Microarray analysis of bacterial patogenicity

Advances in Microbial Physiology

Volumn 46, Issue , 2002, Pages 1-45

  Schoolnik, Gary K ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; COMPLEMENTARY DNA; ISONIAZID; MESSENGER RNA; PERTUSSIS TOXIN; TRANSCRIPTION FACTOR; TUBERCULOSTATIC AGENT;

ANIMAL MODEL; BACTERIAL GROWTH; BACTERIAL INFECTION; BACTERIAL PNEUMONIA; BACTERIAL VIRULENCE; BIOSYNTHESIS; BORDETELLA PERTUSSIS; DNA MICROARRAY; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENETIC VARIABILITY; GENOME; HELICOBACTER PYLORI; HOST CELL; LISTERIA MONOCYTOGENES; LUNG ALVEOLUS CELL; MACROPHAGE; MYCOBACTERIUM BOVIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PASTEURELLA MULTOCIDA; PATHOGENICITY; PERTUSSIS; POLYMERASE CHAIN REACTION; PSEUDOMONAS AERUGINOSA; RESPIRATORY TRACT INFECTION; REVIEW; SALMONELLA TYPHIMURIUM; STRAIN DIFFERENCE; STREPTOCOCCUS PNEUMONIAE; TISSUE SPECIFICITY; TRANSCRIPTION REGULATION; TUBERCULOSIS; ANIMAL; GENETICS; GENOMICS; GRAM NEGATIVE BACTERIUM; GRAM NEGATIVE INFECTION; GRAM POSITIVE BACTERIUM; HUMAN; METHODOLOGY; MOUSE; PATHOLOGY; PHYSIOLOGY; VIRULENCE;

ANIMALIA; BACTERIA (MICROORGANISMS); BORDETELLA; BORDETELLA PERTUSSIS; ESCHERICHIA COLI; HELICOBACTER; HELICOBACTER PYLORI; LISTERIA; LISTERIA MONOCYTOGENES; MYCOBACTERIUM; MYCOBACTERIUM BOVIS; MYCOBACTERIUM TUBERCULOSIS; PASTEURELLA; PASTEURELLA MULTOCIDA; PROKARYOTA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; SALMONELLA TYPHIMURIUM; STREPTOCOCCUS; STREPTOCOCCUS PNEUMONIAE;

ANIMALS; GENE EXPRESSION REGULATION, BACTERIAL; GENOMICS; GRAM-NEGATIVE BACTERIA; GRAM-NEGATIVE BACTERIAL INFECTIONS; GRAM-POSITIVE BACTERIA; GRAM-POSITIVE BACTERIAL INFECTIONS; HUMANS; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; TRANSCRIPTION FACTORS; VIRULENCE;

EID: 0036051847     PISSN: 00652911     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0065-2911(02)46001-8     Document Type: Review

References (65)

1. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
2. A novel application of gene arrays: Escherichia coli array provides insight into the biology of the obligate endosymbiont of tsetse flies
3. Acid-induced gene expression in Helicobacter pylori: Study in genomic scale by microarray
4. Global gene expression profiling in Escherichia coli K-12
5. Global analysis of Escherichia coli gene expression during the acetate-induced acid tolerance response
6. Differential expression of over 60 chromosomal genes in Escherichia coli by constitutive expression of MarA
7. Comparative genomics of BCG vaccines by whole-genome DNA microarray
8. The transcriptional response of respiratory epithelial cells to Bordetella pertussis reveal host defensive and pathogen counter-defensive strategies
9. Metal-ion tolerance in Escherichia coli: Analysis of transcriptional profiles by gene-array technology
10. Monitoring cellular responses to Listeria monocytogenes with oligonucleotide arrays
11. Using DNA microarrays to study host-microbe interactions
12. Exploring the metabolic and genetic control of gene expression on a genomic scale
13. Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide
14. Host microarray analysis reveals a role for the Salmonella response regulator phoP in human macrophage cell death
15. Genomic interspecies microarray hybridization: Rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames
16. DNA arrays for analysis of gene expression
17. Cluster analysis and display of genome-wide expression patterns
18. Observing the living genome
19. Acid resistance in enteric bacteria
20. Monotoring gene expression using DNA microarrays
21. Interaction of Pseudomonas aeruginosa with epithelial cells: Identification of differentially regulated genes by expression microarray analysis of human cDNAs
22. Helicobacter pylori strain-specific differences in genetic content, identified by microarray, influence host inflammatory responses
23. Integrated pathway-genome databases and their role in drug discovery
24. The EcoCyc and MetaCyc databases
25. Comparing genomes within the species Mycobacterium tuberculosis
26. DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli
27. Whole genome sequence of meticillin-resistant Staphylococcus aureus
28. Global analysis of the genetic network controlling a bacterial cell cycle
29. Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
30. High density synthetic oligonucleotide arrays
31. Expression monitoring by hybridization to high-density oligonucleotide arrays
32. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework
33. E: Role in global gene expression and survival in macrophages
34. Inhibition of a Mycobacterium tuberculosis beta-ketoacyl ACP synthase by isoniazid
35. Environmental signals controlling the expression of virulence determinants in bacteria
36. Evolutionary dynamics of full genome content in Escherichia coli
37. Genes lost and genes found: Evolution of bacterial pathogenesis and symbiosis
38. Pasteurella multocida gene expression in response to iron limitation
39. Genome sequence of enterohemorrhagic Escherichia coli O157:H7
40. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
41. Genome-wide expression profiling in Escherichia coli K- 12
42. Global analysis of transcription kinetics during competence development in Streptococcus pneumoniae using high density DNA arrays
43. Salmonella typhimurium infection and lipopolysaccharide stimulation induce similar changes in macrophage gene expression
44. Modification of the NADH of the isoniazid target (InhA) from Mycobacterium tuberculosis
45. A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains
46. Quantitative monitoring of gene expression patterns with a complementary DNA microarray
47. Whole genome DNA microarray expression analysis of biofilm development by Vibrio cholerae O1 El Tor
48. RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
49. Regulation of the Mycobacterium tuberculosis hypoxic response gene encoding alpha-crystallin
50. Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA
51. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
52. Functional genomics: Expression analysis of Escherichia coli growing on minimal and rich media
53. A genomic analysis of two-component signal-transduction in Streptococcus pneumoniae
54. The complete genome sequence of the gastric pathogen Helicobacter pylori
55. Significance analysis of microarrays applied to the ionizing radiation response
56. Small RNAs in Escherichia coli
57. Identification of novel small RNAs using comparative genomic microarrays
58. Dynamics of submerged growth of Mycobacterium tuberculosis under aerobic and microaerophilic conditions
59. High-density microarray-mediated gene expression profiling of Escherichia coli
60. Global impact of sdiA amplification revealed by comprehensive gene expression of Escherichia coli
61. Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization
62. Functional genomics of Mycobacterium tuberculosis using DNA microarrays
63. Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions
64. DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide
65. Nitrogen regulatory protein C-controlled genes of Escherichia coli: Scavenging as a defense against nitrogen limitation