Sequence-specific DNA binding by the vnd/NK-2 homeodomain of Drosophila

Proceedings of the National Academy of Sciences of the United States of America

Volumn 99, Issue 20, 2002, Pages 12721-12726

  Wang, Lan Hsiang ^a   Chmelik, Rebecca ^a   Nirenberg, Marshall ^a  

^a NATIONAL HEART LUNG AND BLOOD INSTITUTE   (United States)

Author keywords

DNA binding site; Homeobox; Neurobiology

Indexed keywords

AMINO ACID; HOMEODOMAIN PROTEIN; NEUROKININ 2; NEUROKININ DERIVATIVE; OLIGODEOXYNUCLEOTIDE; SEPHAROSE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BASE PAIRING; BINDING AFFINITY; BINDING COMPETITION; BINDING SITE; COLUMN CHROMATOGRAPHY; COVALENT BOND; DISSOCIATION CONSTANT; DROSOPHILA; EQUILIBRIUM CONSTANT; ESCHERICHIA COLI; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN PURIFICATION;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BINDING SITES; BINDING, COMPETITIVE; CLONING, MOLECULAR; DNA; DNA, COMPLEMENTARY; DROSOPHILA; DROSOPHILA PROTEINS; ESCHERICHIA COLI; HOMEODOMAIN PROTEINS; KINETICS; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDES; PLASMIDS; PROTEIN BINDING; TRANSCRIPTION FACTORS;

ESCHERICHIA COLI;

EID: 0036789946     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.202461199     Document Type: Article

References (50)

1. Gehring, W. J., Affolter, M. & Bürglin, T. (1994) Annu. Rev. Biochem. 63, 487-526.
2. Mannervik, M. (1999) BioEssays 21, 267-270.
3. Gehring, W. J., Qian, Y. Q., Billeter, M., Furukubo-Tokunaga, K., Schier, A. F., Rosendez-Perez, D., Affolter, M., Otting, G. & Wüthrich, K. (1994) Cell 78, 211-223.
4. Khorasanizadeh, S. & Rastinejad, F. (1999) Curr. Biol. 9, R456-R458.
5. Laughon, A. (1991) Biochemistry 30, 11359-11367.
6. Ekker, S. C., Jackson, D. G., von Kessler, D. P., Sun, B. I., Young, K. E. & Beachy, P. A. (1994) EMBO J. 13, 3551-3560.
7. Shen, W.-F., Rozenfeld, S., Lawrence, H. J. & Largman, C. (1997) J. Biol. Chem. 272, 8198-8206.
8. Kim, Y. & Nirenberg, M. (1989) Proc. Natl. Acad. Sci. USA 86, 7716-7720.
9. Jimenez, F., Martin-Morris, L. E., Velasco, L., Chu, H., Sierra, J., Rosen, D. R. & White, K. (1995) EMBO J. 14, 3487-3495.
10. Nirenberg, M., Nakayama, K., Nakayama, N., Kim, Y., Mellerick, D., Wang, L.-H., Webber, K. O. & Lad, R. (1995) Ann. N.Y. Acad. Sci. 758, 224-242.
11. Cornell, R. A. & Ohlen, T. V. (2000) Curr. Opin. Neurobiol. 10, 63-71.
12. Zhao, G. & Skeath, J. B. (2002) Development (Cambridge, U.K.) 129, 1165-1174.
13. Mellerick, D. M. & Modica, V. (2002) J. Neurobiol. 50, 118-136.
14. Tsao, D. H. H., Gruschus, J. M., Wang, L.-H., Nirenberg, M. & Ferretti, J. A. (1994) Biochemistry 33, 15053-15060.
15. Tsao, D. H. H., Gruschus, J. M., Wang, L.-H., Nirenberg, M. & Ferretti, J. A. (1995) J. Mol. Biol. 251, 297-307.
16. Gruschus, J. M., Tsao, D. H. H., Wang, L.-H., Nirenberg, M. & Ferretti, J. A. (1997) Biochemistry 36, 5372-5380.
17. Gruschus, J. M., Tsao, D. H. H., Wang, L.-H., Nirenberg, M. & Ferretti, J. A. (1999) J. Mol. Biol. 289, 529-545.
18. Weiler, S., Gruschus, J. M., Tsao, D. H. H., Yu, L., Wang, L.-H., Nirenberg, M. & Ferretti, J. A. (1998) J. Biol. Chem. 273, 10994-11000.
19. Skeath, J. B., Panganiban, G. F. & Carroll, S. B. (1994) Development (Cambridge, U.K.) 120, 1517-1524.
20. Weiss, J. B., von Ohlen, T., Mellerick, D. M., Dressler, G., Doe, C. Q. & Scott, M. P. (1998) Genes Dev. 12, 3591-3602.
21. Price, M., Lazzaro, D., Pohl, T., Mattei, M. G., Ruther, U., Olivo, J. C., Duboule, D. & Di Lauro, R. (1992) Neuron 8, 241-255.
22. Pohlenz, J., Dumitrescu, A., Zundel, D., Martiné, U., Schönberger, W., Koo, E., Weiss, R. E., Cohen, R. N., Kimura, S. & Rofetoff, S. (2002) J. Clin. Invest. 109, 469-473.
23. Pabst, O., Herbrand, H. & Arnold, H.-H. (1998) Mech. Dev. 73, 85-93.
24. Qia, M., Shimamura, K., Sussel, L., Chen, S. & Rubenstein, J. L. R. (1998) Mech. Dev. 72, 77-88.
25. Bodmer, R. (1993) Development (Cambridge, U.K.) 118, 719-729.
26. Lints, T. J., Parsons, L. M., Hartley, L., Lyons, I. & Harvey, R. P. (1993) Development (Cambridge, U.K.) 119, 419-431.
27. Komuro, I. & Izumo, S. (1993) Proc. Natl. Acad. Sci. USA 90, 8145-8149.
28. Cleaver, O. B., Patterson, K. D. & Krieg, P. A. (1996) Development (Cambridge, U.K.) 122, 3549-3556.
29. Tanaka, M., Schinke, M., Liao, H.-S., Yamasaki, N. & Izumo, S. (2001) Mol. Cell. Biol. 21, 4391-4398.
30. Guazzi, S., Price, M., De Felice, M., Damante, G., Mattei, M. G. & Di Lauro, R. (1990) EMBO J. 9, 3631-3639.
31. Sussel, L., Kalamaras, J. Hartigan-O'Connor, D. J., Meneses, J. J., Pedersen, R. A., Rubenstein, J. L. R. & German, M. S. (1998) Development (Cambridge, U.K.) 125, 2213-2221.
32. Apergis, G. A., Crawford, N., Ghosh, D., Steppan, C. M., Vorachek, W. R., Wen, P. & Locker, J. (1998) J. Biol. Chem. 273, 2917-2925.
33. Mennerich, D., Hoffmann, S., Hadrys, T., Arnold, H.-H. & Bober, E. (1999) Biol. Chem. 380, 1041-1048.
34. Tang, S. & Breitman, M. L. (1995) Nucleic Acids Res. 23, 1928-1935.
35. Steadman, D. J., Giuffrida, D. & Gelmann, E. P. (2000) Nucleic Acids Res. 28, 2389-2395.
36. Ekker, S. C., Young, K. E., von Kessler, D. P. & Beachy, P. A. (1991) EMBO J. 10, 1179-1186.
37. Affolter, M., Percival-Smith, A., Müller, M., Leupin, W. & Gehring, W. J. (1990) Proc. Natl. Acad. Sci. USA 87, 4093-4097.
38. Florence, B., Handrow, R. & Laughon, A. (1991) Mol. Cell. Biol. 11, 3613-3623.
39. Odenwald, W. F., Garbern, J., Arnheiter, H., Tournier-Lasserve, E. & Lazzarini, R. A. (1989) Genes Dev. 3, 158-172.
40. Ekker, S. C., von Kessler, D. P. & Beachy, P. A. (1992) EMBO J. 11, 4059-4072.
41. Damante, G., Fabbro, D., Pellizzari, L., Civitareale, D., Guazzi, S., Polycarpou-Schwartz, M., Cauci, S., Quandrifoglio, F., Formisano, S. & Di Lauro, R. (1994) Nucleic Acids Res. 22, 3075-3083.
42. Watada, H., Mirmira, R. G., Kalamaras, J. & German, M. S. (2000) Proc. Natl. Acad. Sci. USA 97, 9443-9448.
43. Chen, C. Y. & Schwartz, R. J. (1995) J. Biol. Chem. 270, 15628-15633.
44. Okkema, P. G. & Fire, A. (1994) Development (Cambridge, U.K.) 120, 2175-2186.
45. Gajewski, K., Kim, Y., Lee, Y. M., Olson, E. N. & Schulz, R. A. (1997) EMBO J. 16, 515-522.
46. Christophe-Hobertus, C. & Christophe, D. (1999) Mol. Cell. Endocrinol. 149, 79-84.
47. Gereben, B., Salvatore, D., Harney, J. W., Tu, H. M. & Larsen, P. R, (2001) Mol. Endocrinol. 15, 112-124.
48. Endo, T., Kaneshige, M., Nakazato, M., Ohmori, M., Harii, N. & Onaya, T. (1997) Mol. Endocrinol. 11, 1747-1755.
49. Nishida, W., Makamura, M., Mori, S., Takahashi, M., Ohkawa, Y., Tadokoro, S., Yoshida, K., Hiwada, K., Hayashi, K. & Sobue, K. (2002) J. Biol. Chem. 277, 7308-7317.
50. Habets, P. E. M. H., Moorman, A. F. M., Clout, D. E. W., van Roon, M. A., Lingbeek, M., van Lohuizen, M., Campione, M. & Christoffels, V. M. (2002) Genes Dev. 16, 1234-1246.