The genome sequence of Yaba-like disease virus, a yatapoxvirus

Virology

Volumn 281, Issue 2, 2001, Pages 170-192

  Lee, Han Joo ^a   Essani, Karim ^b   Smith, Geoffrey L ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b WESTERN MICHIGAN UNIVERSITY   (United States)

Author keywords

Genome sequence; Immune evasion; Phylogeny; Virus evolution; Yatapoxvirus

Indexed keywords

CHEMOKINE RECEPTOR; GROWTH FACTOR; IMMUNOMODULATING AGENT; INTERLEUKIN 10; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; TRANSCRIPTION FACTOR;

ARTICLE; CHORDOPOXVIRINAE; DNA REPAIR; DNA REPLICATION; GENE SEQUENCE; LEPORIPOXVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; POXVIRUS; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION; VACCINIA VIRUS; YABA LIKE DISEASE VIRUS;

POXVIRIDAE; SWINEPOX VIRUS; TUMOR VIRUS; VACCINIA; VACCINIA VIRUS; YABA MONKEY TUMOR VIRUS; YABA-LIKE DISEASE VIRUS; YATAPOXVIRUS;

EID: 0035866622     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2000.0761     Document Type: Article

References (217)

1. The genome of Melanoplus sanguinipes entomopoxvirus
2. The genome of fowlpox virus
3. Identification of rpo30, a vaccinia virus RNA polymerase gene with structural similarity to a eucaryotic transcription elongation factor
4. Identification of the vaccinia virus gene encoding an 18-kilodalton subunit of RNA polymerase and demonstration of a 5′ poly(A) leader on its early transcript
5. RNA polymerase-associated transcription specificity factor encoded by vaccinia virus
6. Identification and expression of rpo19, a vaccinia virus gene encoding a 19-kilodalton DNA-dependent RNA polymerase subunit
7. The vaccinia virus soluble alpha/beta interferon (IFN) receptor binds to the cell surface and protects cells from the antiviral effects of IFN
8. Local alignment statistics
9. Basic local alignment search tool
10. Identification and characterization of the thymidine kinase gene of Yaba virus
11. Identification, sequence, and expression of the gene encoding a Mr 35,000 subunit of the vaccinia virus DNA-dependent RNA polymerase
12. Characterization of a 7-kilodalton subunit of vaccinia virus DNA-dependent RNA polymerase with structural similarities to the smallest subunit of eukaryotic RNA polymerase II
13. The complete genomic sequence of the modified vaccinia Ankara strain: Comparison with other orthopoxviruses
14. Mutational analysis of the core, spacer, and initiator regions of vaccinia virus intermediate-class promoters
15. Sequence homologies of diverse length tandem repetitions near ends of vaccinia virus genome suggest unequal crossing over
16. Incompletely base-paired flip-flop terminal loops link the two DNA strands of the vaccinia virus genome into one uninterrupted polynucleotide chain
17. Vaccinia virion protein 18R has both DNA and RNA helicase activities: Implications for vaccinia virus transcription
18. Vaccinia virion protein VP8, the 25 kDa product of the L4R gene, binds single-stranded DNA and RNA with similar affinity
19. An outbreak of subcutaneous tumors in rhesus monkeys
20. Vaccinia-virus encoded elF-2α homolog abrogates the antiviral effect of interferon
21. Functional analysis of the 5′ flanking sequence of a vaccinia virus late gene
22. The vaccinia virus A14.5L gene encodes a hydrophobic 53-amino-acid virion membrane protein that enhances virulence in mice and is conserved among vertebrate poxviruses
23. Identification by a random sequencing strategy of the fowlpoxvirus DNA polymerase gene, its nucleotide sequence and comparison with other viral DNA polymerases
24. A new DNA sequence assembly program
25. Sequence complexity and relative abundance of vaccinia virus mRNAs synthesized in vivo and in vitro
26. A poxvirus proteins that binds to and inactivates IL-18, and inhibits NK cell response
27. Non-essential genes in the vaccinia virus HindIII K fragment: A gene related to serine protease inhibitors and a gene related to the 37K vaccinia virus major envelope antigen
28. Shope fibroma virus RING finger protein N1R binds DNA and inhibits apoptosis
29. A complex between the MHC class I homologue encoded by human cytomegalovirus and beta 2 microglobulin
30. Vaccinia virus encodes a functional dUTPase
31. Vaccinia virus gene encoding a component of the viral early transcription factor
32. Homology between RNA polymerases of poxviruses, prokaryotes, and eukaryotes: Nucleotide sequence and transcriptional analysis of vaccinia virus genes encoding 147-kDa and 22-kDa subunits
33. The complete DNA sequence of myxoma virus
34. An ovarian tumor marker with homology to vaccinia virus contains an IgV-like region and multiple transmembrane domains
35. Sequence analysis of HindIII Q2 fragment of capripoxvirus reveals a putative gene encoding 8 G-protein-coupled chemokine receptor homologue
36. Electron microscopy of a benign epidermal pox disease of rhesus monkeys
37. DNA packaging mutant: Repression of the vaccinia virus A32 gene results in noninfectious, DNA-deficient, spherical, enveloped particles
38. Rescue of vaccinia virus lacking the E3L gene by mutants of E3L
39. The E3L gene of vaccinia virus encodes an inhibitor of the interferon-induced, double-stranded RNA-dependent protein kinase
40. Amino acid sequence determination of vaccinia virus immunodominant protein p35 and identification of the gene
41. Insertional inactivation of the large subunit of ribonucleotide reductase encoded by vaccinia virus is associated with reduced virulence in vivo
42. Vaccinia virus nucleoside triphosphate phosphohydrolase I is an essential viral early gene transcription termination factor
43. A27L protein mediates vaccinia virus interaction with cell surface heparan sulfate
44. Vaccinia virus B18R gene encodes a type I interferon-binding protein that blocks interferon α transmembrane signaling
45. Mutation of vaccinia virus gene G2R causes suppression of gene A18R ts mutants: Implications for control of transcription
46. A vaccinia virus core protein, p39, is membrane associated
47. Acidic C terminus of vaccinia virus DNA-binding protein interacts with ribonucleotide reductase
48. Structure of vaccinia virus late promoters
49. The fine structure of the Yaba monkey tumor poxvirus
50. Vaccinia NPH-I, a DExH-box ATPase, is the energy coupling factor for mRNA transcription termination
51. DNA sequence variation as a clue to the phylogenesis of orthopoxviruses
52. Comparison of Tanapox virus and Yaba-like viruses causing epidemic disease in monkeys
53. Tanapox: A new disease caused by a pox virus
54. Identification and characterization of an extracellular envelope glycoprotein affecting vaccinia virus egress
55. Genetic and biochemical characterization of vaccinia virus genes D2L and D3R which encode virion structural proteins
56. Homology between DNA polymerases of poxviruses, herpesviruses, and adenoviruses: Nucleotide sequence of the vaccinia virus DNA polymerase gene
57. A constitutively expressed vaccinia gene encodes a 42-kDa glycoprotein related to complement control factors that forms part of the extracellular virus envelope
58. A pox disease of monkeys transmittal to man
59. Electron microscopy of the Tana poxvirus
60. The preparation of orthopoxvirus DNA
61. Multiple anti-cytokine activities secreted from tanapox virus-infected cells
62. The vaccinia virus D5 protein, which is required for DNA replication, is a nucleic acid-independent nucleoside triphosphatase
63. Poxviruses
64. A homolog of interleukin-10 is encoded by the poxvirus orf virus
65. Use of a cell-free system to identify the vaccinia virus L1R gene product as the major late myristylated virion protein M25
66. Poly(A) polymerase and a dissociable polyadenylation stimulatory factor encoded by vaccinia virus
67. A comparison of the genome organization of capripoxvirus with that of the orthopoxviruses
68. The nucleotide sequence around the capripoxvirus thymidine kinase gene reveals a gene shared specifically with leporipoxvirus
69. Early transcription factor subunits are encoded by vaccinia virus late genes
70. Stimulation of poly(A) tail elongation by the VP39 subunit of the vaccinia virus-encoded poly(A) polymerase
71. The complete DNA sequence of vaccinia virus
72. An immunoadhesin incorporating the molecule OX-2 is a potent immunosuppressant that prolongs allo- and xenograft survival
73. Myxoma virus M11L ORF encodes a protein for which cell surface localization is critical in manifestation of viral virulence
74. A Tyr/Ser protein phosphatase encoded by vaccinia virus
75. Vaccinia virus G4L gene encodes a second glutaredoxin
76. The off virus OV20.0L gene product is involved in interferon resistance and inhibits an interferon-inducible, double-stranded RNA-dependent kinase
77. A contagious pox disease in monkeys
78. Field and vaccine strains of fowlpox virus carry integrated sequences from the avian retrovirus, reticuloendotheliosis virus
79. Localization and fine structure of a vaccinia virus gene encoding an envelope antigen
80. Vaccinia virus homologues of the Shope fibroma virus inverted terminal repeat proteins and a discontinuous ORF related to the tumor necrosis factor receptor family
81. Two early vaccinia virus genes encode polypeptides related to protein kinases
82. Fine structure analysis and nucleotide sequence of the vaccinia virus thymidine kinase gene
83. Vaccinia virus envelope D8L protein binds to cell surface chondroitin sulfate and mediates the adsorption of intracellular mature virions to cells
84. Expression of interleukin-10 activity by Epstein-Barr virus protein BCRF1
85. The A2L intermediate gene product is required for in vitro transcription from a vaccinia virus late promoter
86. Analysis of polymorphisms in the major expressed class I locus (B-FIV) of the chicken
87. Characterization of a vaccinia virus-encoded 42-kilodalton class I membrane glycoprotein component of the extracellular virus envelope
88. A myxoma virus nucleotide sequence with homology to the vaccinia virus RNA polymerase 22-kDa subunit gene
89. The myxoma virus thymidine kinase gene: Sequence and transcriptional mapping
90. The myxoma virus EcoRI-O fragment encodes the DNA binding core protein and the major envelope protein of extracellular poxvirus
91. Construction of recombinant myxoma viruses expressing foreign genes from different intergenic sites without associated attenuation
92. Myxoma virus encodes an α-2,3-sialyltransferase that enhances virulence
93. Identification of the major membrane and core proteins of vaccinia virus by two-dimensional electrophoresis
94. Subtraction hybridization identifies a novel melanoma differentiation associated gene, mda-7, modulated during human melanoma differentiation, growth and progression
95. The melanoma differentiation associated gene mda-7 suppresses cancer cell growth
96. Temperature-sensitive mutations in the vaccinia virus H4 gene encoding a component of the virion RNA polymerase
97. Vaccinia virus morphogenesis is blocked by a temperature-sensitive mutation in the 17 gene that encodes a virion component
98. Biosynthesis and phosphorylation of vaccinia virus structural protein VP11
99. cDNA cloning, tissue distribution, and identification of the catalytic triad of monoglyceride lipase. Evolutionary relationship to esterases, lysophospholipases, and haloperoxidases
100. Role of DNA replication in vaccinia virus gene expression: A naked template is required for transcription of three late trans-activator genes
101. Overexpression, purification, and late transcription factor activity of the 17-kilodalton protein encoded by the vaccinia virus A1L gene
102. Vaccinia DNA ligase complements Saccharomyces cerevisiae cdc9, localizes in cytoplasmic factories and affects virulence and virus sensitivity to DNA damaging agents
103. Vaccinia virus serpin B13R (SPI-2) inhibits interleukin-1β-converting enzyme and protects virus-infected cells from TNF- and Fas-mediated apoptosis, but does not prevent IL-1β-induced fever
104. The vaccinia virus I1 protein is essential for the assembly of mature virions
105. Induction of a novel cellular homolog of interleukin-10, AK155, by transformation of T lymphocytes with herpesvirus saimiri
106. Studies on tanapox virus
107. A highly conserved sequence motif defining the family of MutT-related proteins from eubacteria, eukaryotes and viruses
108. Gene A32 product of vaccinia virus may be an ATPase involved in viral DNA packaging as indicated by sequence comparisons with other putative viral ATPases
109. Inhibition of the complement cascade by the major secretory protein of vaccinia virus
110. Vaccinia virus encodes a secretory polypeptide structurally related to complement control proteins
111. The vaccinia virus H5R gene encodes late gene transcription factor 4: Purification, cloning, and overexpression
112. Experimental Yaba and benign epidermal monkey pox in rhesus monkeys
113. Vaccinia virus envelope H3L protein binds to cell surface heparan sulfate and is important for intracellular mature virion morphogenesis and virus infection in vitro and in vivo
114. Vaccinia protein kinase 2: A second essential serine/threonine protein kinase encoded by vaccinia virus
115. Membrane cofactor protein (MCP or CD46): Newest member of the regulators of complement activation gene cluster
116. The construction and characterization of vaccinia virus recombinants expressing foreign genes
117. Identification and analysis of three myristylated vaccinia virus late proteins
118. DNA sequence analysis of conserved and unique regions of swinepox virus: Identification of genetic elements supporting phenotypic observations including a novel G protein-coupled receptor homologue
119. Analysis of the complete genome of smallpox variola major virus strain Bangladesh-1975
120. Characterization of the human homolog of the rat MBC OX-2 membrane glycoprotein
121. Characterization of a processive form of the vaccinia virus DNA polymerase
122. Interruption of cytokine networks by poxviruses: Lessons from myxoma virus
123. A pox disease in monkeys transmitted to man. Clinical and histological features
124. Nucleotide sequence required for resolution of the concatemer junction of vaccinia virus DNA
125. Steroid hormone synthesis by a vaccinia enzyme: A new type of virus virulence factor
126. Identification of the DNA sequences encoding the large subunit of the mRNA-capping enzyme of vaccinia virus
127. Poxviridae: The viruses and their replication
128. Disruption of M-T5, a novel myxoma virus gene member of poxvirus host range superfamily, results in dramatic attenuation of myxomatosis in infected European rabbits
129. The white pock (μ) mutants of rabbit poxvirus, III. Terminal DNA sequence duplication and transposition in rabbit poxvirus
130. Inhibitory specificity of the anti-inflammatory myxoma virus serpin, SERP-1
131. Identification of two novel human putative serine/threonine kinases. VRK1 and VRK2, with structural similarity to vaccinia virus B1R kinase
132. In vitro characteristics of a poxvirus isolated from rhesus monkeys
133. Vaccinia virus gene D12L encodes the small subunit of the viral mRNA capping enzyme
134. Vaccinia virus gene D8 encodes a virion transmembrane protein
135. Subcutaneous growths in monkeys produced by poxvirus
136. Interleukin-18 binding protein: A novel modulator of the Th1 cytokine response
137. Detection of a protein encoded by the vaccinia virus C7L open reading frame and study of its effect on virus multiplication in different cell lines
138. TreeView: An application to display phylogenetic trees on personal computers
139. The vaccinia virus A38L gene product is a 33-kDa integral membrane glycoprotein
140. Vaccinia virus gene A36R encodes a M(r) 43-50 K protein on the surface of extracellular enveloped virus
141. The second-Pargest subunit of the poxvirus RNA polymerase is similar to the corresponding subunits of procaryotic and eucaryotic RNA polymerases
142. Vaccinia virus host range genes
143. Characterization of a myxoma virus-encoded serpin-like protein with activity against interleukin-1 β-converting enzyme
144. Spontaneous deletions and duplications of sequences in the genome of cowpox virus
145. Vaccinia virus gene D7R encodes a 20,000-dalton subunit of the viral DNA-dependent RNA polymerase
146. Preparation and functional properties of monoclonal antibodies to human, mouse and rat OX-2
147. Viral inhibition of inflammation: Cowpox virus encodes an inhibitor of the interleukin-1 β converting enzyme
148. Characterization of the single-stranded DNA binding protein encoded by the vaccinia virus 13 gene
149. Vaccinia virus A17L gene product is essential for an early step in virion morphogenesis
150. IPTG-dependent vaccinia virus: Identification of a virus protein enabling virion envelopment by Golgi membrane and egress
151. Extracellular vaccinia virus envelope glycoprotein encoded by the A33R gene
152. Purification and identification of a vaccinie virus-encoded intermediate stage promoter-specific transcription factor that has homology to eukaryotic transcription factor SII (TFIIS) and an additional role as a viral RNA polymerase subunit
153. Transcriptional and translational mapping and nucleotide sequence analysis of a vaccinia virus gene encoding the precursor of the major core polypeptide 4b
154. Conserved TAAATG sequence at the transcriptional and translational initiation sites of vaccinia virus late genes deduced by structural and functional analysis of the HindIII H genome fragment
155. The vaccinia virus HindIII F fragment: Nucleotide sequence of the left 6.2 kb
156. Interactions between vaccinia virus IEV membrane proteins and their roles in IEV assembly and actin tail formation
157. The molecular biology of Yaba tumour pox virus: Analysis of lipids, proteins and DNA
158. Nucleotide sequence of the Kaposi sarcoma-associated herpesvirus (HHV8)
159. Roles of vaccinia virus EEV-specific proteins in intracellular actin tail formation and low pH-induced cell-cell fusion
160. DNA sequencing with chain terminating inhibitors
161. Identification of a transcription factor, encoded by two vaccinia virus early genes, that regulates the intermediate stage of viral gene expression
162. Sequence and transcriptional analysis of the vaccinia virus HindIII I fragment
163. Identification and nucleotide sequence of the thymidine kinase gene of swinepox virus
164. SMART, a simple modular architecture research tool: Identification of signaling domains
165. Sequence and genomic analysis of a Rhesus macaque rhadinovirus with similarity to Kaposi's sarcoma-associated herpesvirus/human herpesvirus 8
166. Genome sequence of a human tumorigenic poxvirus: Prediction of specific host response-evasion genes
167. The genome of molluscum contagiosum virus: Analysis and comparison with other poxviruses
168. Domain structure, intracellular trafficking, and β2-microglobulin binding of a major histocompatibility complex class I homolog encoded by molluscum contagiosum virus
169. Comparison of the genome DNA sequences of Bangladesh-1975 and India-1967 variola viruses
170. The genomic sequence analysis of the left and right species-specific terminal region of a cowpox virus strain reveals unique sequences and a cluster of intact ORFs for immunomodulatory and host range proteins
171. Alastrim smallpox variola minor virus genome DNA sequences
172. Down regulation of gene expression by the vaccinia virus D10 protein
173. Vaccinia virus RNA helicase: An essential enzyme related to the DE-H family of RNA-dependent NTPases
174. Identification of a vaccinia virus gene encoding a type I DNA topoisomerase
175. Vaccinia virus gene A18R encodes an essential DNA helicase
176. Nucleotide sequence of 42 kbp of vaccinia virus strain WR from near the right inverted terminal repeat
177. Vaccinia virus encodes a family of genes with homology to serine proteinase inhibitors
178. Poxviruses: Interfering with interferon
179. Vaccinia virus immune evasion
180. Ectromelia, vaccinia and cowpox viruses encode secreted interleukin-18-binding proteins
181. A cowpox virus gene required for multiplication in Chinese hamster ovary cells
182. Sequence and analysis of a portion of the genomes of Shope fibroma virus and malignant rabbit fibroma virus that is important for viral replication in lymphocytes
183. A poxvirus-encoded uracil DNA glycosylase is essential for virus viability
184. Vaccinia virus encodes a soluble type I interferon receptor of novel structure and broad species specificity
185. N-terminal amino acid sequences of vaccinia virus structural proteins
186. A single nucleotide substitution in the 5′-untranslated region of the vaccinia N2L gene is responsible for both α-amanitin-resistant and temperature-sensitive phenotypes
187. Nucleotide sequence and molecular genetic analysis of the vaccinia virus HindIII N/M region encoding the genes responsible for resistance to α-amanitin
188. Physical mapping and DINA sequence analysis of the rifampicin resistance locus in vaccinia virus
189. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
190. Identification of CCR8: A human monocyte and thymus receptor for the CC chemokine 1-309
191. Poxvirus serpins
192. Mapping and sequencing of a gene from myxoma virus that is related to those encoding epidermal growth factor and transforming growth factor α
193. Myxoma virus and malignant rabbit fibroma virus encode a serpin-like protein important for virus virulence
194. Identification and DNA sequence of the Shope fibroma virus DNA topoisomerase gene
195. Identification and DNA sequence of the large subunit of the capping enzyme from Shope fibroma virus
196. Identification of a poxvirus gene encoding a uracil DNA glycosylase
197. Extracellular enveloped vaccinia virus is resistant to complement because of incorporation of host complement control proteins into its envelope
198. The vaccinia virus A36R protein is a type Ib membrane protein present on intracellular but not extracellular enveloped particles
199. Fine structure of the vaccinia virus gene encoding the precursor of the major core protein 4 a
200. Isolation and expression of human cytokine synthesis inhibitory factor cDNA clones: Homology to Epstein-Barr virus open reading frame BCRFI
201. A tandemly-oriented late gene cluster within the vaccinia virus genome
202. Nucleotide sequence of the vaccinia virus thymidine kinase gene and the nature of spontaneous frame-shift mutations
203. A transcriptionally controlled trans-processing assay: Putative identification of a vaccinia virus-encoded proteinase which cleaves precursor protein P25K
204. The complete genome sequence of Shope (rabbit) fibroma virus
205. Role for the vaccinia virus A36R outer envelope protein in the formation of virus-tipped actin-containing microvilli and cell-to-cell virus spread
206. Identification of human and mouse homologs of the MC51L-53L-54L family of secreted glycoproteins encoded by the molluscum contagiosum poxvirus
207. IL-18 binding and inhibition of interferon gamma induction by human poxvirus-encoded proteins
208. Kelch encodes a component of intercellular bridges in Drosophila egg chambers
209. Purification and characterization of vaccinia virus structural protein VP8
210. Oligonucleotide sequence signaling transcriptional termination of vaccinia virus early genes