, E.M.² Brooks C.L. III³

58
- 0033578828
- Dinner, A. R. & Karplus, M. (1999) J. Mol. Biol. 292, 403-419.
- (1999) J. Mol. Biol. , vol.292 , pp. 403-419
- Dinner, A.R.¹ Karplus, M.²

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.