Extensive central disruption of a four-way junction on binding CCE1 resolving enzyme

Journal of Molecular Biology

Volumn 296, Issue 2, 2000, Pages 421-433

  Déclais, Anne Cécile ^a   Lilley, David M J ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

2 Aminopurine; DNA structure; Fluorescence; Holliday junction; Recombination

Indexed keywords

2 AMINOPURINE; ADENINE; DNA; NUCLEASE; PERMANGANATE POTASSIUM;

ARTICLE; BASE PAIRING; DNA STRAND; DNA STRUCTURE; GENE DISRUPTION; GENE SEQUENCE; GENETIC RECOMBINATION; HOLLIDAY JUNCTION; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

SACCHAROMYCES CEREVISIAE;

EID: 0034681277     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.3479     Document Type: Article

References (63)

1. Targeted base stacking disruption by the EcoRI DNA methyltransferase
2. Direct real time observation of base flipping by the EcoRI DNA methyltransferase
3. Deoxynucleoside phosphoramidites - A new class of key intermediates for deoxypolynucleotide synthesis
4. 2+ binding properties of bacteriophage T4 DNA polymerase
5. Structural analysis of the RuvC-Holliday junction complex reveals an unfolded junction
6. Kinetic mechanism of DNA binding and DNA-induced dimerization of the Escherichia coli Rep helicase
7. Influence of 5'-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment
8. Branched DNA molecules: Intermediates in T4 recombination
9. The solution structure of the four-way DNA junction at low salt concentration; a fluorescence resonance energy transfer analysis
10. Resolution of Holliday junctions in vitro requires the Escherichia coli ruvC gene product
11. Enzymes and the sites of genetic recombination: Studies with gene-3 endonuclease of phage T7 and with site-affinity mutants of phage λ
12. The structure of the Holliday junction and its resolution
13. The role of metal ions in the conformation of the four-way junction
14. Binding of the junction-resolving enzyme bacteriophage T7 endonuclease I to DNA: Separation of binding and catalysis by mutation
15. Resolution of synthetic Holliday junctions in DNA by an endonuclease from calf thymus
16. Equilibrium and kinetic parameters of the sequence-specific interaction of Escherichia coli RNA polymerase with nontemplate strand oligo-deoxyribonucleotides
17. The nucleotide analog 2-aminopurine as a spectroscopic probe of nucleotide incorporation by the Klenow fragment of Escherichia coli polymerase I and bacteriophage T4 DNA polymerase
18. Structural recognition and distortion by the DNA junction-resolving enzyme RusA
19. Structure of the Holliday junction intermediate in Cre-loxP site-specific recombination
20. Crystal structure of E. coli RuvA with bound DNA Holliday junction at 6 Å resolution
21. Melting of a DNA helix terminus within th active site of a DNA polymerase
22. A mechanism for gene conversion in fungi
23. 2-Aminopurine as a fluorescent probe for DNA base flipping by methyltransferases
24. Resolution of recombination intermediates by a mammalian activity functionally analogous to Escherichia coli RuvC resolvase
25. Escherichia coli RuvC protein is an endonuclease that resolves the Holliday structure
26. Chemical probes of DNA conformation: Detection of Z-DNA at nucleotide resolution
27. Electron transfer between bases in double helical DNA
28. Studies on T4 head maturation. 1. Purification and characterisation of gene-49-controlled endonuclease
29. HhaI methyltransferase flips its target base out of the DNA helix
30. Spectroscopic and calorimetric characterizations of DNA duplexes containing 2-aminopurine
31. The supercoil-stabilised cruciform of ColE1 is hyper-reactive to osmium tetroxide
32. Sequencing end-labelled DNA with base-specific chemical cleavages
33. (A-T)(n), tracts embedded in random sequence DNA - Formation of a structure which is chemically reactive and torsionally deformable
34. The role of base flipping in damage recognition and catalysis by T4 endonuclease V
35. A pivotal role for the structure of the Holliday junction in DNA branch migration
36. Structure of a multisubunit complex that promotes DNA branch migration
37. T4 endonuclease VII selects and alters the structure of the four-way DNA junction; binding of a resolution-defective mutant enzyme
38. On the mechanism of genetic recombination: Electron microscopic observation of recombination intermediates
39. A fluorescence-based assay for monitoring helicase activity
40. The crystal structure of HaeIII methyl-transferase covalently complexed to DNA: An extrahelical cytosine and rearranged base pairing
41. Crystal structure of an octameric RuvA-Holliday junction complex
42. 4 as a probe for lac promoter DNA melting and mechanism in vivo
43. Dissection of the sequence specificity of the Holliday junction endonuclease CCE1
44. Identification of double Holliday junctions as intermediates in meiotic recombination
45. Resolution of Holliday junctions in E. coli: Identification of the ruvC gene product as a 19 kDa protein
46. Processing of intermediates in recombination and DNA repair: Identification of a new endonuclease that specifically cleaves Holliday junctions
47. Polymer support oligonucleotide synthesis. XVIII. Use of β-cyanoethyl-N,N-dialkylamino/N-morpholino phosphoramidite of deoxynucleosides for the synthesis of DNA fragments simplifying deprotection and isolation of the final product
48. A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
49. 2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: Metal-ion and base sequence effects
50. Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase
51. Spectroscopic determination of open complex formation at promoters for Escherichia coli RNA polymerase
52. Partial purification of an endonuclease from Saccharomyces cerevisiae that cleaves Holliday junctions
53. Thermodynamic and kinetic measurements of promoter binding by T7 RNA polymerase
54. Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: Structural basis for damaged DNA recognition
55. Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside and their derivatives
56. Cleavage of cruciform DNA structures by an activity from Saccharomyces cerevisiae
57. The structure-selectivity and sequence-preference of the junction-resolving enzyme CCE1 of Saccharomyces cerevisiae
58. Characterization of a Holliday junction resolving enzyme from Schizosaccharomyces pombe
59. The resolving enzyme CCE1 of yeast opens the structure of the four-way DNA junction
60. Interaction of the resolving enzyme YDC2 with the four-way DNA junction
61. Recognition and manipulation of branched DNA structure by junction-resolving enzymes
62. Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption
63. Coordinated actions of RuvABC in Holliday junction processing