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Volumn 269, Issue 5, 1997, Pages 647-664

Recognition and manipulation of branched DNA structure by junction-resolving enzymes

Author keywords

DNA structure; DNA protein interaction; Nucleases; Recombination

Indexed keywords

DNA; METAL ION; MUTANT PROTEIN; NUCLEASE;

EID: 0031588022     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.1097     Document Type: Review
Times cited : (95)

References (158)
  • 1
    • 0028970354 scopus 로고
    • Unwinding of closed circular DNA by the Escherichia coli RuvA and RuvB recombination/repair proteins
    • Adams D. E., West S. C. Unwinding of closed circular DNA by the Escherichia coli RuvA and RuvB recombination/repair proteins. J. Mol. Biol. 247:1995;404-417.
    • (1995) J. Mol. Biol. , vol.247 , pp. 404-417
    • Adams, D.E.1    West, S.C.2
  • 2
    • 0031051010 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae MSH2, a mispaired base recognition protein, also recognizes Holliday junctions in DNA
    • Alani E., Lee S., Kane M. F., Griffith J., Kolodner R. D. Saccharomyces cerevisiae MSH2, a mispaired base recognition protein, also recognizes Holliday junctions in DNA. J. Mol. Biol. 265:1997;289-301.
    • (1997) J. Mol. Biol. , vol.265 , pp. 289-301
    • Alani, E.1    Lee, S.2    Kane, M.F.3    Griffith, J.4    Kolodner, R.D.5
  • 3
    • 0023322945 scopus 로고
    • Identification of the HPV-16 E6 protein from transformed mouse cells and human cervical carcinoma cell lines
    • Androphy E. J., Hubbert N. L., Schiller J. T., Lowy D. R. Identification of the HPV-16 E6 protein from transformed mouse cells and human cervical carcinoma cell lines. EMBO J. 6:1987;989-992.
    • (1987) EMBO J. , vol.6 , pp. 989-992
    • Androphy, E.J.1    Hubbert, N.L.2    Schiller, J.T.3    Lowy, D.R.4
  • 5
    • 0023213453 scopus 로고
    • High-frequency homologous recombination in vaccinia virus DNA
    • Ball L. A. High-frequency homologous recombination in vaccinia virus DNA. J. Virol. 61:1987;1788-1795.
    • (1987) J. Virol. , vol.61 , pp. 1788-1795
    • Ball, L.A.1
  • 6
    • 0024100128 scopus 로고
    • Regulation of two nested proteins from gene 49 (recombination endonuclease VII) and of a λ RexA-like protein of bacteriophage T4
    • Barth K. A., Powell D., Trupin M., Mosig G. Regulation of two nested proteins from gene 49 (recombination endonuclease VII) and of a λ RexA-like protein of bacteriophage T4. Genetics. 120:1988;329-343.
    • (1988) Genetics , vol.120 , pp. 329-343
    • Barth, K.A.1    Powell, D.2    Trupin, M.3    Mosig, G.4
  • 7
    • 0024819291 scopus 로고
    • Sequence of bacteriophage T3 DNA from gene 2.5 through gene 9
    • Beck P. J., Gonzalez S., Ward C. L., Molineux I. J. Sequence of bacteriophage T3 DNA from gene 2.5 through gene 9. J. Mol. Biol. 210:1989;687-701.
    • (1989) J. Mol. Biol. , vol.210 , pp. 687-701
    • Beck, P.J.1    Gonzalez, S.2    Ward, C.L.3    Molineux, I.J.4
  • 8
    • 0026019625 scopus 로고
    • Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I. A 2 metal-ion mechanism
    • Beese L. S., Steitz T. A. Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I. A 2 metal-ion mechanism. EMBO J. 10:1991;25-33.
    • (1991) EMBO J. , vol.10 , pp. 25-33
    • Beese, L.S.1    Steitz, T.A.2
  • 9
    • 0029018205 scopus 로고
    • RuvC protein resolves Holliday junctions via cleavage of the continuous (noncrossover) strands
    • Bennett R. J., West S. C. RuvC protein resolves Holliday junctions via cleavage of the continuous (noncrossover) strands. Proc. Natl Acad. Sci. USA. 92:1995a;5635-5639.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 5635-5639
    • Bennett, R.J.1    West, S.C.2
  • 10
    • 0029087265 scopus 로고
    • Structural analysis of the RuvC-Holliday junction complex reveals an unfolded junction
    • Bennett R. J., West S. C. Structural analysis of the RuvC-Holliday junction complex reveals an unfolded junction. J. Mol. Biol. 252:1995b;213-226.
    • (1995) J. Mol. Biol. , vol.252 , pp. 213-226
    • Bennett, R.J.1    West, S.C.2
  • 11
    • 0029914126 scopus 로고    scopus 로고
    • Resolution of Holliday junctions in genetic recombination: RuvC protein nicks DNA at the point of strand exchange
    • Bennett R. J., West S. C. Resolution of Holliday junctions in genetic recombination: RuvC protein nicks DNA at the point of strand exchange. Proc. Natl Acad. Sci. USA. 93:1996;12217-12222.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 12217-12222
    • Bennett, R.J.1    West, S.C.2
  • 12
    • 0027376095 scopus 로고
    • Resolution of Holliday junctions by RuvC resolvase: Cleavage specificity and DNA distortion
    • Bennett R. J., Dunderdale H. J., West S. C. Resolution of Holliday junctions by RuvC resolvase: cleavage specificity and DNA distortion. Cell. 74:1993;1021-1031.
    • (1993) Cell , vol.74 , pp. 1021-1031
    • Bennett, R.J.1    Dunderdale, H.J.2    West, S.C.3
  • 13
    • 0028050328 scopus 로고
    • Substrate specificity of the Escherichia coli RuvC protein-resolution of three- and four-stranded recombination intermediates
    • Benson F. E., West S. C. Substrate specificity of the Escherichia coli RuvC protein-resolution of three- and four-stranded recombination intermediates. J. Biol. Chem. 269:1994;5195-5201.
    • (1994) J. Biol. Chem. , vol.269 , pp. 5195-5201
    • Benson, F.E.1    West, S.C.2
  • 14
    • 0026082134 scopus 로고
    • Evidence of abortive recombination in ruv mutants of Escherichia coli K-12
    • Benson F. E., Collier S., Lloyd R. G. Evidence of abortive recombination in ruv mutants of Escherichia coli K-12. Mol. Gen. Genet. 225:1991;266-272.
    • (1991) Mol. Gen. Genet. , vol.225 , pp. 266-272
    • Benson, F.E.1    Collier, S.2    Lloyd, R.G.3
  • 15
    • 0028270297 scopus 로고
    • Endonuclease VII of phage T4 nicks N-2-acetylaminofluorene-induced DNA structures in vitro
    • Bertrand Burggraf E., Kemper B., Fuchs R. P. P. Endonuclease VII of phage T4 nicks N-2-acetylaminofluorene-induced DNA structures in vitro. Mutat. Res. 314:1994;287-295.
    • (1994) Mutat. Res. , vol.314 , pp. 287-295
    • Bertrand Burggraf, E.1    Kemper, B.2    Fuchs, R.P.P.3
  • 16
    • 0024426629 scopus 로고
    • The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles)
    • Bhattacharyya A., Lilley D. M. J. The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles). Nucl. Acids Res. 17:1989;6821-6840.
    • (1989) Nucl. Acids Res. , vol.17 , pp. 6821-6840
    • Bhattacharyya, A.1    Lilley, D.M.J.2
  • 18
    • 0024584528 scopus 로고
    • Specific recognition of cruciform DNA by nuclear protein HMG1
    • Bianchi M. E., Beltrame M., Paonessa G. Specific recognition of cruciform DNA by nuclear protein HMG1. Science. 243:1989;1056-1059.
    • (1989) Science , vol.243 , pp. 1056-1059
    • Bianchi, M.E.1    Beltrame, M.2    Paonessa, G.3
  • 19
    • 0026609275 scopus 로고
    • HMG1 protein contains a DNA binding site composed of two similar segments, which have counterparts in other eukaryotic regulatory proteins
    • Bianchi M. E., Falciola L., Ferrari S., Lilley D. M. J. HMG1 protein contains a DNA binding site composed of two similar segments, which have counterparts in other eukaryotic regulatory proteins. EMBO J. 11:1992;1055-1063.
    • (1992) EMBO J. , vol.11 , pp. 1055-1063
    • Bianchi, M.E.1    Falciola, L.2    Ferrari, S.3    Lilley, D.M.J.4
  • 20
    • 0029880329 scopus 로고    scopus 로고
    • Sequence dependence and direct measurement of crossover isomer distribution in model Holliday junctions using NMR spectroscopy
    • Carlstrom G., Chazin W. J. Sequence dependence and direct measurement of crossover isomer distribution in model Holliday junctions using NMR spectroscopy. Biochemistry. 35:1996;3534-3544.
    • (1996) Biochemistry , vol.35 , pp. 3534-3544
    • Carlstrom, G.1    Chazin, W.J.2
  • 21
    • 0014940779 scopus 로고
    • An endonuclease induced after infection of Escherichia coli with bacteriophage T7. I. Purification and properties of the enzyme
    • Center M. S., Richardson C. C. An endonuclease induced after infection of Escherichia coli with bacteriophage T7. I. Purification and properties of the enzyme. J. Biol. Chem. 245:1970a;6285-6291.
    • (1970) J. Biol. Chem. , vol.245 , pp. 6285-6291
    • Center, M.S.1    Richardson, C.C.2
  • 22
    • 0014940838 scopus 로고
    • An endonuclease induced after infection of Escherichia coli with bacteriophage T7. II. Specificity of the enzyme toward single- and double-stranded deoxyribonucleic acid
    • Center M. S., Richardson C. C. An endonuclease induced after infection of Escherichia coli with bacteriophage T7. II. Specificity of the enzyme toward single- and double-stranded deoxyribonucleic acid. J. Biol. Chem. 245:1970b;6292-6299.
    • (1970) J. Biol. Chem. , vol.245 , pp. 6292-6299
    • Center, M.S.1    Richardson, C.C.2
  • 23
    • 0028781380 scopus 로고
    • Two-dimensional H-1 NMR studies of immobile Holliday junctions: Nonlabile proton assignments and identification of crossover isomers
    • Chen S. M., Chazin W. J. Two-dimensional H-1 NMR studies of immobile Holliday junctions: Nonlabile proton assignments and identification of crossover isomers. Biochemistry. 33:1994;11453-11459.
    • (1994) Biochemistry , vol.33 , pp. 11453-11459
    • Chen, S.M.1    Chazin, W.J.2
  • 24
    • 0027339077 scopus 로고
    • 2-Dimensional H-1 NMR studies of 32-base-pair synthetic immobile Holliday junctions-complete assignments of the labile protons and identification of the base-pairing scheme
    • Chen S. M., Heffron F., Chazin W. J. 2-Dimensional H-1 NMR studies of 32-base-pair synthetic immobile Holliday junctions-complete assignments of the labile protons and identification of the base-pairing scheme. Biochemistry. 32:1993;319-326.
    • (1993) Biochemistry , vol.32 , pp. 319-326
    • Chen, S.M.1    Heffron, F.2    Chazin, W.J.3
  • 27
    • 0026639433 scopus 로고
    • Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction
    • Clegg R. M., Murchie A. I. H., Zechel A., Carlberg C., Diekmann S., Lilley D. M. J. Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction. Biochemistry. 31:1992;4846-4856.
    • (1992) Biochemistry , vol.31 , pp. 4846-4856
    • Clegg, R.M.1    Murchie, A.I.H.2    Zechel, A.3    Carlberg, C.4    Diekmann, S.5    Lilley, D.M.J.6
  • 28
    • 0027976675 scopus 로고
    • The solution structure of the four-way DNA junction at low salt concentration; A fluorescence resonance energy transfer analysis
    • Clegg R. M., Murchie A. I. H., Zechel A., Lilley D. M. J. The solution structure of the four-way DNA junction at low salt concentration; a fluorescence resonance energy transfer analysis. Biophys. J. 66:1994;99-109.
    • (1994) Biophys. J. , vol.66 , pp. 99-109
    • Clegg, R.M.1    Murchie, A.I.H.2    Zechel, A.3    Lilley, D.M.J.4
  • 29
    • 0025052510 scopus 로고
    • Genetic recombination in Escherichia coli: Holliday junctions made by RecA protein are resolved by fractionated cell-free extracts
    • Connolly B., West S. C. Genetic recombination in Escherichia coli: Holliday junctions made by RecA protein are resolved by fractionated cell-free extracts. Proc. Natl Acad. Sci. USA. 87:1990;8476-8480.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 8476-8480
    • Connolly, B.1    West, S.C.2
  • 31
    • 0023551842 scopus 로고
    • Gel electrophoretic analysis of the geometry of a DNA four-way junction
    • Cooper J. P., Hagerman P. J. Gel electrophoretic analysis of the geometry of a DNA four-way junction. J. Mol. Biol. 198:1987;711-719.
    • (1987) J. Mol. Biol. , vol.198 , pp. 711-719
    • Cooper, J.P.1    Hagerman, P.J.2
  • 32
    • 0000231785 scopus 로고
    • Geometry of a branched DNA structure in solution
    • Cooper J. P., Hagerman P. J. Geometry of a branched DNA structure in solution. Proc. Natl Acad. Sci. USA. 86:1989;7336-7340.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 7336-7340
    • Cooper, J.P.1    Hagerman, P.J.2
  • 33
    • 0025908083 scopus 로고
    • Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase
    • Davies J. F., Hostomska Z., Hostomsky Z., Jordan S. R., Matthews D. A. Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase. Science. 252:1991;88-95.
    • (1991) Science , vol.252 , pp. 88-95
    • Davies, J.F.1    Hostomska, Z.2    Hostomsky, Z.3    Jordan, S.R.4    Matthews, D.A.5
  • 34
    • 0021646261 scopus 로고
    • Enzymes and the sites of genetic recombination: Studies with gene- 3 endonuclease of phage T7 and with site-affinity mutants of phage λ
    • de Massey B., Studier F. W., Dorgai L., Appelbaum F., Weisberg R. A. Enzymes and the sites of genetic recombination: Studies with gene- 3 endonuclease of phage T7 and with site-affinity mutants of phage λ Cold Spring Harbor Symp. Quant. Biol. 49:1984;715-726.
    • (1984) Cold Spring Harbor Symp. Quant. Biol. , vol.49 , pp. 715-726
    • De Massey, B.1    Studier, F.W.2    Dorgai, L.3    Appelbaum, F.4    Weisberg, R.A.5
  • 35
    • 0023125672 scopus 로고
    • Gene 3 endonuclease of bacteriophage T7 resolves conformationally branched structures in double-stranded DNA
    • de Massey B., Weisberg R. A., Studier F. W. Gene 3 endonuclease of bacteriophage T7 resolves conformationally branched structures in double-stranded DNA. J. Mol. Biol. 193:1987;359-376.
    • (1987) J. Mol. Biol. , vol.193 , pp. 359-376
    • De Massey, B.1    Weisberg, R.A.2    Studier, F.W.3
  • 36
    • 0023665172 scopus 로고
    • The site-specific cleavage of synthetic Holliday junction analogs and related branched structures by bacteriophage T7 endonuclease I
    • Dickie P., McFadden G., Morgan A. R. The site-specific cleavage of synthetic Holliday junction analogs and related branched structures by bacteriophage T7 endonuclease I. J. Biol. Chem. 262:1987;14826-14836.
    • (1987) J. Biol. Chem. , vol.262 , pp. 14826-14836
    • Dickie, P.1    McFadden, G.2    Morgan, A.R.3
  • 38
    • 0028953707 scopus 로고
    • Binding of the junction-resolving enzyme bacteriophage T7 endonuclease I to DNA: Separation of binding and catalysis by mutation
    • Duckett D. R., Giraud-Panis M.-E., Lilley D. M. J. Binding of the junction-resolving enzyme bacteriophage T7 endonuclease I to DNA: separation of binding and catalysis by mutation. J. Mol. Biol. 246:1995;95-107.
    • (1995) J. Mol. Biol. , vol.246 , pp. 95-107
    • Duckett, D.R.1    Giraud-Panis, M.-E.2    Lilley, D.M.J.3
  • 39
    • 0026331068 scopus 로고
    • Formation and resolution of recombination intermediates by E. coli RecA and RuvC proteins
    • Dunderdale H. J., Benson F. E., Parsons C. A., Sharples G. J., Lloyd R. G., West S. C. Formation and resolution of recombination intermediates by E. coli RecA and RuvC proteins. Nature. 354:1991;506-510.
    • (1991) Nature , vol.354 , pp. 506-510
    • Dunderdale, H.J.1    Benson, F.E.2    Parsons, C.A.3    Sharples, G.J.4    Lloyd, R.G.5    West, S.C.6
  • 40
    • 0028050325 scopus 로고
    • Cloning, overexpression, purification, and characterization of the Escherichia coli RuvC Holliday junction resolvase
    • Dunderdale H. J., Sharples G. J., Lloyd R. G., West S. C. Cloning, overexpression, purification, and characterization of the Escherichia coli RuvC Holliday junction resolvase. J. Biol. Chem. 269:1994;5187-5194.
    • (1994) J. Biol. Chem. , vol.269 , pp. 5187-5194
    • Dunderdale, H.J.1    Sharples, G.J.2    Lloyd, R.G.3    West, S.C.4
  • 41
    • 0020964297 scopus 로고
    • Complete nucleotide sequence of bacteriophage T7 DNA and the location of T7 genetic elements
    • Dunn J. J., Studier F. W. Complete nucleotide sequence of bacteriophage T7 DNA and the location of T7 genetic elements. J. Mol. Biol. 166:1983;477-535.
    • (1983) J. Mol. Biol. , vol.166 , pp. 477-535
    • Dunn, J.J.1    Studier, F.W.2
  • 42
    • 0025002866 scopus 로고
    • Resolution of synthetic Holliday junctions in DNA by an endonuclease from calf thymus
    • Elborough K. M., West S. C. Resolution of synthetic Holliday junctions in DNA by an endonuclease from calf thymus. EMBO J. 9:1990;2931-2936.
    • (1990) EMBO J. , vol.9 , pp. 2931-2936
    • Elborough, K.M.1    West, S.C.2
  • 43
    • 0024278599 scopus 로고
    • Effect of DNA structure and nucleotide sequence on Holliday junction resolution by a Saccharomyces cerevisiae endonuclease
    • Evans D. H., Kolodner R. Effect of DNA structure and nucleotide sequence on Holliday junction resolution by a Saccharomyces cerevisiae endonuclease. J. Mol. Biol. 201:1988;69-80.
    • (1988) J. Mol. Biol. , vol.201 , pp. 69-80
    • Evans, D.H.1    Kolodner, R.2
  • 45
    • 0029410817 scopus 로고
    • Structure-energy analysis of the role of metal ions in phosphodiester bond hydrolysis by DNA polymerase I
    • Fothergill M., Goodman M. F., Petruska J., Warshel A. Structure-energy analysis of the role of metal ions in phosphodiester bond hydrolysis by DNA polymerase I. J. Am. Chem. Soc. 117:1995;11619-11627.
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 11619-11627
    • Fothergill, M.1    Goodman, M.F.2    Petruska, J.3    Warshel, A.4
  • 46
    • 0028330853 scopus 로고
    • Cleavage of double-crossover molecules by T4 endonuclease VII
    • Fu T. J., Kemper B., Seeman N. C. Cleavage of double-crossover molecules by T4 endonuclease VII. Biochemistry. 33:1994;3896-3905.
    • (1994) Biochemistry , vol.33 , pp. 3896-3905
    • Fu, T.J.1    Kemper, B.2    Seeman, N.C.3
  • 47
    • 0025045470 scopus 로고
    • The secD locus of E. coli codes for two membrane proteins required for protein export
    • Gardel C., Johnson K., Jacq A., Beckwith J. The secD locus of E. coli codes for two membrane proteins required for protein export. EMBO J. 9:1990;3209-3216.
    • (1990) EMBO J. , vol.9 , pp. 3209-3216
    • Gardel, C.1    Johnson, K.2    Jacq, A.3    Beckwith, J.4
  • 49
    • 0030472767 scopus 로고    scopus 로고
    • T4 endonuclease VII: Importance of a histidine-aspartate cluster within the zinc-binding domain
    • Giraud-Panis M.-J. E., Lilley D. M. J. T4 endonuclease VII: importance of a histidine-aspartate cluster within the zinc-binding domain. J. Biol. Chem. 271:1996;33148-33155.
    • (1996) J. Biol. Chem. , vol.271 , pp. 33148-33155
    • Giraud-Panis M.-J., E.1    Lilley, D.M.J.2
  • 50
    • 0030910888 scopus 로고    scopus 로고
    • Near-simultaneous DNA cleavage by the subunits of the junction-resolving enzyme T4 endonuclease VII
    • Giraud-Panis M.-J. E., Lilley D. M. J. Near-simultaneous DNA cleavage by the subunits of the junction-resolving enzyme T4 endonuclease VII. EMBO J. 16:1997;2528-2534.
    • (1997) EMBO J. , vol.16 , pp. 2528-2534
    • Giraud-Panis M.-J., E.1    Lilley, D.M.J.2
  • 51
    • 0029163043 scopus 로고
    • The modular character of a DNA junction resolving enzyme: A zinc binding motif in T4 endonuclease VII
    • Giraud-Panis M.-J. E., Duckett D. R., Lilley D. M. J. The modular character of a DNA junction resolving enzyme: a zinc binding motif in T4 endonuclease VII. J. Mol. Biol. 252:1995;596-610.
    • (1995) J. Mol. Biol. , vol.252 , pp. 596-610
    • Giraud-Panis M.-J., E.1    Duckett, D.R.2    Lilley, D.M.J.3
  • 53
    • 0028072693 scopus 로고
    • The kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer
    • Gohlke C., Murchie A. I. H., Lilley D. M. J., Clegg R. M. The kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer. Proc. Natl Acad. Sci. USA. 91:1994;11660-11664.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 11660-11664
    • Gohlke, C.1    Murchie, A.I.H.2    Lilley, D.M.J.3    Clegg, R.M.4
  • 54
    • 0021997474 scopus 로고
    • DNA bending induced by cruciform formation
    • Gough G. W., Lilley D. M. J. DNA bending induced by cruciform formation. Nature. 313:1985;154-156.
    • (1985) Nature , vol.313 , pp. 154-156
    • Gough, G.W.1    Lilley, D.M.J.2
  • 55
    • 0024380768 scopus 로고
    • E6 protein of human papillomavirus type 18 binds zinc
    • Grossman S. R., Laimins L. A. E6 protein of human papillomavirus type 18 binds zinc. Oncogene. 4:1989;1089-1093.
    • (1989) Oncogene , vol.4 , pp. 1089-1093
    • Grossman, S.R.1    Laimins, L.A.2
  • 56
    • 0024580111 scopus 로고
    • Site-specific interaction of intercalating drugs with a branched DNA molecule
    • Guo Q., Seeman N. C., Kallenbach N. R. Site-specific interaction of intercalating drugs with a branched DNA molecule. Biochemistry. 28:1989;2355-2359.
    • (1989) Biochemistry , vol.28 , pp. 2355-2359
    • Guo, Q.1    Seeman, N.C.2    Kallenbach, N.R.3
  • 57
    • 0025056639 scopus 로고
    • Drug binding by branched DNA molecules: Analysis of chemical footprinting of intercalation into an immobile junction
    • Guo Q., Lu M., Seeman N. C., Kallenbach N. R. Drug binding by branched DNA molecules: Analysis of chemical footprinting of intercalation into an immobile junction. Biochemistry. 29:1990;570-578.
    • (1990) Biochemistry , vol.29 , pp. 570-578
    • Guo, Q.1    Lu, M.2    Seeman, N.C.3    Kallenbach, N.R.4
  • 58
    • 0027456546 scopus 로고
    • DNA sequence, structure and gene expression of mycobacteriophage L5: A phage system for mycobacterial genetics
    • Hatfull G. F., Sarkis G. J. DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics. Mol. Microbiol. 7:1993;395-405.
    • (1993) Mol. Microbiol. , vol.7 , pp. 395-405
    • Hatfull, G.F.1    Sarkis, G.J.2
  • 59
    • 0023430457 scopus 로고
    • Isolation and characterisation of intermediates in site-specific recombination
    • Hoess R., Wierzbicki A., Abremski K. Isolation and characterisation of intermediates in site-specific recombination. Proc. Natl Acad. Sci. USA. 84:1987;6840-6844.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 6840-6844
    • Hoess, R.1    Wierzbicki, A.2    Abremski, K.3
  • 60
    • 84959678845 scopus 로고
    • A mechanism for gene conversion in fungi
    • Holliday R. A mechanism for gene conversion in fungi. Genet. Res. 5:1964;282-304.
    • (1964) Genet. Res. , vol.5 , pp. 282-304
    • Holliday, R.1
  • 61
    • 0001690587 scopus 로고
    • Deletions of bases in one strand of duplex DNA, in contrast to single-base mismatches, produce highly kinked molecules: Possible relevance to the folding of single-stranded nucleic acids
    • Hsieh C.-H., Griffith J. D. Deletions of bases in one strand of duplex DNA, in contrast to single-base mismatches, produce highly kinked molecules: possible relevance to the folding of single-stranded nucleic acids. Proc. Natl Acad. Sci. USA. 86:1989;4833-4837.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 4833-4837
    • Hsieh, C.-H.1    Griffith, J.D.2
  • 62
    • 0028111937 scopus 로고
    • Resolution of recombination intermediates by a mammalian activity functionally analogous to Escherichia coli RuvC resolvase
    • Hyde H., Davies A. A., Benson F. E., West S. C. Resolution of recombination intermediates by a mammalian activity functionally analogous to Escherichia coli RuvC resolvase. J. Biol. Chem. 269:1994;5202-5209.
    • (1994) J. Biol. Chem. , vol.269 , pp. 5202-5209
    • Hyde, H.1    Davies, A.A.2    Benson, F.E.3    West, S.C.4
  • 63
    • 0026064725 scopus 로고
    • Escherichia coli RuvC protein is an endonuclease that resolves the Holliday structure
    • Iwasaki H., Takahagi M., Shiba T., Nakata A., Shinagawa H. Escherichia coli RuvC protein is an endonuclease that resolves the Holliday structure. EMBO J. 10:1991;4381-4389.
    • (1991) EMBO J. , vol.10 , pp. 4381-4389
    • Iwasaki, H.1    Takahagi, M.2    Shiba, T.3    Nakata, A.4    Shinagawa, H.5
  • 64
    • 0026482604 scopus 로고
    • Escherichia coli RuvA protein and RuvB protein specifically interact with Holliday junctions and promote branch migration
    • Iwasaki H., Takahagi M., Nakata A., Shinagawa H. Escherichia coli RuvA protein and RuvB protein specifically interact with Holliday junctions and promote branch migration. Gene Dev. 6:1992;2214-2220.
    • (1992) Gene Dev. , vol.6 , pp. 2214-2220
    • Iwasaki, H.1    Takahagi, M.2    Nakata, A.3    Shinagawa, H.4
  • 65
    • 0023700277 scopus 로고
    • Holliday junctions in FLP recombination: Resolution by step-arrest mutants of FLP protein
    • Jayaram M., Crain K. L., Parsons R. L., Harshey R. M. Holliday junctions in FLP recombination: Resolution by step-arrest mutants of FLP protein. Proc. Natl Acad. Sci. USA. 85:1988;7902-7906.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 7902-7906
    • Jayaram, M.1    Crain, K.L.2    Parsons, R.L.3    Harshey, R.M.4
  • 66
    • 0022599857 scopus 로고
    • Endonuclease VII resolves Y-junctions in branched DNA in vitro
    • Jensch F., Kemper B. Endonuclease VII resolves Y-junctions in branched DNA in vitro. EMBO J. 5:1986;181-189.
    • (1986) EMBO J. , vol.5 , pp. 181-189
    • Jensch, F.1    Kemper, B.2
  • 67
    • 0023752329 scopus 로고
    • Human placental endonuclease cleaves Holliday junctions
    • Jeyaseelan R., Shanmugam G. Human placental endonuclease cleaves Holliday junctions. Biochem. Biophys. Res. Commun. 156:1988;1054-1060.
    • (1988) Biochem. Biophys. Res. Commun. , vol.156 , pp. 1054-1060
    • Jeyaseelan, R.1    Shanmugam, G.2
  • 68
    • 0026661167 scopus 로고
    • Saccharomyces cerevisiaeRAD5 -encoded DNA repair protein contains DNA helicase and zinc-binding sequence motifs and affects the stability of simple repetitive sequences in the genome
    • Johnson R. E., Henderson S. T., Petes T. D., Prakash S., Bankman M., Prakash L. Saccharomyces cerevisiaeRAD5 -encoded DNA repair protein contains DNA helicase and zinc-binding sequence motifs and affects the stability of simple repetitive sequences in the genome. Mol. Cell Biol. 12:1992;3807-3818.
    • (1992) Mol. Cell Biol. , vol.12 , pp. 3807-3818
    • Johnson, R.E.1    Henderson, S.T.2    Petes, T.D.3    Prakash, S.4    Bankman, M.5    Prakash, L.6
  • 69
    • 0024297027 scopus 로고
    • The Saccharomyces cerevisiae RAD18 gene encodes a protein that contains potential zinc finger domains for nucleic acid binding and a putative nucleotide binding sequence
    • Jones J. S., Weber S., Prakash L. The Saccharomyces cerevisiae RAD18 gene encodes a protein that contains potential zinc finger domains for nucleic acid binding and a putative nucleotide binding sequence. Nucl. Acids Res. 16:1988;7119-7131.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 7119-7131
    • Jones, J.S.1    Weber, S.2    Prakash, L.3
  • 71
    • 0017065094 scopus 로고
    • Function of gene 49 of bacteriophage T4. II. Analysis of intracellular development and the structure of very fast sedimenting DNA
    • Kemper B., Brown D. T. Function of gene 49 of bacteriophage T4. II. Analysis of intracellular development and the structure of very fast sedimenting DNA. J. Virol. 18:1976;1000-1015.
    • (1976) J. Virol. , vol.18 , pp. 1000-1015
    • Kemper, B.1    Brown, D.T.2
  • 72
    • 0019510592 scopus 로고
    • Studies on T4 head maturation. 1. Purification and characterisation of gene-49-controlled endonuclease
    • Kemper B., Garabett M. Studies on T4 head maturation. 1. Purification and characterisation of gene-49-controlled endonuclease. Eur. J. Biochem. 115:1981;123-131.
    • (1981) Eur. J. Biochem. , vol.115 , pp. 123-131
    • Kemper, B.1    Garabett, M.2
  • 73
    • 0017154015 scopus 로고
    • Function of gene 49 of bacteriophage T4. 1. Isolation and biochemical charcterisation of very fast sedimenting DNA
    • Kemper B., Janz E. Function of gene 49 of bacteriophage T4. 1. Isolation and biochemical charcterisation of very fast sedimenting DNA. J. Virol. 18:1976;992-999.
    • (1976) J. Virol. , vol.18 , pp. 992-999
    • Kemper, B.1    Janz, E.2
  • 74
    • 0016680394 scopus 로고
    • The involvement of genes 3, 4, 5 and 6 in genetic recombination in bacteriophage T7
    • Kerr C., Sadowski P. D. The involvement of genes 3, 4, 5 and 6 in genetic recombination in bacteriophage T7. Virology. 65:1975;281-285.
    • (1975) Virology , vol.65 , pp. 281-285
    • Kerr, C.1    Sadowski, P.D.2
  • 75
    • 0023179984 scopus 로고
    • Homology-dependent interactions in phage λ site-specific recombination
    • Kitts P. A., Nash H. A. Homology-dependent interactions in phage λ site-specific recombination. Nature. 329:1987;346-348.
    • (1987) Nature , vol.329 , pp. 346-348
    • Kitts, P.A.1    Nash, H.A.2
  • 76
    • 0024006722 scopus 로고
    • Initiation of heteroduplex-loop repair by T4-encoded endonuclease VII in vitro
    • Kleff S., Kemper B. Initiation of heteroduplex-loop repair by T4-encoded endonuclease VII in vitro. EMBO J. 7:1988;1527-1535.
    • (1988) EMBO J. , vol.7 , pp. 1527-1535
    • Kleff, S.1    Kemper, B.2
  • 77
    • 0026598677 scopus 로고
    • Identification and characterisation of yeast mutants and the gene for cruciform cutting endonuclease
    • Kleff S., Kemper B., Sternglanz R. Identification and characterisation of yeast mutants and the gene for cruciform cutting endonuclease. EMBO J. 11:1992;699-704.
    • (1992) EMBO J. , vol.11 , pp. 699-704
    • Kleff, S.1    Kemper, B.2    Sternglanz, R.3
  • 78
    • 0025606724 scopus 로고
    • Large-scale preparation of T4 endonuclease VII from over-expressing bacteria
    • Kosak H. G., Kemper B. W. Large-scale preparation of T4 endonuclease VII from over-expressing bacteria. Eur. J. Biochem. 194:1990;779-784.
    • (1990) Eur. J. Biochem. , vol.194 , pp. 779-784
    • Kosak, H.G.1    Kemper, B.W.2
  • 79
    • 0028988416 scopus 로고
    • 2+binding to the active site of Eco RV endonuclease: A crystallographic study of complexes with substrate and product DNA at 2 Å resolution
    • 2+binding to the active site of Eco RV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 Å resolution. Biochemistry. 34:1995;683-696.
    • (1995) Biochemistry , vol.34 , pp. 683-696
    • Kostrewa, D.1    Winkler, F.K.2
  • 80
    • 0029949263 scopus 로고    scopus 로고
    • Reactions of mitochondrial cruciform cutting endonuclease I (CCE1) of yeast Saccharomyces cerevisiae with branched DNAs in vitro
    • Kupfer C., Kemper B. Reactions of mitochondrial cruciform cutting endonuclease I (CCE1) of yeast Saccharomyces cerevisiae with branched DNAs in vitro. Eur. J. Biochem. 238:1996;77-87.
    • (1996) Eur. J. Biochem. , vol.238 , pp. 77-87
    • Kupfer, C.1    Kemper, B.2
  • 81
    • 0019087696 scopus 로고
    • The inverted repeat as a recognisable structural feature in supercoiled DNA molecules
    • Lilley D. M. J. The inverted repeat as a recognisable structural feature in supercoiled DNA molecules. Proc. Natl Acad. Sci. USA. 77:1980;6468-6472.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 6468-6472
    • Lilley, D.M.J.1
  • 82
    • 0029111762 scopus 로고
    • Kinking of DNA and RNA by base bulges
    • Lilley D. M. J. Kinking of DNA and RNA by base bulges. Proc. Natl Acad. Sci. USA. 92:1995;7140-7142.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 7140-7142
    • Lilley, D.M.J.1
  • 83
    • 0027486238 scopus 로고
    • The structure of branched DNA species
    • Lilley D. M. J., Clegg R. M. The structure of branched DNA species. Quart. Rev. Biophys. 26:1993a;131-175.
    • (1993) Quart. Rev. Biophys. , vol.26 , pp. 131-175
    • Lilley, D.M.J.1    Clegg, R.M.2
  • 85
    • 0021381020 scopus 로고
    • Cruciform-resolvase interactions in supercoiled DNA
    • Lilley D. M. J., Kemper B. Cruciform-resolvase interactions in supercoiled DNA. Cell. 36:1984;413-422.
    • (1984) Cell , vol.36 , pp. 413-422
    • Lilley, D.M.J.1    Kemper, B.2
  • 86
    • 0029016344 scopus 로고
    • Nomenclature committee of the International Union of Biochemistry: A nomenclature of junctions and branchpoints in nucleic acids. Recommendations 1994
    • Lilley D. M. J., Clegg R. M., Diekmann S., Seeman N. C., von Kitzing E., Hagerman P. Nomenclature committee of the International Union of Biochemistry: A nomenclature of junctions and branchpoints in nucleic acids. Recommendations 1994. Eur. J. Biochem. 230:1995;1-2.
    • (1995) Eur. J. Biochem. , vol.230 , pp. 1-2
    • Lilley, D.M.J.1    Clegg, R.M.2    Diekmann, S.3    Seeman, N.C.4    Von Kitzing, E.5    Hagerman, P.6
  • 87
    • 0027397630 scopus 로고
    • Dissociation of synthetic Holliday junctions by E. coli RecG protein
    • Lloyd R. G., Sharples G. J. Dissociation of synthetic Holliday junctions by E. coli RecG protein. EMBO J. 12:1993;17-22.
    • (1993) EMBO J. , vol.12 , pp. 17-22
    • Lloyd, R.G.1    Sharples, G.J.2
  • 88
    • 0021223652 scopus 로고
    • Effect of ruv mutations on recombination and DNA repair in Escherichia coli K12
    • Lloyd R. G., Benson F. E., Shurvington C. E. Effect of ruv mutations on recombination and DNA repair in Escherichia coli K12. Mol. Gen. Genet. 194:1984;303-309.
    • (1984) Mol. Gen. Genet. , vol.194 , pp. 303-309
    • Lloyd, R.G.1    Benson, F.E.2    Shurvington, C.E.3
  • 90
    • 0025129328 scopus 로고
    • Drug binding by branched DNA: Selective interaction of tetrapyridyl porphyrins with an immobile junction
    • Lu M., Guo Q., Pasternack R. F., Wink D. J., Seeman N. C., Kallenbach N. R. Drug binding by branched DNA: Selective interaction of tetrapyridyl porphyrins with an immobile junction. Biochemistry. 29:1990;1614-1624.
    • (1990) Biochemistry , vol.29 , pp. 1614-1624
    • Lu, M.1    Guo, Q.2    Pasternack, R.F.3    Wink, D.J.4    Seeman, N.C.5    Kallenbach, N.R.6
  • 91
    • 0029871788 scopus 로고    scopus 로고
    • Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82
    • Mahdi A. A., Sharples G. J., Mandal T. N., Lloyd R. G. Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82. J. Mol. Biol. 257:1996;561-573.
    • (1996) J. Mol. Biol. , vol.257 , pp. 561-573
    • Mahdi, A.A.1    Sharples, G.J.2    Mandal, T.N.3    Lloyd, R.G.4
  • 92
    • 0027236687 scopus 로고
    • Resolution of Holliday intermediates in recombination and DNA repair - Indirect suppression of ruvA,ruvB, and ruvC mutations
    • Mandal T. N., Mahdi A. A., Sharples G. J., Lloyd R. G. Resolution of Holliday intermediates in recombination and DNA repair - indirect suppression of ruvA,ruvB , and ruvC mutations. J. Bacteriol. 175:1993;4325-4334.
    • (1993) J. Bacteriol. , vol.175 , pp. 4325-4334
    • Mandal, T.N.1    Mahdi, A.A.2    Sharples, G.J.3    Lloyd, R.G.4
  • 93
    • 0028876575 scopus 로고
    • Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases
    • Mashal R. D., Koontz J., Sklar J. Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases. Nature Genet. 9:1995;177-183.
    • (1995) Nature Genet. , vol.9 , pp. 177-183
    • Mashal, R.D.1    Koontz, J.2    Sklar, J.3
  • 94
    • 0028349558 scopus 로고
    • Xer-mediated site-specific recombination at cer generates Holliday junctions in vivo
    • McCulloch R., Coggins L. W., Colloms S. D., Sherratt D. J. Xer-mediated site-specific recombination at cer generates Holliday junctions in vivo. EMBO J. 13:1994;1844-1855.
    • (1994) EMBO J. , vol.13 , pp. 1844-1855
    • McCulloch, R.1    Coggins, L.W.2    Colloms, S.D.3    Sherratt, D.J.4
  • 96
    • 0029783042 scopus 로고    scopus 로고
    • Role of RuvA in branch migration reactions catalyzed by the RuvA and RuvB proteins of Escherichia coli
    • Mitchell A. H., West S. C. Role of RuvA in branch migration reactions catalyzed by the RuvA and RuvB proteins of Escherichia coli. J. Biol. Chem. 271:1996;19497-19502.
    • (1996) J. Biol. Chem. , vol.271 , pp. 19497-19502
    • Mitchell, A.H.1    West, S.C.2
  • 97
    • 0020146223 scopus 로고
    • T4 endonuclease VII cleaves Holliday structures
    • Mizuuchi K., Kemper B., Hays J., Weisberg R. A. T4 endonuclease VII cleaves Holliday structures. Cell. 29:1982;357-365.
    • (1982) Cell , vol.29 , pp. 357-365
    • Mizuuchi, K.1    Kemper, B.2    Hays, J.3    Weisberg, R.A.4
  • 99
    • 0027236769 scopus 로고
    • Branch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB proteins.1. Comparison of RuvAB-mediated and RuvB-mediated reactions
    • Muller B., Tsaneva I. R., West S. C. Branch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB proteins.1. Comparison of RuvAB-mediated and RuvB-mediated reactions. J. Biol. Chem. 268:1993a;17179-17184.
    • (1993) J. Biol. Chem. , vol.268 , pp. 17179-17184
    • Muller, B.1    Tsaneva, I.R.2    West, S.C.3
  • 100
    • 0027184479 scopus 로고
    • Branch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB protein. 2. Interaction of RuvB with DNA
    • Muller B., Tsaneva I. R., West S. C. Branch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB protein. 2. Interaction of RuvB with DNA. J. Biol. Chem. 268:1993b;17185-17189.
    • (1993) J. Biol. Chem. , vol.268 , pp. 17185-17189
    • Muller, B.1    Tsaneva, I.R.2    West, S.C.3
  • 101
    • 0027375958 scopus 로고
    • T4 endonuclease VII cleaves DNA containing a cisplatin adduct
    • Murchie A. I. H., Lilley D. M. J. T4 endonuclease VII cleaves DNA containing a cisplatin adduct. J. Mol. Biol. 233:1993;77-85.
    • (1993) J. Mol. Biol. , vol.233 , pp. 77-85
    • Murchie, A.I.H.1    Lilley, D.M.J.2
  • 102
    • 0024458010 scopus 로고
    • Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules
    • Murchie A. I. H., Clegg R. M., von Kitzing E., Duckett D. R., Diekmann S., Lilley D. M. J. Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules. Nature. 341:1989;763-766.
    • (1989) Nature , vol.341 , pp. 763-766
    • Murchie, A.I.H.1    Clegg, R.M.2    Von Kitzing, E.3    Duckett, D.R.4    Diekmann, S.5    Lilley, D.M.J.6
  • 103
    • 0027440878 scopus 로고
    • Repair of DNA methylphosphotriesters through a metalloactivated cysteine nucleophile
    • Myers L. C., Terranova M. P., Ferentz A. E., Wagner G., Verdine G. L. Repair of DNA methylphosphotriesters through a metalloactivated cysteine nucleophile. Science. 261:1993;1164-1167.
    • (1993) Science , vol.261 , pp. 1164-1167
    • Myers, L.C.1    Terranova, M.P.2    Ferentz, A.E.3    Wagner, G.4    Verdine, G.L.5
  • 104
    • 0024441308 scopus 로고
    • Evidence from extended X-ray absorption fine structure and site-specific mutagenesis for zinc fingers in UvrA protein ofEscherichia coli
    • Navaratnam S., Myles G. M., Strange R. W., Sancar A. Evidence from extended X-ray absorption fine structure and site-specific mutagenesis for zinc fingers in UvrA protein ofEscherichia coli. J. Biol. Chem. 264:1989;16067-16071.
    • (1989) J. Biol. Chem. , vol.264 , pp. 16067-16071
    • Navaratnam, S.1    Myles, G.M.2    Strange, R.W.3    Sancar, A.4
  • 105
    • 0018597617 scopus 로고
    • Purification and some properties of a deoxyribonuclease whose synthesis is controlled by gene 49 of bacteriophage T4
    • Nishimoto H., Takayama M., Minagawa T. Purification and some properties of a deoxyribonuclease whose synthesis is controlled by gene 49 of bacteriophage T4. J. Biochem. 100:1979;433-440.
    • (1979) J. Biochem. , vol.100 , pp. 433-440
    • Nishimoto, H.1    Takayama, M.2    Minagawa, T.3
  • 106
    • 0023667024 scopus 로고
    • Site-specific recombination intermediates trapped with suicide substrates
    • Nunes-Düby S. E., Matsomoto L., Landy A. Site-specific recombination intermediates trapped with suicide substrates. Cell. 50:1987;779-788.
    • (1987) Cell , vol.50 , pp. 779-788
    • Nunes-Düby, S.E.1    Matsomoto, L.2    Landy, A.3
  • 107
  • 108
    • 0024474373 scopus 로고
    • A site-targeted recombinant nuclease probe of DNA structure
    • Panayotatos N., Backman S. A site-targeted recombinant nuclease probe of DNA structure. J. Biol. Chem. 264:1989;15070-15073.
    • (1989) J. Biol. Chem. , vol.264 , pp. 15070-15073
    • Panayotatos, N.1    Backman, S.2
  • 109
    • 0019350114 scopus 로고
    • Cruciform structures in supercoiled DNA
    • Panayotatos N., Wells R. D. Cruciform structures in supercoiled DNA. Nature. 289:1981;466-470.
    • (1981) Nature , vol.289 , pp. 466-470
    • Panayotatos, N.1    Wells, R.D.2
  • 110
    • 0027200006 scopus 로고
    • Formation of a single base mismatch impedes spontaneous DNA branch migration
    • Panyutin I. G., Hsieh P. Formation of a single base mismatch impedes spontaneous DNA branch migration. J. Mol. Biol. 230:1993;413-424.
    • (1993) J. Mol. Biol. , vol.230 , pp. 413-424
    • Panyutin, I.G.1    Hsieh, P.2
  • 111
    • 0028343925 scopus 로고
    • The kinetics of spontaneous DNA branch migration
    • Panyutin I. G., Hsieh P. The kinetics of spontaneous DNA branch migration. Proc. Natl Acad. Sci. USA. 91:1994;2021-2025.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 2021-2025
    • Panyutin, I.G.1    Hsieh, P.2
  • 112
    • 0029019745 scopus 로고
    • A pivotal role for the structure of the Holliday junction in DNA branch migration
    • Panyutin I. G., Biswas I., Hsieh P. A pivotal role for the structure of the Holliday junction in DNA branch migration. EMBO J. 14:1995;1819-1826.
    • (1995) EMBO J. , vol.14 , pp. 1819-1826
    • Panyutin, I.G.1    Biswas, I.2    Hsieh, P.3
  • 113
    • 0343035706 scopus 로고    scopus 로고
    • The junction-resolving enzyme T7 endonuclease I: Quaternary structure and interaction with DNA
    • Parkinson M. J., Lilley D. M. J. The junction-resolving enzyme T7 endonuclease I: Quaternary structure and interaction with DNA. J. Mol. Biol. 00:1997;00-In the press.
    • (1997) J. Mol. Biol. , vol.0
    • Parkinson, M.J.1    Lilley, D.M.J.2
  • 114
    • 0025359444 scopus 로고
    • Interaction of a four-way junction in DNA with T4 endonuclease VII
    • Parsons C. A., Kemper B., West S. C. Interaction of a four-way junction in DNA with T4 endonuclease VII. J. Biol. Chem. 265:1990;9285-9289.
    • (1990) J. Biol. Chem. , vol.265 , pp. 9285-9289
    • Parsons, C.A.1    Kemper, B.2    West, S.C.3
  • 115
    • 0026741832 scopus 로고
    • Interaction of Escherichia coli RuvA and RuvB proteins with synthetic Holliday junctions
    • Parsons C. A., Tsaneva I., Lloyd R. G., West S. C. Interaction of Escherichia coli RuvA and RuvB proteins with synthetic Holliday junctions. Proc. Natl Acad. Sci. USA. 89:1992;5452-5456.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 5452-5456
    • Parsons, C.A.1    Tsaneva, I.2    Lloyd, R.G.3    West, S.C.4
  • 116
    • 0028968305 scopus 로고
    • Structure of a multisubunit complex that promotes DNA branch migration
    • Parsons C. A., Stasiak A., Bennett R. J., West S. C. Structure of a multisubunit complex that promotes DNA branch migration. Nature. 374:1995;375-378.
    • (1995) Nature , vol.374 , pp. 375-378
    • Parsons, C.A.1    Stasiak, A.2    Bennett, R.J.3    West, S.C.4
  • 117
    • 0028942862 scopus 로고
    • A novel type of interaction between cruciform DNA and a cruciform binding protein from HeLa cells
    • Pearson C. E., Zannishadjopoulos M., Price G. B., Zorbas H. A novel type of interaction between cruciform DNA and a cruciform binding protein from HeLa cells. EMBO J. 14:1995;1571-1580.
    • (1995) EMBO J. , vol.14 , pp. 1571-1580
    • Pearson, C.E.1    Zannishadjopoulos, M.2    Price, G.B.3    Zorbas, H.4
  • 118
    • 0028607348 scopus 로고
    • NMR studies and conformational analysis of a DNA four-way junction formed in a linear synthetic oligonucleotide
    • Pikkemaat J. A., van Den Elst H., van Boom J. H., Altona C. NMR studies and conformational analysis of a DNA four-way junction formed in a linear synthetic oligonucleotide. Biochemistry. 33:1994;14896-14907.
    • (1994) Biochemistry , vol.33 , pp. 14896-14907
    • Pikkemaat, J.A.1    Van Den Elst, H.2    Van Boom, J.H.3    Altona, C.4
  • 119
    • 0028304612 scopus 로고
    • Structure of four-way DNA junctions containing a nick in one strand
    • Pöhler J. R. G., Duckett D. R., Lilley D. M. J. Structure of four-way DNA junctions containing a nick in one strand. J. Mol. Biol. 238:1994;62-74.
    • (1994) J. Mol. Biol. , vol.238 , pp. 62-74
    • Pöhler, J.R.G.1    Duckett, D.R.2    Lilley, D.M.J.3
  • 120
    • 0030564937 scopus 로고    scopus 로고
    • T4 endonuclease VII selects and alters the structure of the four-way DNA junction; Binding of a resolution-defective mutant enzyme
    • Pöhler J. R. G., Giraud-Panis M.-J. E., Lilley D. M. J. T4 endonuclease VII selects and alters the structure of the four-way DNA junction; binding of a resolution-defective mutant enzyme. J. Mol. Biol. 260:1996;678-696.
    • (1996) J. Mol. Biol. , vol.260 , pp. 678-696
    • Pöhler, J.R.G.1    Giraud-Panis M.-J., E.2    Lilley, D.M.J.3
  • 122
    • 0016301438 scopus 로고
    • Some functions involved in bacteriophage T7 genetic recombination
    • Powling A., Knippers R. Some functions involved in bacteriophage T7 genetic recombination. Mol. Gen. Genet. 134:1974;173-180.
    • (1974) Mol. Gen. Genet. , vol.134 , pp. 173-180
    • Powling, A.1    Knippers, R.2
  • 124
    • 0015216975 scopus 로고
    • Bacteriophage T7 endonuclease. I. Properties of the enzyme purified from T7 phage-infected Escherichia coli B
    • Sadowski P. D. Bacteriophage T7 endonuclease. I. Properties of the enzyme purified from T7 phage-infected Escherichia coli B. J. Biol. Chem. 246:1971;209-216.
    • (1971) J. Biol. Chem. , vol.246 , pp. 209-216
    • Sadowski, P.D.1
  • 125
    • 0029142820 scopus 로고
    • Identification of four acidic amino acids that constitute the catalytic centre of the RuvC Holliday junction resolvase
    • Saito A., Iwasaki H., Ariyoshi M., Morikawa K., Shinagawa H. Identification of four acidic amino acids that constitute the catalytic centre of the RuvC Holliday junction resolvase. Proc. Natl Acad. Sci. USA. 92:1995;7470-7474.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 7470-7474
    • Saito, A.1    Iwasaki, H.2    Ariyoshi, M.3    Morikawa, K.4    Shinagawa, H.5
  • 126
    • 0028972024 scopus 로고
    • Identification of double Holliday junctions as intermediates in meiotic recombination
    • Schwacha A., Kleckner N. Identification of double Holliday junctions as intermediates in meiotic recombination. Cell. 83:1995;783-791.
    • (1995) Cell , vol.83 , pp. 783-791
    • Schwacha, A.1    Kleckner, N.2
  • 128
    • 0028043346 scopus 로고
    • Genetic recombination in E. coli: RuvC protein cleaves Holliday junctions at resolution hotspots in vitro
    • Shah R., Bennett R. J., West S. C. Genetic recombination in E. coli: RuvC protein cleaves Holliday junctions at resolution hotspots in vitro. Cell. 79:1994;853-864.
    • (1994) Cell , vol.79 , pp. 853-864
    • Shah, R.1    Bennett, R.J.2    West, S.C.3
  • 129
    • 0025720560 scopus 로고
    • Resolution of Holliday junctions in E. coli: Identification of the ruvC gene product as a 19 kDa protein
    • Sharples G. J., Lloyd R. G. Resolution of Holliday junctions in E. coli: identification of the ruvC gene product as a 19 kDa protein. J. Bacteriol. 173:1991;7711-7715.
    • (1991) J. Bacteriol. , vol.173 , pp. 7711-7715
    • Sharples, G.J.1    Lloyd, R.G.2
  • 130
    • 0027221081 scopus 로고
    • An E. coli RuvC mutant defective in cleavage of synthetic Holliday junctions
    • Sharples G. J., Lloyd R. G. An E. coli RuvC mutant defective in cleavage of synthetic Holliday junctions. Nucl. Acids Res. 21:1993;3359-3364.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 3359-3364
    • Sharples, G.J.1    Lloyd, R.G.2
  • 131
    • 0028590083 scopus 로고
    • Processing of intermediates in recombination and DNA repair: Identification of a new endonuclease that specifically cleaves Holliday junctions
    • Sharples G. J., Chan S. N., Mahdi A. A., Whitby M. C., Lloyd R. G. Processing of intermediates in recombination and DNA repair: identification of a new endonuclease that specifically cleaves Holliday junctions. EMBO J. 13:1994;6133-6142.
    • (1994) EMBO J. , vol.13 , pp. 6133-6142
    • Sharples, G.J.1    Chan, S.N.2    Mahdi, A.A.3    Whitby, M.C.4    Lloyd, R.G.5
  • 132
    • 0027413084 scopus 로고
    • Escherichia coli RuvA and RuvB proteins involved in recombination repair - Physical properties and interactions with DNA
    • Shiba T., Iwasaki H., Nakata A., Shinagawa H. Escherichia coli RuvA and RuvB proteins involved in recombination repair - physical properties and interactions with DNA. Mol. Gen. Genet. 237:1993;395-399.
    • (1993) Mol. Gen. Genet. , vol.237 , pp. 395-399
    • Shiba, T.1    Iwasaki, H.2    Nakata, A.3    Shinagawa, H.4
  • 133
    • 0029908324 scopus 로고    scopus 로고
    • Analysis of substrate specificity of the RuvC Holliday junction resolvase with synthetic Holliday junctions
    • Shida T., Iwasaki H., Saito A., Kyogoku Y., Shinagawa H. Analysis of substrate specificity of the RuvC Holliday junction resolvase with synthetic Holliday junctions. J. Biol. Chem. 271:1996;26105-26109.
    • (1996) J. Biol. Chem. , vol.271 , pp. 26105-26109
    • Shida, T.1    Iwasaki, H.2    Saito, A.3    Kyogoku, Y.4    Shinagawa, H.5
  • 134
    • 0027157443 scopus 로고
    • Endonuclease-VII of phage-T4 triggers mismatch correction in vitro
    • Solaro P. C., Birkenkamp K., Pfeiffer P., Kemper B. Endonuclease-VII of phage-T4 triggers mismatch correction in vitro. J. Mol. Biol. 230:1993;868-877.
    • (1993) J. Mol. Biol. , vol.230 , pp. 868-877
    • Solaro, P.C.1    Birkenkamp, K.2    Pfeiffer, P.3    Kemper, B.4
  • 136
    • 0026511976 scopus 로고
    • In vitro resolution of poxvirus replicative intermediates into linear minichromosomes with hairpin termini by a virally induced Holliday junction endonuclease
    • Stuart D., Ellison K., Graham K., McFadden G. In vitro resolution of poxvirus replicative intermediates into linear minichromosomes with hairpin termini by a virally induced Holliday junction endonuclease. J. Virol. 66:1992;1551-1563.
    • (1992) J. Virol. , vol.66 , pp. 1551-1563
    • Stuart, D.1    Ellison, K.2    Graham, K.3    McFadden, G.4
  • 137
    • 0014603893 scopus 로고
    • The genetics and physiology of bacteriophage T7
    • Studier F. W. The genetics and physiology of bacteriophage T7. Virology. 39:1969;562-574.
    • (1969) Virology , vol.39 , pp. 562-574
    • Studier, F.W.1
  • 138
    • 0003159786 scopus 로고
    • Nuclease structure and catalytic function
    • Suck D. Nuclease structure and catalytic function. Curr. Opin. Struct. Biol. 2:1992;84-92.
    • (1992) Curr. Opin. Struct. Biol. , vol.2 , pp. 84-92
    • Suck, D.1
  • 139
    • 0022379662 scopus 로고
    • Partial purification of an endonuclease from Saccharomyces cerevisiae that cleaves Holliday junctions
    • Symington L., Kolodner R. Partial purification of an endonuclease from Saccharomyces cerevisiae that cleaves Holliday junctions. Proc. Natl Acad. Sci. USA. 82:1985;7247-7251.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 7247-7251
    • Symington, L.1    Kolodner, R.2
  • 140
    • 0025940780 scopus 로고
    • Molecular analysis of the Escherichia coliruvC gene, which encodes a Holliday junction specific endonuclease
    • Takahagi M., Iwasaki H., Nakata A., Shinagawa H. Molecular analysis of the Escherichia coliruvC gene, which encodes a Holliday junction specific endonuclease. J. Bacteriol. 173:1991;5747-5753.
    • (1991) J. Bacteriol. , vol.173 , pp. 5747-5753
    • Takahagi, M.1    Iwasaki, H.2    Nakata, A.3    Shinagawa, H.4
  • 141
    • 0028339115 scopus 로고
    • Structural requirements of substrate DNA for binding to and cleavage by RuvC, a Holliday junction resolvase
    • Takahagi M., Iwasaki H., Shinagawa H. Structural requirements of substrate DNA for binding to and cleavage by RuvC, a Holliday junction resolvase. J. Biol. Chem. 269:1994;15132-15139.
    • (1994) J. Biol. Chem. , vol.269 , pp. 15132-15139
    • Takahagi, M.1    Iwasaki, H.2    Shinagawa, H.3
  • 144
    • 0026444104 scopus 로고
    • Purification and properties of the RuvA and RuvB proteins of Escherichia coli
    • Tsaneva I. R., Illing G., Lloyd R. G., West S. C. Purification and properties of the RuvA and RuvB proteins of Escherichia coli. Mol. Gen. Genet. 235:1992a;1-10.
    • (1992) Mol. Gen. Genet. , vol.235 , pp. 1-10
    • Tsaneva, I.R.1    Illing, G.2    Lloyd, R.G.3    West, S.C.4
  • 145
    • 0026633047 scopus 로고
    • ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli
    • Tsaneva I. R., Muller B., West S. C. ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli. Cell. 69:1992b;1171-1180.
    • (1992) Cell , vol.69 , pp. 1171-1180
    • Tsaneva, I.R.1    Muller, B.2    West, S.C.3
  • 146
    • 0027476446 scopus 로고
    • RuvA and RuvB proteins of Escherichia coli exhibit DNA helicase activity in vitro
    • Tsaneva I. R., Muller B., West S. C. RuvA and RuvB proteins of Escherichia coli exhibit DNA helicase activity in vitro. Proc. Natl Acad. Sci. USA. 90:1993;1315-1319.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 1315-1319
    • Tsaneva, I.R.1    Muller, B.2    West, S.C.3
  • 147
    • 0018159215 scopus 로고
    • Intermediates in genetic recombination of bacteriophage T7 DNA. Biological activity and the roles of gene 3 and gene 5
    • Tsujimoto Y., Ogawa H. Intermediates in genetic recombination of bacteriophage T7 DNA. Biological activity and the roles of gene 3 and gene 5. J. Mol. Biol. 125:1978;255-273.
    • (1978) J. Mol. Biol. , vol.125 , pp. 255-273
    • Tsujimoto, Y.1    Ogawa, H.2
  • 148
    • 0027452325 scopus 로고
    • Preferential binding of histone H1 to four-way helical junction DNA
    • Varga-Weisz P., van Holde K. E., Zlatanova J. Preferential binding of histone H1 to four-way helical junction DNA. J. Biol. Chem. 268:1993;20699-20700.
    • (1993) J. Biol. Chem. , vol.268 , pp. 20699-20700
    • Varga-Weisz, P.1    Van Holde, K.E.2    Zlatanova, J.3
  • 149
    • 0025266027 scopus 로고
    • The stereochemistry of a four-way DNA junction: A theoretical study
    • von Kitzing E., Lilley D. M. J., Diekmann S. The stereochemistry of a four-way DNA junction: a theoretical study. Nucl. Acids Res. 18:1990;2671-2683.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 2671-2683
    • Von Kitzing, E.1    Lilley, D.M.J.2    Diekmann, S.3
  • 150
    • 0023725004 scopus 로고
    • Resolution of synthetic Holliday structures by an extract of human cells
    • Waldman A. S., Liskay R. M. Resolution of synthetic Holliday structures by an extract of human cells. Nucl. Acids Res. 16:1988;10249-10266.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 10249-10266
    • Waldman, A.S.1    Liskay, R.M.2
  • 151
    • 0028307439 scopus 로고
    • A mutational study of the C-terminal zinc-finger motif of the Escherichia coli UvrA protein
    • Wang J., Mueller K. L., Grossman L. A mutational study of the C-terminal zinc-finger motif of the Escherichia coli UvrA protein. J. Biol. Chem. 269:1994;10771-10775.
    • (1994) J. Biol. Chem. , vol.269 , pp. 10771-10775
    • Wang, J.1    Mueller, K.L.2    Grossman, L.3
  • 152
    • 0345116605 scopus 로고
    • Cleavage of cruciform DNA structures by an activity from Saccharomyces cerevisiae
    • West S. C., Korner A. Cleavage of cruciform DNA structures by an activity from Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA. 82:1985;6445-6449.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 6445-6449
    • West, S.C.1    Korner, A.2
  • 153
    • 0028005448 scopus 로고
    • Branch migration of Holliday junctions: Identification of RecG protein as a junction specific DNA helicase
    • Whitby M. C., Vincent S. D., Lloyd R. G. Branch migration of Holliday junctions: Identification of RecG protein as a junction specific DNA helicase. EMBO J. 13:1994;5220-5228.
    • (1994) EMBO J. , vol.13 , pp. 5220-5228
    • Whitby, M.C.1    Vincent, S.D.2    Lloyd, R.G.3
  • 154
    • 0029880444 scopus 로고    scopus 로고
    • The structure-selectivity and sequence-preference of the junction-resolving enzyme CCE1 of Saccharomyces cerevisiae
    • White M. F., Lilley D. M. J. The structure-selectivity and sequence-preference of the junction-resolving enzyme CCE1 of Saccharomyces cerevisiae. J. Mol. Biol. 257:1996;330-341.
    • (1996) J. Mol. Biol. , vol.257 , pp. 330-341
    • White, M.F.1    Lilley, D.M.J.2
  • 155
    • 0031566965 scopus 로고    scopus 로고
    • The resolving enzyme CCE1 of yeast opens the structure of the four-way DNA junction
    • White M. F., Lilley D. M. J. The resolving enzyme CCE1 of yeast opens the structure of the four-way DNA junction. J. Mol. Biol. 266:1997;122-134.
    • (1997) J. Mol. Biol. , vol.266 , pp. 122-134
    • White, M.F.1    Lilley, D.M.J.2
  • 156
    • 0025129937 scopus 로고
    • Structure of ribonuclease H phased at 2 Å resolution by MAD analysis of the selenomethionyl protein
    • Yang W., Hendrickson W. A., Crouch R. J., Satow Y. Structure of ribonuclease H phased at 2 Å resolution by MAD analysis of the selenomethionyl protein. Science. 249:1990;1398-1405.
    • (1990) Science , vol.249 , pp. 1398-1405
    • Yang, W.1    Hendrickson, W.A.2    Crouch, R.J.3    Satow, Y.4
  • 157
    • 0028899568 scopus 로고
    • Screening for mutations by enzyme mismatch cleavage with T4 endonuclease VII
    • Youil R., Kemper B., Cotton R. G. H. Screening for mutations by enzyme mismatch cleavage with T4 endonuclease VII. Proc. Natl Acad. Sci. USA. 92:1995;87-91.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 87-91
    • Youil, R.1    Kemper, B.2    Cotton, R.G.H.3
  • 158
    • 0026046638 scopus 로고
    • A nuclear mutation reversing a biased transmission of yeast mitochondrial DNA
    • Zweifel S. G., Fangman W. L. A nuclear mutation reversing a biased transmission of yeast mitochondrial DNA. Genetics. 128:1991;241-249.
    • (1991) Genetics , vol.128 , pp. 241-249
    • Zweifel, S.G.1    Fangman, W.L.2


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