DIAN: A novel algorithm for genome ontological classification

Genome Research

Volumn 11, Issue 10, 2001, Pages 1766-1779

  Pouliot, Yannick ^a   Gao, Jing ^a   Su, Qiaojuan Jane ^a   Liu, Guozhen Gordon ^a   Ling, Xuefeng Bruce ^a,b  

^a DoubleTwist Inc   (United States)

^b AMGEN INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ACCURACY; ALGORITHM; ARTICLE; ASSOCIATION; BIOLOGY; CLASSIFICATION; DATA BASE; GENE; GENE FUNCTION; GENE MAPPING; GENE SEQUENCE; GENOME; HUMAN; HUMAN GENETICS; METHODOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; SCIENCE; SIGNAL TRANSDUCTION; STATISTICAL ANALYSIS;

ALGORITHMS; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; GENOME, HUMAN; HUMANS; PROTEIN STRUCTURE, TERTIARY; PROTEINS;

EID: 0034756358     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.183301     Document Type: Article

References (39)

1. Gene ontology: Tool for the unification of biology
2. The Babel of bioinformatics
3. The PRINTS database of protein fingerprints: A novel information resource for computational molecular biology
4. PROSITE: A dictionary of site and patterns in proteins
5. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
6. An ontology for bioinformatics applications
7. Wasp, the Drosophila Wiskott-Aldrich syndrome gene homologue, is required for cell fate decisions mediated by Notch signaling
8. Using GeneWise in the Drosophila annotation experiment
9. The Mouse Genome Database (MGD): Expanding genetic and genomic resources for the laboratory mouse
10. A method to identify protein sequences that fold into a known three-dimensional structure
11. Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
12. Prediction of complete gene structures in human genomic DNA
13. RIBOWEB: Linking structural computations to a knowledge base of published experimental data
14. Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure
15. Enzyme nomenclature; recommendations of the Commission on Biochemical Nomenclature on the nomenclature and classification of enzymes together with their units and the symbols of enzyme kinetics
16. The ProDom database of protein domain families
17. Isolation of a novel gene mutated in Wiskott-Aldrich syndrome
18. Automated protein sequence database classification. II. Delineation of domain boundaries from sequence similarities
19. Algorithms on strings, trees, and sequences: Computer science and computational biology
20. Blocks+: A non-redundant database of protein alignment blocks derived from multiple compilations
21. The PROSITE database, its status in 1999
22. Enzyme nomenclature; recommendations, 1964, of the International Union of Biochemistry on the nomenclature and classification of enzymes, together with their units and the symbols of enzyme kinetics
23. Enzyme nomenclature, 1978: Recommendations of the Nomenclature Committee of the International Union of Biochemistry of the nomenclature and classification of enzymes
24. Enzyme nomenclature, 1978: Recommendations of the Nomenclature Committee of the International Union of Biochemistry on the nomenclature and classification of enzymes
25. Enzyme nomenclature 1984: Recommendations of the Nomenclature Committee of the International Union of Biochemistry on the nomenclature and classification of enzyme-catalysed reactions
26. Enzyme nomenclature 1992: Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzymes
27. An ontology for biological function based on molecular interactions
28. Annotating eukaryote genomes
29. SCOP: A structural classification of proteins database for the investigation of sequences and structures
30. Highly specific protein sequence motifs for genome analysis
31. KEGG: Kyoto encyclopedia of genes and genomes
32. CATH-A hierarchic classification of protein domain structures
33. Spontaneous apoptosis in lymphocytes from patients with Wiskott-Aldrich syndrome: Correlation of accelerated cell death and attenuated bcl-2 expression
34. Actin cytoskeletal function is spared, but apoptosis is increased, in WAS patient hematopoietic cells
35. Functions of the gene products of Escherichia coli
36. Identification of common molecular subsequences
37. Pfam: Multiple sequence alignments and HMM-profiles of protein domains
38. Database resources of the national center for biotechnology information
39. Fast probabilistic analysis of sequence function using scoring matrices