Nitrogen regulatory protein C-controlled genes of Escherichia coli: Scavenging as a defense against nitrogen limitation

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 26, 2000, Pages 14674-14679

  Zimmer, Daniel P ^a   Soupene, Eric ^a   Lee, Haidy L ^a   Wendisch, Volker F ^a,e   Khodursky, Arkady B ^c   Peter, Brian J ^b   Bender, Robert A ^d   Kustu, Sydney ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c STANFORD UNIVERSITY MEDICAL CENTER   (United States)

^d UNIVERSITY OF MICHIGAN   (United States)

^e FORSCHUNGSZENTRUM JÜLICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; NITROGEN REGULATORY PROTEIN C; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GROWTH; ESCHERICHIA COLI; GENE CONTROL; GENE EXPRESSION; GENETIC ANALYSIS; NONHUMAN; OPERON; PRIORITY JOURNAL; SCAVENGING SYSTEM; TRANSCRIPTION REGULATION;

ARTIFICIAL GENE FUSION; BACTERIAL PROTEINS; CHEMICAL FRACTIONATION; DNA-BINDING PROTEINS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; LAC OPERON; NITROGEN; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PERIPLASM; PHOSPHOPROTEIN PHOSPHATASE; PII NITROGEN REGULATORY PROTEINS; PROTEIN KINASES; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

EID: 0034687819     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.26.14674     Document Type: Article

References (56)

1. Ikeda, T. P., Shauger, A. E. & Kustu, S. (1996) J. Mol. Biol. 259, 589-607.
2. Muse, W. B. & Bender, R. A. (1998) J. Bacteriol. 180, 1166-1173.
3. Pomposiello, P. J., Janes, B. K. & Bender, R. A. (1998) J. Bacteriol. 180, 578-585.
4. Khodursky, A. B., Peter, B. J., Cozzarelli, N. R., Botstein, D., Brown, P. O. & Yanofsky, C. (2000) Proc. Natl. Acad. Sci. USA 97, 12170-12175. (First published October 10, 2000; 10.1073/pnas.220414297)
5. Schena, M., Shalon, D., Davis, R. W. & Brown, P. O. (1995) Science 270, 467-470.
6. Blattner, F. R., Plunkett, G., 3rd, Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., et al. (1997) Science 277, 1453-1474.
7. He, L., Soupene, E. & Kustu, S. (1997) J. Bacteriol. 179, 7446-7455.
8. Chen, Y. M., Backman, K. & Magasanik, B. (1982) J. Bacteriol. 150, 214-220.
9. Backman, K., Chen, Y. M. & Magasanik, B. (1981) Proc. Natl. Acad. Sci. USA 78, 3743-3747.
10. Lessard, I. A., Pratt, S. D., McCafferty, D. G., Bussiere, D. E., Hutchins, C., Wanner, B. L., Katz, L. & Walsh, C. T. (1998) Chem. Biol. 5, 489-504.
11. Kustu, S. G., McFarland, N. C., Hui, S. P., Esmon, B. & Ames, G. F. (1979) J. Bacteriol. 138, 218-234.
12. Jacob, F. & Monod, J. (1961) J. Mol. Biol. 3, 318-356.
13. Soupene, E., He, L., Yan, D. & Kustu, S. (1998) Proc. Natl. Acad. Sci. USA 95, 7030-7034.
14. Ames, G. F., Prody, C. & Kustu, S. (1984) J. Bacteriol. 160, 1181-1183.
15. Chuang, S. E., Daniels, D. L. & Blattner, F. R. (1993) J. Bacteriol. 175, 2026-2036.
16. Lin-Chao, S. & Cohen, S. N. (1991) Cell 65, 1233-1242.
17. Eisen, M. B., Spellman, P. T., Brown, P. O. & Botstein, D. (1998) Proc. Natl. Acad. Sci. USA 95, 14863-14868.
18. Ninfa, A. J. & Magasanik, B. (1986) Proc. Natl. Acad. Sci. USA 83, 5909-5913.
19. Qi, F. & Turnbough, C. L., Jr. (1995) J. Mol. Biol. 254, 552-565.
20. Urbanowski, M. L., Stauffer, L. T. & Stauffer, G. V. (2000) Mol. Microbiol. 37, 856-868.
21. Claverie-Martin, F. & Magasanik, B. (1991) Proc. Natl. Acad. Sci. USA 88, 1631-1635.
22. Nohno, T. & Saito, T. (1987) Nucleic Acids Res. 15, 2777.
23. Schellhorn, H. E., Audia, J. P., Wei, L. I. & Chang, L. (1998) J. Bacteriol. 180, 6283-6291.
24. Pistocchi, R., Kashiwagi, K., Miyamoto, S., Nukui, E., Sadakata, Y., Kobayashi, H. & Igarashi, K. (1993) J. Biol. Chem. 268, 146-152.
25. Pratt, L. A., Hsing, W., Gibson, K. E. & Silhavy, T. J. (1996) Mol. Microbiol. 20, 911-917.
26. Andrews, J. C., Blevins, T. C. & Short, S. A. (1986) J. Bacteriol. 165, 428-433.
27. Andrews, J. C. & Short, S. A. (1986) J. Bacteriol. 165, 434-442.
28. Calvo, J. M. & Matthews, R. G. (1994) Microbiol. Rev. 58, 466-490.
29. Smith, M. W. & Payne, J. W. (1992) FEMS Microbiol. Lett. 79, 183-190.
30. Paulsen, I. T., Sliwinski, M. K. & Saier, M. H., Jr. (1998) J. Mol. Biol. 277, 573-592.
31. Lessard, I. A. & Walsh, C. T. (1999) Proc. Natl. Acad. Sci. USA 96, 11028-11032.
32. Fraley, C. D., Kim, J. H., McCann, M. P. & Matin, A. (1998) J. Bacteriol. 180, 4287-4290.
33. Lu, C. D. & Abdelal, A. T. (1999) J. Bacteriol. 181, 1934-1938.
34. Schneider, B. L., Kiupakis, A. K. & Reitzer, L. J. (1998) J. Bacteriol. 180, 4278-4286.
35. Iwanicka-Nowicka, R. & Hryniewicz, M. M. (1995) Gene 166, 11-17.
36. Feng, J., Goss, T. J., Bender, R. A. & Ninfa, A. J. (1995) J. Bacteriol. 177, 5523-5534.
37. Ferro-Luzzi Ames, G. & Nikaido, K. (1985) EMBO J. 4, 539-547.
38. Schmitz, G., Dürre, P., Mullenbach, G. & Ames, G. F. (1987) Mol. Gen. Genet. 209, 403-407.
39. Schmitz, G., Nikaido, K. & Ames, G. F. (1988) Mol. Gen. Genet. 215, 107-117.
40. Craig, J. E., Zhang, Y. & Gallagher, M. P. (1994) Mol. Microbiol. 11, 1159-1168.
41. Kahane, S., Levitz, R. & Halpern, Y. S. (1978) J. Bacteriol. 135, 295-299.
42. Metzer, E. & Halpern, Y. S. (1990) J. Bacteriol. 172, 3250-3256.
43. Niegemann, E., Schulz, A. & Bartsch, K. (1993) Arch. Microbiol. 160, 454-460.
44. Abouhamad, W. N. & Manson, M. D. (1994) Mol. Microbiol. 14, 1077-1092.
45. Hirschman, J., Wong, P. K., Sei, K., Keener, J. & Kustu, S. (1985) Proc. Natl. Acad. Sci. USA 82, 7525-7529.
46. Hunt, T. P. & Magasanik, B. (1985) Proc. Natl. Acad. Sci. USA 82, 8453-8457.
47. Reitzer, L. J. & Magasanik, B. (1985) Proc. Natl. Acad. Sci. USA 82, 1979-1983.
48. Xi, H., Schneider, B. L. & Reitzer, L. (2000) J. Bacteriol. 182, 5332-5341.
49. Thieffry, D., Salgado, H., Huerta, A. M. & Collado-Vides, J. (1998) Bioinformatics 14, 391-400.
50. Reitzer, L. J. (1996) in Escherichia coli and Salmonella: Cellular and Molecular Biology, ed. Neidhardt, F. C. (Am. Soc. Microbiol., Washington, DC), Vol. I, pp. 380-390.
51. van der Ploeg, J. R., Iwanicka-Nowicka, R., Kertesz, M. A., Leisinger, T. & Hryniewicz, M. M. (1997) J. Bacteriol. 179, 7671-7678.
52. Tuomanen, E., Markiewicz, Z. & Tomasz, A. (1988) J. Bacteriol. 170, 1373-1376.
53. Wyman, C., Rombel, I., North, A. K., Bustamante, C. & Kustu, S. (1997) Science 275, 1658-1661.
54. Newbury, S. F., Smith, N. H. & Higgins, C. F. (1987) Cell 51, 1131-1143.
55. Higgins, C. F., McLaren, R. S. & Newbury, S. F. (1988) Gene 72, 3-14.
56. Blumenthal, T. (1998) BioEssays 20, 480-487.