Nonsense-mediated decay mutants do not affect programmed -1 frameshifting

RNA

Volumn 6, Issue 7, 2000, Pages 952-961

  Bidou, Laure ^a   Stahl, Guillaume ^b   Hatin, Isabelle ^a   Namy, Olivier ^a   Rousset, Jean Pierre ^a   Farabaugh, Philip J ^b  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b UNIVERSITY OF MARYLAND   (United States)

Author keywords

HIV; PSI; Recoding; Release factor; Reporter; UPF

Indexed keywords

MESSENGER RNA;

ARTICLE; GENE REPRESSION; MUTANT; PRIORITY JOURNAL; RIBOSOMAL FRAMESHIFTING; RNA SEQUENCE; RNA TRANSLATION; STOP CODON; TRANSLATION INITIATION; TRANSLATION REGULATION;

AMINO ACID SEQUENCE; BASE SEQUENCE; CODON; ESCHERICHIA COLI; FRAMESHIFT MUTATION; GENES, REPORTER; MOLECULAR SEQUENCE DATA; MUTATION; PLASMIDS; PROTEIN BIOSYNTHESIS; SACCHAROMYCES CEREVISIAE; TRANS-ACTIVATION (GENETICS);

EID: 0033942924     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838200000443     Document Type: Article

References (31)

1. Adamski FM, Donly BC, Tate WP. 1993. Competition between frameshifting, termination and suppression at the frameshift site in the Escherichia coli release factor-2 mRNA. Nucleic Acids Res 21: 5074-5078.
2. Belcourt MF, Farabaugh PJ. 1990. Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site. Cell 62:339-352.
3. Bidou L, Stahl G, Grima B, Liu H, Cassan M, Rousset JP. 1997. In vivo HIV-1 frameshifting efficiency is directly related to the stability of the stem-loop stimulatory signal. RNA 3:1153-1158.
4. Bonetti B, Fu L, Moon J, Bedwell DM. 1995. The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae. J Mol Biol 251:334-345.
5. Bonneaud N, Ozier-Kalogeropoulos O, Li G, Labouesse M, Minvielle-Sebastia L, Lacroute F. 1991. A family of low and high copy replicative, integrative and single-stranded S. cerevisiae/ E. coli shuttle vectors. Yeast 7:609-615.
6. Cui Y, Dinman JD, Peltz SW. 1996. Mof4-1 is an allele of the UPF1/ IFS2 gene which affects both mRNA turnover and -1 ribosomal frameshifting efficiency. EMBO J 15:5726-5736.
7. Czaplinski K, Ruiz-Echevarria MJ, Gonzalez CI, Peltz SW. 1999. Should we kill the messenger? The role of the surveillance complex in translation termination and mRNA turnover. Bioessays 21:685-696.
8. de Smit M, van Duin J, van Knippenberg P, van Eijk H. 1994. CCC.UGA: A new site of ribosomal frameshifting in Escherichia coli. Gene 143:43-47.
9. Donly BC, Edgar CD, Adamski FM, Tate WP. 1990. Frameshift autoregulation in the gene for Escherichia coli release factor 2: Partly functional mutants result in frameshift enhancement. Nucleic Acids Res 18:6517-6522.
10. Farabaugh PJ. 1996. Programmed translational frameshifting. Microbiol Rev 60:103-134.
11. Farabaugh P, Qian Q, Stahl G. 2000. Programmed translational frameshifting, hopping and readthrough of termination codons. In: Hershey J, Mathews M, Sonenberg N, eds. Translational control. Cold Spring Harbor, New York: Cold Spring Harbor Press. In press.
12. Farabaugh PJ, Zhao H, Vimaladithan A. 1993. A novel programed frameshift expresses the POL3 gene of retrotransposon Ty3 of yeast: Frameshifting without tRNA slippage. Cell 74:93-103.
13. Fearon K, McClendon V, Bonetti B, Bedwell DM. 1994. Premature translation termination mutations are efficiently suppressed in a highly conserved region of yeast Ste6p, a member of the ATP-binding cassette (ABC) transporter family. J Biol Chem 269: 17802-17808.
14. Gesteland R, Atkins J. 1996. Recoding: Dynamic reprogramming of translation. Annu Rev Biochem 65:741-768.
15. Ito H, Fukuda Y, Murata K, Kimura A. 1983. Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153:163-168.
16. Kawakami K, Pande S, Faiola B, Moore DP, Boeke JD, Farabaugh PJ, Strathern JN, Nakamura Y, Garfinkel DJ. 1993. A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae. Genetics 135:309-320.
17. Kurland CG. 1992. Translational accuracy and the fitness of bacteria. Annu Rev Genet 26:29-50.
18. Liebman SW, Derkatch IL. 1999. The yeast [PSI+] prion: Making sense of nonsense. J Biol Chem 274:1181-1184.
19. + determinant suppresses nonsense mutations in yeast, J Bacteriol 139:1068-1071.
20. Muhlrad D, Parker R. 1999. Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: Implications for the control of mRNA decapping. Mol Biol Cell 11:3971-3978.
21. Patino MM, Liu JJ, Glover JR, Lindquist S. 1996. Support for the prion hypothesis for inheritance of a phenotypic trait in yeast. Science 273:622-626.
22. +] determinant is mediated by oligomerization of the SUP35-encoded polypeptide chain release factor. EMBO J 15:3127-3134.
23. Peter K, Lindsley D, Peng L, Gallant JA. 1992. Context rules of rightward overlapping reading. New Biol 4:520-526.
24. Reil H, Kollmus H, Weidle UH, Hauser H. 1993. A heptanucleotide sequence mediates ribosomal frameshifting in mammalian cells. J Virol 67:5579-5584.
25. Ruiz-Echevarria MJ, Yasenchak JM, Han X, Dinman JD, Peltz SW. 1998. The upf3 protein is a component of the surveillance complex that monitors both translation and mRNA turnover and affects viral propagation. Proc Natl Acad Sci USA 95:8721-8726.
26. Stahl G, Bidou L, Rousset JP, Cassan M. 1995. Versatile vectors to study recoding: Conservation of rules between yeast and mammalian cells. Nucleic Acids Res 23:1557-1560.
27. Stansfield I, Jones KM, Kushnirov VV, Dagkesamanskaya AR, Poznyakovski AI, Paushkin SV, Nierras CR, Cox BS, Ter-Avanesyan MD, Tuite MF. 1995. The products of the SUP45 (eRF1) and SUP35 genes interact to mediate translation termination in Saccharomyces cerevisiae. EMBO J 14:4365-4373.
28. Tate WP, Poole ES, Dalphin ME, Major LL, Crawford DJ, Mannering SA. 1996. The translational stop signal: Codon with a context, or extended factor recognition element? Biochimie 78:945-952.
29. Vimaladithan A, Farabaugh PJ. 1994. Special peptidyl-tRNA molecules promote translational frameshifting without slippage. Mol Cell Biol 14:8107-8116.
30. Weiss R, Dunn D, Dahlberg A, Atkins J, Gesteland R. 1988. Reading frame switch caused by base-pair formation between the 3′ end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli. EMBO J 7:1503-1507.
31. Wickner RB. 1994. [URE3] as an altered URE2 protein: Evidence for a prion analog in Saccharomyces cerevisiae. Science 264:566-569.