-
1
-
-
0033117763
-
Matching theory and experiment in protein folding
-
Alm E., Baker D. Matching theory and experiment in protein folding. Curr. Opin. Struct. Biol. 9:1999;189-196.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 189-196
-
-
Alm, E.1
Baker, D.2
-
2
-
-
0031472252
-
Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: Description of the folding pathway
-
Bond C. J., Wong K. B., Clarke J., Fersht A. R., Daggett V. Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway. Proc. Natl Acad. Sci. USA. 94:1997;13409-13413.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 13409-13413
-
-
Bond, C.J.1
Wong, K.B.2
Clarke, J.3
Fersht, A.R.4
Daggett, V.5
-
3
-
-
0029151245
-
First-principles calculation of the folding free energy of a three-helix bundle protein
-
Bozcko E. M., Brooks C. L. III. First-principles calculation of the folding free energy of a three-helix bundle protein. Science. 269:1995;393-396.
-
(1995)
Science
, vol.269
, pp. 393-396
-
-
Bozcko, E.M.1
Brooks C.L. III2
-
4
-
-
0032053619
-
Simulations of protein folding and unfolding
-
Brooks C. L. III. Simulations of protein folding and unfolding. Curr. Opin. Struct. Biol. 8:1998;222-226.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 222-226
-
-
Brooks C.L. III1
-
5
-
-
0027256738
-
Realistic simulation of native protein dynamics in solution and beyond
-
Daggett V., Levitt M. Realistic simulation of native protein dynamics in solution and beyond. Annu. Rev. Biophys. Biomol. Struct. 22:1993;353-380.
-
(1993)
Annu. Rev. Biophys. Biomol. Struct.
, vol.22
, pp. 353-380
-
-
Daggett, V.1
Levitt, M.2
-
6
-
-
0029981188
-
Structure of the transition state for folding of a protein derived from experiment and simulation
-
Daggett V., Li A., Itzhaki L. S., Otzen D. E., Fersht A. R. Structure of the transition state for folding of a protein derived from experiment and simulation. J. Mol. Biol. 257:1996;430-440.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 430-440
-
-
Daggett, V.1
Li, A.2
Itzhaki, L.S.3
Otzen, D.E.4
Fersht, A.R.5
-
8
-
-
0029589911
-
Specific interactions outside the proline-rich core of two classes of Src homology 3 ligands
-
Feng S., Kasahara C., Rickles R. J., Schreiber S. L. Specific interactions outside the proline-rich core of two classes of Src homology 3 ligands. Proc. Natl Acad. Sci. USA. 92:1995;12408-12415.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 12408-12415
-
-
Feng, S.1
Kasahara, C.2
Rickles, R.J.3
Schreiber, S.L.4
-
10
-
-
0029004611
-
The volume of atoms on the protein surface: Calculated from simulation, using Voronoi polyhedra
-
Gerstein M., Tsai J., Levitt J. The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra. J. Mol. Biol. 249:1995;955-966.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 955-966
-
-
Gerstein, M.1
Tsai, J.2
Levitt, J.3
-
11
-
-
0031444104
-
Folding dynamics of the src SH3 domain
-
Grantcharova V. P., Baker D. Folding dynamics of the src SH3 domain. Biochemistry. 36:1997;15685-15692.
-
(1997)
Biochemistry
, vol.36
, pp. 15685-15692
-
-
Grantcharova, V.P.1
Baker, D.2
-
12
-
-
0031853167
-
Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain
-
Grantcharova V. P., Riddle D. S., Santiago J. V., Baker D. Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain. Nature Struct. Biol. 5:1998;714-720.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 714-720
-
-
Grantcharova, V.P.1
Riddle, D.S.2
Santiago, J.V.3
Baker, D.4
-
13
-
-
0030967896
-
Exploring the folding free energy surface of a three-helix bundle protein
-
Guo Z., Brooks C. L. R., Boczko E. M. Exploring the folding free energy surface of a three-helix bundle protein. Proc. Natl Acad. Sci. USA. 94:1997;10161-10166.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 10161-10166
-
-
Guo, Z.1
Brooks, C.L.R.2
Boczko, E.M.3
-
14
-
-
0029062353
-
The crystal structure of the N-terminal SH3 domain of Grb2
-
Guruprasad L., Dhanaraj V., Timm D., Blundell T. L., Gout I., Waterfield M. D. The crystal structure of the N-terminal SH3 domain of Grb2. J. Mol. Biol. 248:1995;856-866.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 856-866
-
-
Guruprasad, L.1
Dhanaraj, V.2
Timm, D.3
Blundell, T.L.4
Gout, I.5
Waterfield, M.D.6
-
15
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis P. J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24:1991;946-950.
-
(1991)
J. Appl. Crystallog.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
16
-
-
0032555115
-
Synergy between simulation and experiment in describing the energy landscape of protein folding
-
Ladurner A. G., Itzhaki L. S., Daggett V., Fersht A. R. Synergy between simulation and experiment in describing the energy landscape of protein folding. Proc. Natl Acad. Sci. USA. 95:1998;8473-8478.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 8473-8478
-
-
Ladurner, A.G.1
Itzhaki, L.S.2
Daggett, V.3
Fersht, A.R.4
-
17
-
-
0031465967
-
"new view" of protein folding reconciled with the old through multiple unfolding simulations
-
Lazaridis T., Karplus M. "New view" of protein folding reconciled with the old through multiple unfolding simulations. Science. 278:1997;1928-1931.
-
(1997)
Science
, vol.278
, pp. 1928-1931
-
-
Lazaridis, T.1
Karplus, M.2
-
18
-
-
0029633167
-
Potential energy function and parameters for simulation of the molecular dynamics of proteins and nucleic acids in solution
-
Levitt M., Hirshberg M., Sharon R., Daggett V. Potential energy function and parameters for simulation of the molecular dynamics of proteins and nucleic acids in solution. Comp. Phys. Commun. 91:1995;215-231.
-
(1995)
Comp. Phys. Commun.
, vol.91
, pp. 215-231
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Daggett, V.4
-
19
-
-
0032579189
-
Molecular dynamics simulation of the unfolding of barnase: Characterization of the major intermediate
-
Li A., Daggett V. Molecular dynamics simulation of the unfolding of barnase: characterization of the major intermediate. J. Mol. Biol. 275:1998;677-694.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 677-694
-
-
Li, A.1
Daggett, V.2
-
20
-
-
0031825181
-
Obligatory steps in protein folding and the conformational diversity of the transition state
-
Martinez J. C., Pisabarro M. T., Serrano L. Obligatory steps in protein folding and the conformational diversity of the transition state. Nature Struct. Biol. 5:1998;721-729.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 721-729
-
-
Martinez, J.C.1
Pisabarro, M.T.2
Serrano, L.3
-
22
-
-
0030852463
-
Functional rapidly folding protein from simplified amino acid sequences
-
Riddle D. S., Santiago J. V., Bray-Hill S. T., Doshi N., Grantcharova V. P., Baker D. Functional rapidly folding protein from simplified amino acid sequences. Nature Struct. Biol. 4:1997;805-809.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 805-809
-
-
Riddle, D.S.1
Santiago, J.V.2
Bray-Hill, S.T.3
Doshi, N.4
Grantcharova, V.P.5
Baker, D.6
-
25
-
-
0032080053
-
Calculations on folding of segment B1 of streptococcal protein G
-
Sheinerman F. B., Brooks C. L. R. Calculations on folding of segment B1 of streptococcal protein G. J. Mol. Biol. 278:1998;439-456.
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 439-456
-
-
Sheinerman, F.B.1
Brooks, C.L.R.2
-
26
-
-
0000710672
-
Diffusive dynamics of the reaction coordinate for protein folding funnels
-
Socci N. D., Onuchic J. N., Wolynes P. G. Diffusive dynamics of the reaction coordinate for protein folding funnels. J. Chem. Phys. 104:1996;5860-5868.
-
(1996)
J. Chem. Phys.
, vol.104
, pp. 5860-5868
-
-
Socci, N.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
27
-
-
0031454652
-
Simulating the minimum core for hydrophobic collapse in globular proteins
-
Tsai J., Gerstein M., Levitt M. Simulating the minimum core for hydrophobic collapse in globular proteins. Protein Sci. 6:1997;2606-2616.
-
(1997)
Protein Sci.
, vol.6
, pp. 2606-2616
-
-
Tsai, J.1
Gerstein, M.2
Levitt, M.3
-
28
-
-
0030043196
-
A comparison of structural and dynamic properties of different simulation methods applied to SH3
-
van Aalten D. M., Amadei A., Bywater R., Findlay J. B., Berendsen H. J., Sander C., Stouten P. F. A comparison of structural and dynamic properties of different simulation methods applied to SH3. Biophys. J. 70:1996;684-692.
-
(1996)
Biophys. J.
, vol.70
, pp. 684-692
-
-
Van Aalten, D.M.1
Amadei, A.2
Bywater, R.3
Findlay, J.B.4
Berendsen, H.J.5
Sander, C.6
Stouten, P.F.7
-
29
-
-
84927514013
-
Nouveles applications des paramétres continus á la théorie de formes quadratiques
-
Voronoi G. F. Nouveles applications des paramétres continus á la théorie de formes quadratiques. J. Reine Agnew. Math. 134:1908;198-287.
-
(1908)
J. Reine Agnew. Math.
, vol.134
, pp. 198-287
-
-
Voronoi, G.F.1
-
30
-
-
0031025991
-
Three-dimensional structure of the tyrosine kinase c-Src
-
Xu W., Harrison S. C., Eck M. J. Three-dimensional structure of the tyrosine kinase c-Src. Nature. 385:1997;595-602.
-
(1997)
Nature
, vol.385
, pp. 595-602
-
-
Xu, W.1
Harrison, S.C.2
Eck, M.J.3
-
31
-
-
0032538302
-
Prediction and structural characterization of an independently folding substructure in the src SH3 domain
-
Yi Q., Bystroff C., Rajagopal P., Klevit R. E., Baker D. Prediction and structural characterization of an independently folding substructure in the src SH3 domain. J. Mol. Biol. 283:1998;293-300.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 293-300
-
-
Yi, Q.1
Bystroff, C.2
Rajagopal, P.3
Klevit, R.E.4
Baker, D.5
-
32
-
-
0027335694
-
13N assignments and secondary structure of the Src SH3 domain
-
13N assignments and secondary structure of the Src SH3 domain. FEBS Letters. 324:1993;87-92.
-
(1993)
FEBS Letters
, vol.324
, pp. 87-92
-
-
Yu, H.1
Rosen, M.K.2
Schreiber, S.L.3
-
33
-
-
0028882223
-
Simple model of protein folding kinetics
-
Zwanzig R. Simple model of protein folding kinetics. Proc. Natl Acad. Sci. USA. 92:1995;9801-9804.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 9801-9804
-
-
Zwanzig, R.1
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