Monophyly and generic relationships polemoniaceae based on matK sequences

American Journal of Botany

Volumn 83, Issue 9, 1996, Pages 1207-1224

  Johnson, Leigh A ^a   Schultz, Joanna L ^b   Soltis, Douglas E ^c   Soltis, Pamela S ^c  

^a RANCHO SANTA ANA BOTANIC GARDEN   (United States)

^b LEWIS CLARK STATE COLLEGE   (United States)

^c WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

chloroplast DNA; matK; parsimony; phylogenetics; Polemoniaceae; sequences

Indexed keywords

EID: 0029862060     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.2307/2446205     Document Type: Article

References (120)

1. BAUM, D. A., K. J. SYTSMA, AND P. C. HOCH. 1994. A phylogenetic analysis of Epilobium (Onagraceae) based on nuclear ribosomal DNA sequences. Systematic Botany 19: 363-388.
2. BENTHAM, G. 1833. Polemoniaceae. Botanical Register 19: folio 1622.
3. BERGELSON, J., AND M. J. CRAWLEY. 1992. The effects of grazers on the performance of individuals and populations of scarlet gilia Ipomopsis aggregata. Oecologia 90: 435-444.
4. BRAND A. 1907. Polemoniaceae. In A. Engler [ed.], Das Pflanzenreich IV. 250. 1-203. Engelmann, Leipzig.
5. _. 1908. Polemoniacea peruviana. Botanische Jahrbücher für Systematik 42: 174-175.
6. BREMER, K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795-803.
7. BROWN, W. H. 1938. The bearing of nectaries on the phylogeny of flowering plants. Proceedings of the American Philosophical Society 79: 549-594.
8. CAMPBELL, D. R. 1991. Comparing pollen dispersal and gene flow in a natural population. Evolution 45: 1965-1968.
9. _, AND N. M. WASER. 1989. Variation in pollen flow within and among populations of Ipomopsis aggregata. Evolution 43: 1444-1455.
10. _, _, AND M. V. PRICE. 1994. Indirect selection of stigma position in Ipomopsis aggregata via a genetically correlated trait. Evolution 48: 55-68.
11. CARLQUIST, S., V. M. ECKHART, AND D. C. MICHENER. 1984 Wood anatomy of Polemoniaceae. Aliso 10: 547-572.
12. CHASE, M. W., ET AL. 1993. Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Annals of the Missouri Botanical Garden 80: 528-580.
13. CHUANG, T.-I., W. C. HSIEH, AND D. H. WILKEN. 1978. Contribution of pollen morphology to systematics of Collomia (Polemoniaceae). American Journal of Botany 65: 450-458.
14. CRESSWELL, J. E., AND C. GALEN. 1991. Frequency-dependent selection and adaptive surfaces for floral character combinations: the pollination of Polemonium viscosum. American Naturalist 138: 1342-1353.
15. CRONQUIST, A. 1981. An integrated system of classification of flowering plants. Columbia University Press, New York, NY.
16. _, A. H. HOLMGREN, N. H. HOLMGREN, J. L. REVEAL, AND P. K. HOLMGREN. 1984. Polemoniaceae. In Intermountain flora, vol. 4, 86-155. New York Botanical Garden, Bronx, NY.
17. DAHLGREN, R. M. T. 1980. A revised system of classification of the angiosperms. Botanical Journal of the Linnean Society 80: 91-124.
18. DAY, A. G. 1993. New taxa and nomenclatural changes in Allophyllum, Gilia, and Navarretia (Polemoniaceae). Novon 3: 331-340.
19. _. 1965. The evolution of a pair of sibling allotetraploid species of cobwebby gilias (Polemoniaceae). Aliso 6: 25-75.
20. _, AND R. MORAN. 1986. Acanthogilia, a new genus of Polemoniaceae from Baja California, Mexico. Proceedings of the California Academy of Sciences 44: 111-126.
21. DEAN, F. M., A. M. B. S. R. C. S. COSTA, J. B. HARBORNE, AND D. M. SMITH. 1978 Leptodactylone, a yellow coumarin from Leptodactylon and Linanthus species. Phytochemistry 17: 505-509.
22. DON, D. 1824. Observations on a new natural family of plants to be called Cobaeaceae. Edinburgh Philosophical Journal 10: 109-112.
23. DON, G. 1838. A general history of the dichlamydeous plants, vol. 4, 237-249. London
24. DONOGHUE, M. J., AND W. P. MADDISON. 1986. Polarity assessment in phylogenetic systematics: a response to Meacham. Taxon 35: 534-538.
25. _, AND R. G. OLMSTEAD, J. F. SMITH, AND J. D. PALMER. 1992. Phylogenetic relationships of Dipsacales based on rbcL sequences. Annals of the Missouri Botanical Garden 79: 333-345.
26. DOWNIE, S. R., AND J. D. PALMER. 1992. Restriction site mapping of the chloroplast DNA inverted repeat: a molecular phylogeny of the Asteridae. Annals of the Missouri Botanical Garden 79: 266-283.
27. DOYLE, J. J., AND J. L. DOYLE. 1987. A rapid isolation procedure for small quantities of fresh leaf tissue. Phylochemical Bulletin 19: 11-15.
28. FELSENSTEIN, J. 1978. Cases in which parsimony and compatibility methods will be positively misleading. Systematic Zoology 27: 401-410.
29. _. 1985. Confidence limits on phylogenics: an approach using the bootstrap. Evolution 39: 783-791.
30. _, AND H. KISHINO. 1993. Is there something wrong with the bootstrap on phylogenies? A reply to Hillis and Bull. Systematic Biology 42: 193-199.
31. GALEN, C. 1989. Measuring pollinator-mediated selection on morphometric floral traits: bumblebees and the alpine skypilot Polemonium viscosum. Evolution 43: 882-890.
32. _. 1990. Limits to the distributions of alpine tundra plants: herbivores and the alpine skypilot, Polemonium viscosum. Oikos 59: 355-358.
33. _. 1992. Pollen dispersal dynamics in an alpine wildflower, Polemonium viscosum. Evolution 46: 1043-1051.
34. GOLDEN, M., AND R. PATTERSON. 1988. Taxonomic implications of pollen surface morphology in Linanthus and Leptodactylon (Polemoniaceae). American Journal of Botany 75: 176 (Abstract).
35. GRANT, A., AND V. GRANT. 1955. The genus Allophyllum (Polemoniaceae). Aliso 3: 93-110.
36. GRANT, V. 1953 The role of hybridization in the evolution of the leafy-stemmed gilias. Evolution 7: 51-64.
37. _. 1956a. The influence of breeding habit on the outcome of natural hybridization in plants. American Naturalist 90: 319-322.
38. _. 1956b. A synopsis of Ipomopsis. Aliso 3: 351-362.
39. _. 1959. Natural history of the Phlox family, vol. 1, Systematic botany. Martinus Nijhoff, The Hague.
40. _. 1966. The selective origin of incompatibility barriers in the plant genus Gilia. American Naturalist 100: 99-118.
41. _, AND A. GRANT. 1954. Genetic and taxonomic studies in Gilia. VII. The woodland gilias. Aliso 3: 59-91.
42. _, AND _. 1956. Genetic and taxonomic studies in Gilia. X. Conspectus of the subgenus Gilia. Aliso 3: 297-300.
43. _, AND K A. GRANT. 1965. Flower pollination in the Phlox family Columbia University Press, New York, NY.
44. GRAY, A. 1848. A manual of the botany of the northern United States. James Munroe and Company, Boston, MA.
45. _. 1870. Revision of the North American Polemoniaceae. Proceedings of the American Academy of Arts and Sciences 8: 247-282
46. _. 1874. Contributions to the botany of North America. IV. Characters of various new species. Proceedings of the American Academy of Ans and Sciences 10: 75.
47. _. 1878. Synoptical flora of North America, 1st ed., 128-151. John Wilson and Son, Cambridge, MA.
48. GREENE, E. L. 1887a. Some American Polemoniaceae I. Pittonia 1: 120-139.
49. _. 1887b. New or noteworthy species. Pittonia 1: 141.
50. _. 1892. Some American Polemoniaceae II. Pittonia 2: 251-260.
51. _. 1898a. A new genus of Polemoniaceae. Pittonia 3: 29-30.
52. _. 1898b. Some western Polemoniaceae. Pittonia 3: 299-305.
53. HARBORNE, J. B., AND D. M. SMITH 1978. Correlations between anthocyanin chemistry and pollination ecology in the Polemoniaceae. Biochemical Systematics and Ecology 6: 127-130.
54. HARSHMAN, J. 1994. The effect of irrelevant characters on bootstrap values. Systematic Biology 43: 419-423.
55. HELM-BYCHOWSKI, K., AND J. CRACRAFT. 1993. Recovering phylogenetic signal from DNA sequences: relationships within the Corvine assemblage (class Aves) as inferred from complete sequences of the mitochondrial DNA cytochrome-b gene. Molecular Biology and Evolution 10: 1196-1214.
56. HIBBETT, D. S., AND R. VILGALYS. 1993. Phylogenetic relationships of Lintinus (Basidiomycotina) inferred from molecular and morphological characters. Systematic Botany 18: 409-433.
57. HILLIS, D. M., AND J. J. BULL. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192.
58. HOOKER, J. W. 1829. Gillia (sic.) gracilis. Botanical Magazine 56: tome 2924.
59. HOWELL, T. 1901. Polemoniaceae. In Flora of Northwest America, vol. 1, Fascicle 4, 456-463. Portland, Oregon, published by the author.
60. HUFFORD, L. 1992. Rosidae and their relationships to other nonmagnoliid dicotyledons: a phylogenetic analysis using morphological and chemical data. Annals of the Missouri Botanical Garden 79: 218-248.
61. HUMBOLDT, A., A. BONPLAND, AND C. S. KUNTH. 1823. Nova genera ct species plantarum, vol. 7, 83-85. Paris.
62. JOHNSON, L. A., AND D. E. SOLTIS. 1994. matK DNA sequences and phylogenetic reconstruction in Saxifragaceae s. str. Systematic Botany 19: 143-156.
63. _, AND _. 1995. Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Annals of the Missouri Botanic Garden 82: 149-175.
64. _, _, AND P. SOLTIS. 1994. Phylogenetic affinities in Gilia section Kelloggia (Polemoniaceae): inferences from chloroplast DNA matK sequences, nuclear ITS sequences, and morphology. American Journal of Botany 81: 163 (Abstract).
65. KIREDJIAN, M., AND D. M. SMITH. 1985. A chemosystematic investigation on Ipomopsis. Biochemical Systematics and Ecology 13: 141-143.
66. KOLBE, K.-P., AND J. JOHN. 1980 Serology and systematics of the Ebenales and the Theales. Biochemical Systematics and Ecology 8: 249-256.
67. LUNDBERG, J. G. 1972. Wagner networks and ancestors. Systematic Zoology 21: 398-413.
68. MADDISON, D R. 1991. The discovery and importance of multiple islands of most-parsimonious trees. Systematic Zoology 40: 315-328.
69. MADDISON, W. P., M. J. DONOGHUE, AND D. R. MADDISON. 1984. Outgroup analysis and parsimony. Systematic Zoology 33: 83-103.
70. _, AND D. R. MADDISON. 1992. MacClade, version 3.03. Sinauer, Sunderland, MA.
71. MASCHINSKI, J., AND T. G WHITHAM. 1989. The continuum of plant responses to herbivory: the influence of plant association, nutrient availability, and timing. American Naturalist 134: 1-19.
72. MASON, H. L. 1941. The taxonomic status of Microsteris Greene. Madroño 6: 122-127.
73. _. 1945. The genus Eriastrum and the influence of Bentham and Gray upon the problem of generic confusion in Polemoniaceae Madrono 8: 65-91.
74. _, AND A. D. GRANT. 1948. Some problems in the genus Gilia. Madroño 9: 169-200.
75. MEACHAM, C. A. 1984 The role of hypothesized direction of characters in the estimation of evolutionary history. Taxon 33: 26-38.
76. _. 1986. More about directed characters: a reply to Donoghue and Maddison. Taxon 35: 538-540.
77. MIYAMOTO, M. M., AND S. M. BOYLE. 1989. The potential importance of mitochondrial DNA sequence data to eutherian mammal phylogeny. In B Fernholm, K. Bremer, and H. Jõrnvall [eds.], The hierarchy of life, 437-450. Elsevier, Amsterdam.
78. MORGAN, D. R., D. E. SOLTIS, AND K. R. ROBERTSON. 1994. Systematic and evolutionary implications of rbcL sequence variation in Rosaceae. American Journal of Botany 81: 890-903.
79. NASH, G. V. 1903. A revision of the family Fouquieriaceae. Bulletin of the Torrey Botanical Club 30: 449-459.
80. lys (UUU) gene from mustard (Sinapis alba) contains a class II intron potentially coding for a maturase-related polypeptide. Current Genetics 11: 251-257.
81. NIXON, K. C., AND J M. CARPENTER. 1993. On outgroups. Cladistics 9: 413-426.
82. OLMSTEAD, R. G., B. BREMER, K. M. SCOTT, AND J. D. PALMER. 1993. A parsimony analysis of the Asteridae sensu lato based on rbcL sequences. Annals of the Missouri Botanical Garden 80: 700-722.
83. _, AND P. A. REEVES. 1995. Evidence for the polyphyly of the Scrophulariaceae based on chloroplast rbcL and ndhF sequences. Annals of the Missouri Botanical Garden 82: 176-194.
84. PAIGE, K. N., AND T. G. WHITHAM. 1987. Overcompensation in response to mammalian herbivory. the advantage of being eaten. American Naturalist 129: 407-416.
85. PATTERSON, R. 1977. The generic status of perennial species of Linanthus (Polemoniaceae). Taxon 26: 507-511.
86. _. 1989. Taxonomic relationships of Gilia maculata (Polemoniaceae). Madroño 36: 15-27.
87. _ [ed.]. 1993. Polemoniaceae. In J. C. Hickman [ed.], The Jepson manual: higher plants of California, 824-852. University of California Press, Berkeley, CA.
88. _, AND D. H. WILKEN. 1993. Phlox. In J. C. Hickman [ed.], The Jepson manual: higher plants of California, 849-852. University of California Press, Berkeley, CA.
89. PLITMANN, U., AND D. A. LEVIN. 1990. Breeding systems in the Polemoniaceae. Plant Systematics and Evolution 170: 205-214.
90. PLUNKETT, G M. 1994. A molecular-phylogenetic approach to the "family-pair dilemma" in Apiales and Cyperales. Ph. D. dissertation, Washington State University, Pullman, WA.
91. PORTER, J. M. In press. Phylogeny of Polemoniaceae based on nuclear ribosomal transcribed spacer DNA sequences. Aliso.
92. RAVEN, P. H. 1975. The bases of angiosperm phylogeny: cytology. Annals of the Missouri Botanic Garden 62: 724-764.
93. RYDBERG, P. A. 1917. Polemoniaceae. In A Flora of the Rocky Mountains and adjacent plains, 679-699. New York, published by the author.
94. SMITH, D. M., C. W. GLENNIE, AND J. B. HARBORNE. 1982. Flavonoid patterns in Leptodactylon and Linanthus. Biochemical Systematics and Ecology 10: 37-42.
95. _, _, _, AND C. A. WILLIAMS. 1977. Flavonoid diversification in the Polemoniaceae. Biochemical Systematics and Ecology 5: 107-115.
96. SOLTIS, D. E., R. K. KUZOFF, E. CONTI, R. GORNALL, AND K. FERGUSON. 1996. matK and rbcL gene sequence data indicate that Saxifraga is polyphyletic. American Journal of Botany 83: 371-382.
97. _, P. S. SOLTIS, T. G. COLLIER, AND M. L. EDGERTON. 1991. Chloroplast DNA variation within and among genera of the Heuchera group (Saxifragaceae): evidence for chloroplast transfer and paraphyly. American Journal of Botany 78: 1091-1112.
98. STEELE, K. P., AND R. VILGALYS. 1994. Phylogenetic analyses of Polemoniaceae using nucleotide sequences of the plastid gene matK. Systematic Botany 19: 126-142.
99. STUCHLIK, L. 1967a. Pollen morphology in the Polemoniaceae. Grana Palynologica 7: 146-240.
100. _. 1967b. Pollen morphology and taxonomy of the family Polemoniaceae. Review of Palaeobotany and Palynology 4: 325-333.
101. SWOFFORD, D. L. 1991. PAUP: phylogenetic analysis using parsimony, version 3.1.1. Illinois Natural History Survey, Champaign, IL.
102. _, AND G. J OLSEN. 1991. Phylogeny reconstruction. In D. M. Hillis and C. Moritz [eds.], Molecular Systematics, 411-501. Sinauer, Sunderland, MA.
103. TAKHTAJAN, A. L. 1973. Evolution und ausbrietung der blutenpflanzen. Fischer, Stuttgart.
104. _. 1987. Systema magnotiophytorum. Nauka, Leningrad.
105. TAYLOR, T. N., AND D. A. LEVIN. 1975. Pollen morphology of Polemoniaceae in relation to Systematics and pollination systems: scanning electron microscopy. Grana 15: 91-112.
106. THORNE, R. F. 1977. Some realignments in the Angiospermae. Plant Systematics and Evolution, Supplement 1: 299-319.
107. _. 1992. Classification and geography of the flowering plants. Botanical Review 58: 225-348.
108. TIMBROOK, S. 1986 Segregation of Loeseliastrum from Langloisia (Polemoniaceae). Madroño 33: 157-174.
109. TURNER, B. L. 1994. Taxonomic overview of Gilia section Giliastrum (Polemoniaceae) in Texas and Mexico. Phytologia 76: 52-68.
110. VENTENAT, E. P. 1794. Tableau du regne vegetal selon la nethode de Jussieu, vol. 2, 398-402.
111. WELCH, S. L., N D. ATWOOD, S. GOODRICH, AND L. C. HIGGINS. 1993. Polemoniaceae. In A Utah flora, 516-533. Brigham Young University Print Services, Provo, UT.
112. WHEELER, W. C. 1990. Nucleic acid sequence phylogeny and random outgroups. Cladistics 6: 363-367.
113. WHERRY, E. T. 1940. A provisional key to the Polemoniaceae. Bartonia 20: 14-17.
114. _. 1943. Microsteris, Phlox, and an intermediate. Brittonia 5: 60-63.
115. _. 1944. Review of the genera Collomia and Gymnosteris. American Midland Naturalist 31: 216-231.
116. WILKEN, D. H., AND R. L. HARTMAN. 1991. A revision of the Ipomopsis spicata complex (Polemoniaceae). Systematic Botany 16: 143-161.
117. _, D. M. SMITH, J. B. HARBORNE, AND C. W. GLENNIE. 1982. Flavonoid and anthocyanin patterns and the systematic relationships in Collomia. Biochemical Systematics and Ecology 10: 239-243.
118. WOLF, P. G., AND P. S. SOLTIS. 1992. Estimates of gene flow among populations, geographic races, and species in the Ipomopsis aggregata complex. Genetics 130: 639-647.
119. _, _. AND D. E. SOLTIS. 1993 Phylogenetic significance of chloroplast DNA restriction site variation in the Ipomopsis aggregata complex and related species (Polemoniaceae). Systematic Botany 18: 652-662.
120. WOLFE, K. H., C. W. MORDEN, AND J. D. PALMER. 1992. Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. Proceedings of the National Academy of Sciences, USA 89: 10648-10652.