Towards the molecular dissection of fertilization signaling: Our functional genomic/proteomic strategies

Proteomics

Volumn 2, Issue 9, 2002, Pages 1079-1089

  Sato, Ken Ichi ^a,b,c   Iwasaki, Tetsushi ^a   Sakakibara, Ken Ichi ^c   Itakura, Shuji ^c   Fukami, Yasuo ^b,c  

^a Research Center for Environmental Genomics   (Japan)

^b Laboratory of Genetics   (Japan)

^c KOBE UNIVERSITY   (Japan)

Author keywords

Fertilization; Genome; Proteome; Signal transduction

Indexed keywords

DNA; PROTEIN TYROSINE KINASE;

CONFERENCE PAPER; DNA SEQUENCE; FERTILIZATION; GENE FUNCTION; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; SIGNAL TRANSDUCTION; XENOPUS LAEVIS;

ANIMALS; EGG PROTEINS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FERTILIZATION; GENOME; MODELS, BIOLOGICAL; OOCYTES; PROTEOME; SIGNAL TRANSDUCTION; SRC-FAMILY KINASES; XENOPUS LAEVIS; XENOPUS PROTEINS;

ANURA; XENOPUS (GENUS); XENOPUS LAEVIS;

EID: 0036745413     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/1615-9861(200209)2:9<1079::AID-PROT1079>3.0.CO;2-P     Document Type: Conference Paper

References (124)

1. International Human Genome Sequencing Consortium., Nature 2001, 409, 860-921.
2. Venter, J. C, Adams, M. D., Myers, E. W., Li, P. W. et al., Science 2001, 291, 1304-1351.
3. Goffeau, A., Barrell, B. G., Bussey, H., Davis, R. W. et al., Science 1996, 274, 563-567.
4. The C. elegans Sequencing Consortium., Science 1998, 282, 2012-2018.
5. The Arabidopsis Genome Initiative., Nature 2000, 408, 796-815.
6. Lee, K. H., Trends Biotechnol. 2001, 19, 217-222.
7. Wilkins, M. R., Sanchez, J.-C., Gooley, A. A., Appel, R. D. et al., Biotech. Genet. Engin. Rev. 1995, 13, 19-50.
8. Görg, A., Postel, W., Günther, S., Electrophoresis 1988, 9, 531-546.
9. Görg, A., Obermaier, C., Boguth, G., Harder, A. et al., Electrophoresis 2000, 21, 1037-1053.
10. Görg, A., in: Blackstock, W., Mann, M., (Eds.), Proteomics: A Trends Guide, Elsevier Science, Oxford, UK 2000, pp. 3-6.
11. Herbert, B. R., Harry, J. L., Packer, N. H., Gooley, A. A. et al., Trends Biotechnol. 2001, 19 (Suppl), S 3-9.
12. Zuo, X., Speicher, D. W., Proteomics 2002, 2, 58-68.
13. Santoni, V., Rabilloud, T., Doumas, P., Rouquie, D. et al., Electrophoresis 1999, 20, 705-711.
14. Garin, J., Diez, R., Kieffer, S., Dermine, J. F. et al., J. Cell. Biol. 2001, 152, 165-180.
15. Schubert, M., Petersson, U. A, Haas, B. J., Funk, C. et al., J. Biol. Chem. 2002, 277, 8354-8365.
16. Hanson, B. J., Schulenberg, B., Patton, W. F., Capaldi, R. A., Electrophoresis 2001, 22, 950-959.
17. Dreger, M., Bengtsson, L., Schöneberg, T., Otto, H., Hucho, F., Proc. Natl. Acad. Sci. USA 2001, 98, 11943-11948.
18. Molloy, M. P., Herbert, B. R., Slade, M. B., Rabilloud, T. et al., Eur. J. Biochem. 2000, 267, 2871-2881.
19. Neubauer, G., Gottschalk, A., Fabrizio, P., Seraphin, B. et al., Proc. Natl. Acad. Sci. USA 1997, 94, 385-390.
20. Husi, H., Ward, M. A., Choudhary, J. S., Blackstock, W. P., Grant, S. G., Nat. Neurosci. 2000, 3, 661-669.
21. Vorm, O., King, A., Bernnett, K. L., Leber, T., Mann, M., in: Blackstock, W., Mann, M., (Eds.), Proteomics: A Trends Guide, Elsevier Science, Oxford, UK 2000, pp. 43-47.
22. Grant, S. G., Husi, H., Trends Biotechnol. 2001, 19 (Suppl), S 49-54.
23. Rabilloud, T., Proteomics 2002, 2, 3-10.
24. Gygi, S. P., Corthals, G. L., Zhang, Y., Rochon, Y., Aebersold, R., Proc. Natl. Acad. Sci. USA 2000, 97, 9390-9395.
25. Corthals, G. L., Wasinger, V. C., Hochstrasser, D. F., Sanchez, J. C., Electrophoresis 2000, 21, 1104-1115.
26. Futcher, B., Latter, G. I., Monardo, P., McLaughlin, C. S., Garrels, J. I., Mol. Cell. Biol. 1999, 19, 7357-7368.
27. Schulz-Knappe, P., Zucht, H. D., Heine, G., Jurgens, M. et al., Comb. Chem. High Throughput Screen. 2001, 4, 207-217.
28. Schrader, M., Schulz-Knappe, P., Trends Biotechnol. 2001, 19 (Suppl), S 55-60.
29. Heine, G., Raida, M., Forssmann, W. G., J. Chromatogr. 1997, 776, 117-124.
30. Spahr, C. S., Davis, M. T., McGinley, M. D., Robinson, J. H. et al., Proteomics 2001, 1, 93-107.
31. Britton, J. R., Kastin, A. J., Am. J. Med Sci. 1991, 301, 124-132.
32. Washburn, M. P., Wolters, D., Yates, J. R., Nat. Biotechnol. 2001, 19, 242-247.
33. Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F. et al., Nat. Biotechnol. 1999, 17, 994-999.
34. Moseley, M. A., Trends Biotechnol. 2001, 19 (Suppl), S 10-16.
35. Vuong, G. L., Weiss, S. M., Kammer, W., Priemer, M. et al., Electrophoresis 2000, 21, 2594-2605.
36. Smolka, M. B., Zhou, H., Purkayastha, S., Aebersold, R., Anal. Biochem. 2001, 297, 25-31.
37. Hunter, T., Cell 2000, 100, 113-127.
38. Cohen, P., Trends Biochem. Sci. 2000, 25, 596-601.
39. Jensen, O. N., in: Blackstock, W., Mann, M., (Eds.), Proteomics: A Trends Guide, Elsevier Science, Oxford, UK 2000, pp. 36-42.
40. Soskic, V., Görlach, M., Poznanovic, S., Boehmer, F. D. et al., Biochemistry. 1999, 38, 1757-1764.
41. Pandey, A., Podtelejnikov, A. V., Blagoev, B., Bustelo, X. R. et al., Proc. Natl. Acad. Sci. USA 2000, 97, 179-184.
42. Kuster, B., Krogh, T. N., Mortz, E., Harvey, D. J., Proteomics 2001, 1, 350-361.
43. Wilkins, M. R., Gasteiger, E., Gooley, A. A., Herbert, B. R. et al., J. Mol. Biol. 1999, 289, 645-657.
44. Conrads, T. P., Issaq, H. J., Veenstra, T. D., Biochem. Biophys. Res. Commun. 2002, 290, 885-890.
45. Oda, Y., Nagasu, T., Chait, B. T., Nat. Biotechnol. 2001, 19, 379-382.
46. Zhou, H., Watts, J. D., Aebersold, R., Nat. Biotechnol. 2001, 19, 375-378.
47. Goshe, M. B., Conrads, T. P., Panisko, E. A., Angell, N. H. et al., Anal. Chem. 2001, 73, 2578-2586.
48. Jenkins, R. E., Pennington, S. R., Proteomics 2001, 1, 13-29.
49. Zhou, H., Roy, S., Schulman, H., Natan, M. J., Trends Biotechnol. 2001, 19 (Suppl), S 34-39.
50. Li, M., Nat. Biotechnol. 2000, 18, 1251-1256.
51. Hayhurst, A., Georgiou, G., Curr. Opin. Chem. Biol. 2001, 5, 683-689.
52. Fisch, I., Comb. Chem. High Throughput Screen. 2001, 4, 157-169.
53. Zozulya, S., Lioubin, M., Hill, R. J., Abram, C., Gishizky, M. L., Nat. Biotechnol. 1999, 17, 1193-1198.
54. Natsume, T., Nakayama, H., Isobe, T., Trends Biotechnol. 2001, 19 (Suppl), S 28-33.
55. McDonnell, J. M., Curr. Opin. Chem. Biol. 2001, 5, 572-577.
56. Myszka, D. G., Rich, R. L., Pharm. Sci. Technol. Today 2000, 3, 310-317.
57. Nelson, R. W., Nedelkov, D., Tubbs, K. A., Electrophoresis 2000, 21, 1155-1163.
58. Ito, T., Chiba, T., Yoshida, M., Trends Biotechnol. 2001, 19 (Suppl), S 23-27.
59. Walhout, A. J., Boulton, S. J., Vidal, M., Yeast 2000, 17, 88-94.
60. Ito, T., Chiba, T., Ozawa, R., Yoshida, M. et al., Proc. Natl. Acad. Sci. USA 2001, 98, 4569-4574.
61. Ito, T., Tashiro, K., Muta, S., Ozawa, R., et al., Proc. Natl. Acad. Sci. USA 2000, 97, 1143-1147.
62. Schwikowski, B., Uetz, P., Fields, S., Nat. Biotechnol. 2000, 18, 1257-1261.
63. Uetz, P., Giot, L., Cagney, G., Mansfield, T. A. et al., Nature 2000, 403, 623-627.
64. Zhu, H., Bilgin, M., Bangham, R., Hall, D. et al., Science 2001, 293, 2101-2105.
65. Tucker, C. L., Gera, J. F., Uetz, P., Trends Cell Biol. 2001, 11, 102-106.
66. Choudhary, J. S., Blackstock, W. P., Creasy, D. M., Cottrell, J. S., Trends Biotechnol. 2001, 19 (Suppl), S 17-22.
67. Searls, D. B., Annu. Rev. Genomics Hum. Genet. 2000, 1, 251-279.
68. Jhoti, H., Trends Biotechnol. 2001, 19 (Suppl), S 67-71.
69. Hurley, J. H., Anderson, D. E., Beach, B., Canagarajah, B. et al., Trends Biochem. Sci. 2002, 27, 48-53.
70. Jove, R., Hanafusa, H., Annu. Rev. Cell Biol. 1987, 3, 31-56.
71. Brown, M. T., Cooper, J. A., Biochim. Biophys. Acta 1996, 1287, 121-149.
72. Thomas, S. M, Brugge, J. S., Annu. Rev. Cell Dev. Biol. 1997, 13, 513-609.
73. Abram, C. L., Courtneidge, S. A., Exp. Cell Res. 2000, 254, 1-13.
74. Schwartzberg, P. L., Oncogene 1998, 17, 1463-1468.
75. Sato, K., Aoto, M., Mori, K., Akasofu, S. et al., J. Biol. Chem. 1996, 271, 13250-13257.
76. Sato, K., Iwasaki, T., Tamaki, I., Aoto, M. et al., FEBS Lett. 1998, 424, 113-118.
77. Sato, K., Iwao, Y., Fujimura, T., Tamaki, I. et al., Dev. Biol. 1999, 209, 308-320.
78. Sato, K., Tokmakov, A. A., Iwasaki, T., Fukami, Y., Dev. Biol. 2000, 224, 453-469.
79. Sato, K., Tokmakov, A. A., Fukami, Y., Comp. Biochem. Physiol. B Biochem. Mol. Biol. 2000, 126, 129-148.
80. Longo, F. J., Fertilization, Second Ed., Chapman & Hall, London, UK 1997.
81. Yanagimachi, R., in: Knobil, E., Neill, J. D. (Eds.)., The Physiology of Reproduction, Second Ed., Raven Press, New York 1994, pp. 189-317.
82. Stricker, S. A., Dev. Biol. 1999, 211, 157-176.
83. Miyazaki, S., Shirakawa, H., Nakada, K., Honda, Y., Dev. Biol. 1993, 158, 62-78.
84. Glahn, D., Mark, S. D., Behr, R. K., Nuccitelli, R., Dev. Biol. 1999, 205, 171-180.
85. Abassi, Y. A., Carroll, D. J., Giusti, A. F., Belton, R. J. Jr., Foltz, K. R., Dev. Biol. 2000, 218, 206-219.
86. Kinsey, W. H., Shen, S. S., Dev. Biol. 2000, 225, 253-264.
87. Giusti, A. F., Carroll, D. J., Abassi, Y. A., Terasaki, M. et al., J. Biol. Chem. 1999, 274, 29318-29322.
88. Giusti, A. F., Carroll, D. J., Abassi, Y. A., Foltz, K. R., Dev. Biol. 1999, 208, 189-199.
89. Wu, W., Kinsey, W. H., Int. J. Dev. Biol. 2000, 44, 837-841.
90. Ben-Yosef, D., Talmor, A., Shwartz, L., Granot, Y., Shalgi, R., Mol. Reprod. Dev. 1998, 49, 176-185.
91. Dupont, G., McGuinness, O. M., Johnson, M. H., Berridge, M. J., Borgese, F., Biochem. J. 1996, 316, 583-591.
92. Nuccitelli, R., Curr. Top. Dev. Biol. 1991, 25, 1-16.
93. Jaffe, L. A., in: Schultz, S. G., Andreoli, T. E., Brown, A. M., Fambrough, D. M. et al., (Eds.), Molecular Biology of Membrane Transport Disorders, Plenum Press, New York, USA 1996, pp. 367-378.
94. Jaffe, L. A., Giusti, A. F., Carroll, D. J., Foltz, K. R., Semin. Cell Dev. Biol. 2001, 12, 45-51.
95. Ciapa, B., Chiri, S., Biol. Cell 2000, 92, 215-233.
96. Schultz, R. M., Kopf, G. S., Curr. Top. Dev. Biol. 1995, 30, 21-62.
97. Swann, K., Parrington, J., J. Exp. Zool. 1999, 285, 267-275.
98. Wassarman, P. M., Jovine, L., Litscher, E. S., Nat. Cell Biol. 2001, 3, E 59-64.
99. Simons, K., Ikonen, E., Nature 1997, 387, 569-572.
100. Brown, D. A., London, E., Annu. Rev. Cell Dev. Biol. 1998, 14, 111-136.
101. Brown, D. A., Proc. Natl. Acad. Sci. USA 2001, 98, 10517-10518.
102. Kurzchalia, T. V., Parton, R. G., Curr. Opin. Cell Biol. 1999, 11, 424-431.
103. von Haller, P. D., Donohoe, S., Goodlett, D. R., Aebersold, R., Watts, J. D., Proteomics 2001, 1, 1010-1021.
104. Sato, K., Iwasaki, T., Ogawa, K., Konishi, M. et al., Development, 2002, 129, 885-896.
105. Almeida, E. A., Huovila, A. P., Sutherland, A. E., Stephens, L. E. et al., Cell 1995, 81, 1095-1104.
106. Evans, J. P., Kopf, G. S., Schultz, R. M., Dev. Biol. 1997, 187, 79-93.
107. Fenichel, P., Durand-Clement, M., Hum. Reprod. 1998, 13 (Suppl), 31-46.
108. Miyado, K., Yamada, G., Yamada, S., Hasuwa, H. et al., Science 2000, 287, 321-324.
109. Le Naour, F., Rubinstein, E., Jasmin, C., Prenant, M., Boucheix, C., Science 2000, 287, 319-321.
110. Kaji, K., Oda, S., Shikano, T., Ohnuki, T. et al., Nat. Genet. 2000, 24, 279-282.
111. Kilsdonk, E. P., Yancey, P. G., Stoudt, G. W., Bangerter, F. W. et al., J. Biol. Chem. 1995, 270, 17250-17256.
112. Carroll, D. J., Albay, D. T., Terasaki, M., Jaffe, L. A., Foltz, K. R., Dev. Biol. 1999, 206, 232-247.
113. Carroll, D. J., Ramarao, C. S., Mehlmann, L. M., Roche, S. et al., J. Cell. Biol. 1997, 138, 1303-1311.
114. Wu, H., Smyth, J., Luzzi, V., Fukami, K. et al., Biol. Reprod. 2001, 64, 1338-1349.
115. Murray, A. W., Methods Cell Biol. 1991, 36, 581-605.
116. Desai, A., Murray, A., Mitchison, T. J., Walczak, C. E., Methods Cell Biol. 1999, 61, 385-412.
117. Wickens, M., Goodwin, E. B., Kimble, J., Strickland, S., Hentze, M. W., in: Sonenberg, N., Hershey, J. W. B., Mathews, M. B. (Eds.), Translational Control of Gene Expression, Cold Spring Harbor, New York, USA 2000, pp. 295-370.
118. Wang, X., Ruffolo, R. R. Jr., Feuerstein, G. Z., Trends Pharmacol. Sci. 1996, 17, 276-279.
119. Zhang, J. S., Duncan, E. L., Chang, A. C., Reddel, R. R., Mol. Biotechnol. 1998, 10, 155-165.
120. Livesey, F. J., Hunt, S. P., Trends Neurosci. 1996, 19, 84-88.
121. Matthew, W. D., Sandrock, A. W. Jr., J. Immunol. Methods 1987, 100, 73-82.
122. Sleeman, J. P., Kim, U., LePendu, J., Howells, N. et al., Oncogene 1999, 18, 4485-4494.
123. Denegre, J. M., Ludwig, E. R., Mowry, K. L., Dev. Biol. 1997, 192, 446-454.
124. Sleister, H. M., Rao, A. G., J. Immunol. Methods 2001, 252, 121-129.