The PRINTS database of protein fingerprints: A novel information resource for computational molecular biology

Journal of Chemical Information and Computer Sciences

Volumn 37, Issue 3, 1997, Pages 417-424

  Attwood, T K ^a   Avison, H ^b   Beck, M E ^b   Bewley, M ^b   Bleasby, A J ^c   Brewster, F ^a   Cooper, P ^b   Degtyarenko, K ^b   Geddes, A J ^b   Flower, D R ^d   Kelly, M P ^b   Lott, S ^b   Measures, K M ^b   Parry Smith, D J ^e   Perkins, D N ^b   Scordis, P ^a   Scott, D ^b   Worledge, C ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY OF LEEDS   (United Kingdom)

^c DARESBURY LABORATORY   (United Kingdom)

^d ASTRAZENECA   (United Kingdom)

^e PFIZER GLOBAL RESEARCH AND DEVELOPMENT   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMISTRY; COMPUTER NETWORK; FACTUAL DATABASE; GENETICS; HUMAN; MOLECULAR BIOLOGY; MOLECULAR GENETICS; PEPTIDE MAPPING; PRION;

AMINO ACID SEQUENCE; ANIMALS; COMPUTER COMMUNICATION NETWORKS; DATABASES, FACTUAL; HUMANS; MOLECULAR BIOLOGY; MOLECULAR SEQUENCE DATA; PEPTIDE MAPPING; PRIONS; PROTEINS;

EID: 0031133736     PISSN: 00952338     EISSN: None     Source Type: Journal    
DOI: 10.1021/ci960468e     Document Type: Article

References (27)

1. Bairoch, A.; Apweiler, R. The Swiss-Prot Protein-Sequence Bata-Bank and Its New Supplement TREMBL. Nucleic Acids Res. 1996, 24 21-25.
2. George, D. G.; Barker, W. C.; Mewes, H.-W.; Pfeiffer, F.; Tsugita, A. The PIR-International Protein-Sequence Database. Nucleic Acids Res. 1996, 24, 17-20.
3. Benson, D.; Boguski, M.; Lipman, D. J.; Ostell, J. GenBank. Nucleic Acids Res. 1996, 24, 1-5.
4. Fickett, J. W. Correct Transmission of Protein Coding Regions in GenBank. Trends Biochem. Sci. 1986, 11, 190.
5. Gish, W. National Center for Biotechnology Information server 1994.
6. George, D. G.; Barker, W. C.; Mewes, H. W.; Pfeiffer, F.; Tsugita, A., The PIR-International Databases. Nucleic Acids Res. 1993, 21 3089-3092.
7. Bleasby, A. J.; Akrigg, D.; Attwood, T. K. A Nonredundant Composite Protein-Sequence Database. Nucleic Acids Res. 1994, 22, 3574-3577.
8. Altschul, S. F.; Gish, W.; Miller, W.; Myers, E. W.; Lipman, D. Basic Local Alignment Search Tool. J. Mol. Biol. 1990, 215, 403-410.
9. Altschul, S. F.; Boguski, M. S.; Gish, W.; Wootton, J. C. Issues In Searching Molecular Sequence Databases. Nature Genetics 1994, 6, 119-129.
10. Doolittle, R. F. Proteins. Sci. Am. 1985, 253, 88-99.
11. Bairoch, A.; Bucher, P.; Hofmann, K. The PROSITE Database, Its Status in 1995. Nucleic Acids Res. 1996, 24, 189-196.
12. Pietrokovski, S.; Henikoff, S.; Henikoff, J. G. Automated Assembly of Protein Blocks for Database Searching. Nucleic Acids Res. 1996, 24, 197-200.
13. Sonnhammer, E. L. L.; Kahn, D. Modular Arrangement of Proteins as Inferred from Analysis of Homology. Protein Science 1994, 3, 482-492.
14. Parry-Smith, D. J.; Attwood, T. K. ADSP - A New Package for Computational Sequence-Analysis. CABIOS 1992, 8(5), 451-459.
15. Attwood, T. K.; Findlay, J. B. C. Fingerprinting G-Protein-Coupled Receptors. Protein Eng. 1994, 7(2), 195-203.
16. Attwood, T. K.; Beck, M. E.; Bleasby, A. J.; Degtyarenko, K.; Parry-Smith, D. J. Progress with the Prints Protein Fingerprint Database. Nucleic Acids Res. 1996, 24(1), 182-188.
17. Parry-Smith, D. J.; Attwood, T. K. SOMAP - A Novel Interactive Approach to Multiple Protein Sequences Alignment. CABIOS 1991, 7(2), 233-235.
18. Pattabiraman, N.; Namboodiri, K.; Lowrey, A.; Gaber, B. P. NRL-3D-A Sequence-Structure Database. Protein Seq. Data Anal. 1990, 3, 387-405.
19. Murzin, A. G.; Brenner, S. E.; Hubbard, T.; Chothia, C. SCOP - A Structural Classification of Proteins Database for the Investigation of Sequences and Structures. J. Mol. Biol. 1995, 247, 536-540.
20. Murvai, J.; Gabrielian, A.; Fabian, P.; Hatsagi, Z.; Degtyarenko, K.; Hegyi, H.; Pongor, S. The SBASE Protein Domain Library, Release 3.0-A Collection of Annotated Protein-Sequence Segments. Nucleic Acids Res. 1996, 24, 210-213.
21. Akrigg, D.; Attwood, T. K.; Bleasby, A. J.; Findlay, J. B. C.; Maughan, N. A.; North, A. C. T.; Parry-Smith, D. J.; Perkins, D. N.; Wootton, J. C. SERPENT - An Information-Storage and Analysis Resource for Protein Sequences. CABIOS 1992, 8, 295-296.
22. Michie, A. D.; Jones, M. L.; Attwood, T. K. DBBROWSER - Integrated Access to Databases Worldwide. TiBS 1996, 21, 191.
23. Kolakowski, L. F. GCRDB - A G-Protein-Coupled Receptor Database. Receptors and Channels 1994, 2, 1-7.
24. Flower, D. R.; North, A. C. T.; Attwood, T. K. Structure and Sequence Relationships in the Lipocalins and Related Proteins. Protein Science 1993, 2, 753-761.
25. Flower, D. R.; North, A. C. T.; Attwood, T. K. Mouse Oncogene Protein-24P3 Is a Member of the Lipocalin Protein Family. BBRC 1991, 180, 69-74.
26. Boguski, M.; Bairoch, A.: Attwood. T. K.; Michaels, G. S. PROTOVAV and Gene-Expression. Nature 1992, 358, 113.
27. Attwood, T. K.; Findlay, J. B. C. Design of a Discriminating Fingerprint for G-Protein-Coupled Receptors. Protein Eng. 1993, 6, 167-176.