Spectroscopic determination of open complex formation at promoters for Escherichia coli RNA polymerase

Biochemistry

Volumn 36, Issue 26, 1997, Pages 8005-8012

  Sullivan, Jennifer J ^a   Bjornson, Keith P ^b   Sowers, Lawrence C ^c   DeHaseth, Pieter L ^a  

^a CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE;

AMINO ACID SUBSTITUTION; ARTICLE; BACTERIOPHAGE; BASE PAIRING; COMPLEX FORMATION; CONFORMATIONAL TRANSITION; DNA TEMPLATE; ENZYME ANALYSIS; ESCHERICHIA COLI; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; RNA SYNTHESIS; SPECTROSCOPY; TRANSCRIPTION INITIATION;

2-AMINOPURINE; BACTERIAL PROTEINS; BASE SEQUENCE; DNA, BACTERIAL; DNA-DIRECTED DNA POLYMERASE; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; FLUORESCENCE; FLUOROMETRY; KINETICS; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS);

ESCHERICHIA COLI;

EID: 0030745622     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi970363k     Document Type: Article

References (39)

1. Record, M. T., Jr., Reznikoff, W. S., Craig, M. L., McQuade, K. L., and Schlax, P. J. (1996) in Escherichia coli and Salmonella, cellular and molecular biology Neidhardt, F. C., Ed.) pp 792-820, ASM Press, Washington, DC.
2. Sowers, L. C., Fazakerley, G. V., Eritja, R., Kaplan, B. E., and Goodman, M. F. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 5434-5438.
3. Nordlund, T. M., Anderson, S., Nilsson, L., Rigler, R., Graslund, A., and McLaughlin, L. W. (1989) Biochemistry 28, 9095-9103.
4. Wu, P., and Nordlund, T. M. (1990) Biochemistry 29, 6508-6514.
5. Law, S. M., Eritja, R., Goodman, M. F., and Breslauer, K. J. (1996) Biochemistry 35, 12329-12337.
6. McLaughlin, L. W., Benseler, F., Graeser, E., Piel, N., and Scholtissek, S. (1987) Biochemistry 26, 7238-7245.
7. Ward, D. C., Reich, E., and Stryer, L. (1969) J. Biol. Chem. 244, 1228-1237.
8. Guest, C. R., Hochstrasser, R. A., Sowers, L. C., and Millar, D. P. (1991) Biochemistry 30, 3271-3279.
9. Raney, K. D., Sowers, L. C., Millar, D. P., and Benkovic, S. J. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 6644-6648.
10. McClure, W. R. (1985) Annu. Rev. Biochem. 54, 171-204.
11. Rao, L., Ross, W., Appleman, J. A., Gaal, T., Leirmo, S., Schlax, P. J., Record, M. T., Jr., and Gourse, R. L. (1994) J. Mol. Biol. 235, 1421-1435.
12. Tang, Y., Murakami, K., Ishihama, A., and deHaseth, P. L. (1996) J. Bacteriol. 178, 6945-6951.
13. Dunkak, K. S., Otto, M. R., and Beechem, J. M. (1996) Anal. Biochem. 343, 234-244.
14. Jia, Y., Kumar, A., and Patel, S. S. (1996) J. Biol. Chem. 271, 30451-30458.
15. Sastry, S. S., and Ross, B. M. (1996) Biochemistry 35, 15715-15725.
16. Ujvari, A., and Martin, C. T. (1996) Biochemistry 35, 14574-14582.
17. Burgess, R. R., and Jendrisak, J. J. (1975) Biochemistry 14, 4634-4638.
18. Gonzales, N., Wiggs, J., and Chamberlin, M. J. (1977) Arch. Biochem. Biophys. 182, 404-408.
19. Fujimoto, J., Nuesca, Z., Mazurek, M., and Sowers, L. C. (1996) Nucleic Acids Res. 24, 754-759.
20. deHaseth, P. L., Goldman, R. A., Cech, C. L., and Caruthers, M. H. (1983) Nucleic Acids Res. 11, 773-787.
21. Mita, B. C., Tang, Y., and deHaseth, P. L. (1995) J. Biol. Chem. 270, 30428-30433.
22. Aiyar, S. E., Helmann, J. D., and deHaseth, P. L. (1994) J. Biol. Chem. 269, 13179-13184.
23. Szoke, P. A., Allen, T. A., and deHaseth, P. L. (1987) Biochemistry 26, 6188-6194.
24. Melançon, P., Burgess, R. R., and Record, M. T., Jr. (1983) Biochemistry 22, 5169-5176.
25. Sasse-Dwight, S., and Gralla, J. D. (1989) J. Biol. Chem. 264, 8074-8081.
26. Nudler, E., Avetissova, E., Markovtsov, V., and Goldfarb, A. (1996) Science 273, 211-217.
27. Kovacic, R. T. (1987) J. Biol. Chem. 262, 13654-13661.
28. McClure, W. R. (1980) Proc. Natl. Acad. Sci. U.S.A. 77, 5634-5638.
29. Hershberger, P. A., Mita, B. C., Tripatara, A., and deHaseth, P. L. (1993) J. Biol. Chem. 268, 8943-8948.
30. Roe, J. H., Burgess, R. R., and Record, M. T. (1985) J. Mol. Biol. 184, 441-453.
31. Strauss, H. S., Burgess, R. R., and Record, M. T., Jr. (1980) Biochemistry 19, 3504-3515.
32. Buc, H., and McClure, W. R. (1985) Biochemistry 24, 2712-2723.
33. Suh, W. C., Leirmo, S., and Record, M. T., Jr. (1992) Biochemistry 31, 7815-7825.
34. Hawley, D., and McClure, W. R. (1982) J. Mol. Biol. 157, 493-525.
35. Auble, D. T. (1987) Ph.D. Thesis, Case Western Reserve University, Cleveland, OH.
36. Ellinger, T., Behnke, D., Bujard, H., and Gralla, J. D. (1994) J. Mol. Biol. 239, 455-465.
37. Smith, T. L., and Sauer, R. T. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 8868-8872.
38. Schmitt, B., and Reiss, C. (1995) Biochem. J. 306, 123-128.
39. Hsu, L. M., Vo, N. M., and Chamberlin, M. C. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 11588-11592.