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Volumn 66, Issue , 2001, Pages 249-258

Programmed +1 translational frameshifting in the yeast saccharomyces cerevisiae results from disruption of translational error correction

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RIBOSOME PROTEIN; RIBOSOME RNA; TRANSFER RNA; FUNGAL RNA; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 0035787888     PISSN: 00917451     EISSN: None     Source Type: Book Series    
DOI: 10.1101/sqb.2001.66.249     Document Type: Conference Paper
Times cited : (15)

References (62)
  • 2
    • 0025303605 scopus 로고
    • Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site
    • Belcourt M.F. and Farabaugh P.J. 1990. Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site. Cell 62: 339.
    • (1990) Cell , vol.62 , pp. 339
    • Belcourt, M.F.1    Farabaugh, P.J.2
  • 3
    • 0033942924 scopus 로고    scopus 로고
    • Nonsense-mediated decay mutants do not affect programmed -I frameshifting
    • Bidou L., Stahl G., Hatin I., Namy O., Rousset J.P., and Farabaugh P.J. 2000. Nonsense-mediated decay mutants do not affect programmed -I frameshifting. RNA 6: 952.
    • (2000) RNA , vol.6 , pp. 952
    • Bidou, L.1    Stahl, G.2    Hatin, I.3    Namy, O.4    Rousset, J.P.5    Farabaugh, P.J.6
  • 5
    • 0021956741 scopus 로고
    • Nucleotide sequence of a yeast Ty element: Evidence for an unusual mechanism of gene expression
    • Clare J. and Farabaugh P.J. 1985. Nucleotide sequence of a yeast Ty element: Evidence for an unusual mechanism of gene expression. Proc. Natl. Acad. Sci. 82: 2829.
    • (1985) Proc. Natl. Acad. Sci. , vol.82 , pp. 2829
    • Clare, J.1    Farabaugh, P.J.2
  • 6
    • 0022547355 scopus 로고
    • Expression of peptide chain release factor 2 requires high-efficiency frameshift
    • Craigen W.J. and Caskey C.T. 1986. Expression of peptide chain release factor 2 requires high-efficiency frameshift. Nature 322: 273.
    • (1986) Nature , vol.322 , pp. 273
    • Craigen, W.J.1    Caskey, C.T.2
  • 7
    • 0013936167 scopus 로고
    • Codon-anticodon pairing: The wobble hypothesis
    • Crick F.H. 1966. Codon-anticodon pairing: The wobble hypothesis. J. Mol. Biol. 19: 548.
    • (1966) J. Mol. Biol. , vol.19 , pp. 548
    • Crick, F.H.1
  • 8
    • 0027310470 scopus 로고
    • Analysis of effects of tRNA: Message stability on frameshift frequency at the Escherichia coli RF2 programmed frameshift site
    • Curran J.F. 1993. Analysis of effects of tRNA: message stability on frameshift frequency at the Escherichia coli RF2 programmed frameshift site. Nucleic Acids Res. 21: 1837.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 1837
    • Curran, J.F.1
  • 9
    • 0028899217 scopus 로고
    • Decoding with the A:I wobble pair is inefficient
    • -. 1995. Decoding with the A:I wobble pair is inefficient. Nucleic Acids Res. 23: 683.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 683
  • 10
    • 0001931483 scopus 로고
    • Protein biosynthesis and assembly
    • ed. R. Weiss et al. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
    • Dickson C., Eisenman R., Fan H., Hunter E., and Teich N. 1984. Protein biosynthesis and assembly. In RNA tumor viruses I/Text (ed. R. Weiss et al.), p. 527. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
    • (1984) RNA Tumor Viruses I/Text , pp. 527
    • Dickson, C.1    Eisenman, R.2    Fan, H.3    Hunter, E.4    Teich, N.5
  • 11
    • 0029096626 scopus 로고
    • Ribosomal frameshifting in yeast viruses
    • Dinman J.D. 1995. Ribosomal frameshifting in yeast viruses. Yeast 11: 1115.
    • (1995) Yeast , vol.11 , pp. 1115
    • Dinman, J.D.1
  • 12
  • 13
    • 0025077227 scopus 로고
    • Frameshift autoregulation in the gene for Escherichia coli release factor 2: Partly functional mutants result in frameshift enhancement
    • Donly B.C., Edgar C.D., Adamski F.M., and Tate W.P. 1990. Frameshift autoregulation in the gene for Escherichia coli release factor 2: Partly functional mutants result in frameshift enhancement. Nucleic Acids Res. 18: 6517.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6517
    • Donly, B.C.1    Edgar, C.D.2    Adamski, F.M.3    Tate, W.P.4
  • 14
    • 0028961136 scopus 로고
    • Post-transcriptional regulation of transposition by Ty retrotransposons of Saccharomyces cerevisiae
    • Farabaugh P. 1995. Post-transcriptional regulation of transposition by Ty retrotransposons of Saccharomyces cerevisiae. J. Biol. Chem. 270: 10361.
    • (1995) J. Biol. Chem. , vol.270 , pp. 10361
    • Farabaugh, P.1
  • 15
    • 0029870925 scopus 로고    scopus 로고
    • Programmed translational frameshifting
    • -. 1996. Programmed translational frameshifting. Microbiol. Rev. 60: 103.
    • (1996) Microbiol. Rev. , vol.60 , pp. 103
  • 16
    • 0033629418 scopus 로고    scopus 로고
    • Translational frameshifting: Implications for the mechanism of translational frame maintenance
    • -. 2000. Translational frameshifting: Implications for the mechanism of translational frame maintenance. Prog. Nucleic Acid Res. Mol. Biol. 64: 131.
    • (2000) Prog. Nucleic Acid Res. Mol. Biol. , vol.64 , pp. 131
  • 17
    • 0343665638 scopus 로고    scopus 로고
    • How translational accuracy influences reading frame maintenance
    • Farabaugh P.J. and Bjork G.R. 1999. How translational accuracy influences reading frame maintenance. EMBO J. 18: 1427.
    • (1999) EMBO J. , vol.18 , pp. 1427
    • Farabaugh, P.J.1    Bjork, G.R.2
  • 18
    • 0002880121 scopus 로고    scopus 로고
    • Programmed translational frameshifting, hopping and readthrough of termination codons
    • ed. N. Sonenberg et al. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • Farabaugh P., Qian Q., and Stahl G. 2000. Programmed translational frameshifting, hopping and readthrough of termination codons. In Translational control of gene expression (ed. N. Sonenberg et al.), p. 741. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
    • (2000) Translational Control of Gene Expression , pp. 741
    • Farabaugh, P.1    Qian, Q.2    Stahl, G.3
  • 19
    • 0027250247 scopus 로고
    • A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: Frameshifting without tRNA slippage
    • Farabaugh P.J., Zhao H., and Vimaladithan A. 1993. A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: Frameshifting without tRNA slippage. Cell 74: 93.
    • (1993) Cell , vol.74 , pp. 93
    • Farabaugh, P.J.1    Zhao, H.2    Vimaladithan, A.3
  • 20
    • 0023891579 scopus 로고
    • Expression of the gag-pol fusion protein of Moloney murine leukemia virus without gag protein does not induce virion formation or proteolytic processing
    • Felsenstein K. and Goff S. 1988. Expression of the gag-pol fusion protein of Moloney murine leukemia virus without gag protein does not induce virion formation or proteolytic processing. J. Virol. 62: 2179.
    • (1988) J. Virol. , vol.62 , pp. 2179
    • Felsenstein, K.1    Goff, S.2
  • 21
    • 0029825658 scopus 로고    scopus 로고
    • Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic
    • Fourmy D., Recht M.I., Blanchard S.C., and Puglisi J.D. 1996. Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic. Science 274: 1367.
    • (1996) Science , vol.274 , pp. 1367
    • Fourmy, D.1    Recht, M.I.2    Blanchard, S.C.3    Puglisi, J.D.4
  • 22
    • 0015223081 scopus 로고
    • Tryptophan transfer RNA as the UGA suppressor
    • Hirsh D. 1971. Tryptophan transfer RNA as the UGA suppressor. J. Mol. Biol. 58: 439.
    • (1971) J. Mol. Biol. , vol.58 , pp. 439
    • Hirsh, D.1
  • 23
    • 0000359208 scopus 로고
    • Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity
    • Hopfield J. 1974. Kinetic proofreading: A new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl. Acad. Sci. 71: 4135.
    • (1974) Proc. Natl. Acad. Sci. , vol.71 , pp. 4135
    • Hopfield, J.1
  • 24
    • 0023661368 scopus 로고
    • Mutants of elongation factor Tu promote ribosomal frameshifting and nonsense readthrough
    • Hughes D., Atkins J.F., and Thompson S. 1987. Mutants of elongation factor Tu promote ribosomal frameshifting and nonsense readthrough. EMBO J. 6: 4235.
    • (1987) EMBO J. , vol.6 , pp. 4235
    • Hughes, D.1    Atkins, J.F.2    Thompson, S.3
  • 25
    • 0025141883 scopus 로고
    • The difference in the type of codon-anticodon base pairing at the ribosomal P-site is one of the determinants of the translational rate
    • Kato M., Nishikawa K., Uritani M., Miyazaki M., and Takemura S. 1990. The difference in the type of codon-anticodon base pairing at the ribosomal P-site is one of the determinants of the translational rate. J. Biochem. 107: 242.
    • (1990) J. Biochem. , vol.107 , pp. 242
    • Kato, M.1    Nishikawa, K.2    Uritani, M.3    Miyazaki, M.4    Takemura, S.5
  • 26
    • 0027373095 scopus 로고
    • A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae
    • Kawakami K., Pande S., Faiola B., Moore D.P., Boeke J.D., Farabaugh P.J., Strathern J.N., Nakamura Y., and Garfinkel D.J. 1993. A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae. Genetics 135: 309.
    • (1993) Genetics , vol.135 , pp. 309
    • Kawakami, K.1    Pande, S.2    Faiola, B.3    Moore, D.P.4    Boeke, J.D.5    Farabaugh, P.J.6    Strathern, J.N.7    Nakamura, Y.8    Garfinkel, D.J.9
  • 27
    • 0002115816 scopus 로고
    • Reading-frame errors on ribosomes
    • ed. J.E. Celis and J.D. Smith. Academic Press, New York
    • Kurland C.G. 1979. Reading-frame errors on ribosomes. In Nonsense mutations and tRNA suppressors (ed. J.E. Celis and J.D. Smith), p. 97. Academic Press, New York.
    • (1979) Nonsense Mutations and tRNA Suppressors , pp. 97
    • Kurland, C.G.1
  • 29
    • 0345345078 scopus 로고
    • "Two out of three": An alternative method for codon reading
    • Lagerkvist U. 1978. "Two out of three": An alternative method for codon reading. Proc. Natl. Acad. Sci. 75: 1759.
    • (1978) Proc. Natl. Acad. Sci. , vol.75 , pp. 1759
    • Lagerkvist, U.1
  • 31
    • 0035256742 scopus 로고    scopus 로고
    • Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA
    • Li Z., Stahl G., and Farabaugh P.J. 2001. Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA. RNA 7: 275.
    • (2001) RNA , vol.7 , pp. 275
    • Li, Z.1    Stahl, G.2    Farabaugh, P.J.3
  • 32
    • 0030806152 scopus 로고    scopus 로고
    • A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA
    • Lodmell J.S. and Dahlberg A.E. 1997. A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA. Science 277: 1262.
    • (1997) Science , vol.277 , pp. 1262
    • Lodmell, J.S.1    Dahlberg, A.E.2
  • 34
    • 0016793283 scopus 로고
    • Kinetic amplification of enzyme discrimination
    • Ninio J. 1975. Kinetic amplification of enzyme discrimination. Biochimie 57: 587.
    • (1975) Biochimie , vol.57 , pp. 587
    • Ninio, J.1
  • 36
    • 0028936155 scopus 로고
    • Pulling the ribosome out of frame +1 at a programmed frameshift site by cognate binding of aminoacyl-tRNA
    • Pande S., Vimaladithan A., Zhao H., and Farabaugh P.J. 1995. Pulling the ribosome out of frame +1 at a programmed frameshift site by cognate binding of aminoacyl-tRNA. Mol. Cell. Biol. 15: 298.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 298
    • Pande, S.1    Vimaladithan, A.2    Zhao, H.3    Farabaugh, P.J.4
  • 37
    • 0033168212 scopus 로고    scopus 로고
    • Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome
    • Pape T., Wintermeyer W., and Rodnina M.V. 1999. Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome. EMBO J. 18: 3800.
    • (1999) EMBO J. , vol.18 , pp. 3800
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 38
    • 0033961143 scopus 로고    scopus 로고
    • Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome
    • -. 2000. Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome. Nat. Struct. Biol. 7: 104.
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 104
  • 39
    • 0026018243 scopus 로고
    • Overexpression of the gag-pol precursor from human immunodeficiency virus type 1 proviral genomes results in efficient proteolytic processing in the absence of virion production
    • Park J. and Morrow C.D. 1992. Overexpression of the gag-pol precursor from human immunodeficiency virus type 1 proviral genomes results in efficient proteolytic processing in the absence of virion production, J. Virol. 65: 5111.
    • (1992) J. Virol. , vol.65 , pp. 5111
    • Park, J.1    Morrow, C.D.2
  • 40
    • 0024722501 scopus 로고
    • Errors and alternatives in reading the universal genetic code
    • Parker J. 1989. Errors and alternatives in reading the universal genetic code. Microbiol. Rev. 53: 273.
    • (1989) Microbiol. Rev. , vol.53 , pp. 273
    • Parker, J.1
  • 41
    • 17444449538 scopus 로고    scopus 로고
    • Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
    • Percudani R., Pavesi A., and Ottonello S. 1997. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J. Mol. Biol. 268: 322.
    • (1997) J. Mol. Biol. , vol.268 , pp. 322
    • Percudani, R.1    Pavesi, A.2    Ottonello, S.3
  • 42
    • 0028157659 scopus 로고
    • The 530 loop of 16S rRNA: A signal to EF-Tu?
    • Powers T. and Noller H.F. 1994. The 530 loop of 16S rRNA: A signal to EF-Tu? Trends Genet. 10: 27.
    • (1994) Trends Genet. , vol.10 , pp. 27
    • Powers, T.1    Noller, H.F.2
  • 43
    • 0032015813 scopus 로고    scopus 로고
    • A new model for phenotypic suppression of frameshift mutations by mutant tRNAs
    • Qian Q., Li J.N., Zhao H., Hagervall T.G., Farabaugh P.J., and Bjork G.R. 1998. A new model for phenotypic suppression of frameshift mutations by mutant tRNAs. Mol. Cell 1: 471.
    • (1998) Mol. Cell , vol.1 , pp. 471
    • Qian, Q.1    Li, J.N.2    Zhao, H.3    Hagervall, T.G.4    Farabaugh, P.J.5    Bjork, G.R.6
  • 44
    • 0019410666 scopus 로고
    • Frameshift suppression
    • Roth J.R. 1981. Frameshift suppression. Cell 24: 601.
    • (1981) Cell , vol.24 , pp. 601
    • Roth, J.R.1
  • 45
    • 0024229383 scopus 로고
    • Mutations in elongation factor EF-1α affect the frequency of frameshifting and amino acid misincorporation in Saccharomyces cerevisiae
    • Sandbaken M.G. and Culbertson M.R. 1988. Mutations in elongation factor EF-1α affect the frequency of frameshifting and amino acid misincorporation in Saccharomyces cerevisiae. Genetics 120: 923.
    • (1988) Genetics , vol.120 , pp. 923
    • Sandbaken, M.G.1    Culbertson, M.R.2
  • 46
    • 0024596022 scopus 로고
    • Transfer RNA structure and coding specificity. I. Evidence that a D-arm mutation reduces tRNA dissociation from the ribosome
    • Smith D. and Yarus M. 1989a. Transfer RNA structure and coding specificity. I. Evidence that a D-arm mutation reduces tRNA dissociation from the ribosome. J. Mol. Biol. 206: 489.
    • (1989) J. Mol. Biol. , vol.206 , pp. 489
    • Smith, D.1    Yarus, M.2
  • 47
    • 0024589568 scopus 로고
    • Transfer RNA structure and coding specificity. II. A D-arm tertiary interaction that restricts coding range
    • -. 1989b. Transfer RNA structure and coding specificity. II. A D-arm tertiary interaction that restricts coding range. J. Mol. Biol. 206: 503.
    • (1989) J. Mol. Biol. , vol.206 , pp. 503
  • 48
    • 0026409389 scopus 로고
    • Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate
    • Sorensen M.A. and Pedersen S. 1991. Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate. J. Mol. Biol. 222: 265.
    • (1991) J. Mol. Biol. , vol.222 , pp. 265
    • Sorensen, M.A.1    Pedersen, S.2
  • 49
    • 0024405193 scopus 로고
    • Codon usage determines translation rate in Escherichia coli
    • Sorensen M.A., Kurland C.G., and Pedersen S. 1989. Codon usage determines translation rate in Escherichia coli. J. Mol. Biol. 207: 365.
    • (1989) J. Mol. Biol. , vol.207 , pp. 365
    • Sorensen, M.A.1    Kurland, C.G.2    Pedersen, S.3
  • 51
    • 0033380022 scopus 로고    scopus 로고
    • Near-cognate peptidyl-tRNAs promote +1 programmed translational frameshifting in yeast
    • Sundararajan A., Michaud W.A., Qian Q., Stahl G., and Farabaugh P.J. 1999. Near-cognate peptidyl-tRNAs promote +1 programmed translational frameshifting in yeast. Mol. Cell 4: 1005.
    • (1999) Mol. Cell , vol.4 , pp. 1005
    • Sundararajan, A.1    Michaud, W.A.2    Qian, Q.3    Stahl, G.4    Farabaugh, P.J.5
  • 52
    • 0026608933 scopus 로고
    • Translational termination: "Stop" for protein synthesis or "pause" for regulation of gene expression
    • Tate W.P. and Brown C.M. 1992. Translational termination: "Stop" for protein synthesis or "pause" for regulation of gene expression. Biochemistry 31: 2443.
    • (1992) Biochemistry , vol.31 , pp. 2443
    • Tate, W.P.1    Brown, C.M.2
  • 53
    • 0025086640 scopus 로고
    • RNA pseudoknots: Translational frameshifting and readthrough of viral RNAs
    • ten Dam E., Pleij C., and Bosch L. 1990. RNA pseudoknots: Translational frameshifting and readthrough of viral RNAs. Virus Genes 4: 121.
    • (1990) Virus Genes , vol.4 , pp. 121
    • Ten Dam, E.1    Pleij, C.2    Bosch, L.3
  • 54
    • 0023977682 scopus 로고
    • EFTu provides an internal kinetic standard for translational accuracy
    • Thompson R. 1988. EFTu provides an internal kinetic standard for translational accuracy. Trends Biochem. Sci. 13: 91.
    • (1988) Trends Biochem. Sci. , vol.13 , pp. 91
    • Thompson, R.1
  • 56
    • 0034886697 scopus 로고    scopus 로고
    • Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site
    • Vicens Q. and Westhof E. 2001. Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site. Structure 9: 647.
    • (2001) Structure , vol.9 , pp. 647
    • Vicens, Q.1    Westhof, E.2
  • 57
    • 0024368831 scopus 로고
    • Translational frameshifts induced by mutant species of the polypeptide chain elongation factor Tu of Escherichia coli
    • Vijgenboom E. and Bosch L. 1989. Translational frameshifts induced by mutant species of the polypeptide chain elongation factor Tu of Escherichia coli. J. Biol. Chem. 264: 13012.
    • (1989) J. Biol. Chem. , vol.264 , pp. 13012
    • Vijgenboom, E.1    Bosch, L.2
  • 58
    • 0028073194 scopus 로고
    • Special peptidyl-tRNA molecules promote translational frameshifting without slippage
    • Vimaladithan A. and Farabaugh P.J. 1994. Special peptidyl-tRNA molecules promote translational frameshifting without slippage. Mol. Cell. Biol. 14: 8107.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 8107
    • Vimaladithan, A.1    Farabaugh, P.J.2
  • 60
    • 0025119819 scopus 로고
    • Host genes that influence transposition in yeast: The abundance of a rare tRNA regulates Ty1 transposition frequency
    • Xu H. and Boeke J.D. 1990. Host genes that influence transposition in yeast: The abundance of a rare tRNA regulates Ty1 transposition frequency. Proc. Natl. Acad. Sci. 87: 8360.
    • (1990) Proc. Natl. Acad. Sci. , vol.87 , pp. 8360
    • Xu, H.1    Boeke, J.D.2
  • 62
    • 0035958587 scopus 로고    scopus 로고
    • The path of messenger RNA through the ribosome
    • Yusupova G., Yusupov M., Cate J., and Noller H. 2001. The path of messenger RNA through the ribosome. Cell 106: 233.
    • (2001) Cell , vol.106 , pp. 233
    • Yusupova, G.1    Yusupov, M.2    Cate, J.3    Noller, H.4


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