Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase β by x-ray structural analysis

Biochemistry

Volumn 35, Issue 39, 1996, Pages 12778-12787

  Pelletier, Huguette ^b   Sawaya, Michael R ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BARIUM ION; CALCIUM ION; CESIUM; DNA DIRECTED DNA POLYMERASE BETA; HELIX LOOP HELIX PROTEIN; MAGNESIUM ION; MANGANESE; METAL ION; POTASSIUM ION; SODIUM ION; THALLIUM;

ARTICLE; METAL BINDING; PRIORITY JOURNAL; PROTEIN DNA BINDING; X RAY CRYSTALLOGRAPHY;

BINDING SITES; BINDING, COMPETITIVE; CALCIUM; CRYSTALLOGRAPHY, X-RAY; DNA; DNA POLYMERASE I; HUMANS; MANGANESE; METALS; MODELS, MOLECULAR; MUTAGENS; PHOSPHOLIPASES A; POTASSIUM; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; SODIUM;

EID: 0029836483     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi960790i     Document Type: Article

References (28)

1. Cowan, J. A. (1993) Inorganic Biochemistry, An Introduction, VCH Publishers, New York,
2. da Silva, J. J. R. F., & Williams, R. J. P. (1991) The Biological Chemistry of the Elements: The Inorganic Chemistry of Life, Clarendon, Oxford, England.
3. Davies, J. F., Almassy, R. J., Hostomska, Z., Ferre, R. A., & Hostomsky, Z. (1994) Cell 76, 1123-1133.
4. Douglas, K. T., Bunni, M. A., & Baindur, S. R. (1990) Int. J. Biochem. 22, 429-438.
5. Evans, S. V. (1993) J. Mol. Graphics 11, 134-138.
6. Gale, E. F., et al. (1981) The Molecular Basis of Antibiotic Action, Chapt. 4, Wiley, New York.
7. Hamlin, R. (1985) Methods Enzymol. 114, 416-452.
8. Heaton, F. W. (1993) in Magnesium and the Cell (Birch, N. J., Ed.) Chapt. 8, Academic Press, San Diego, CA.
9. Howard, A. J., Nielsen, C., & Xuong, H. H. (1985) Methods Enzymol. 114, 452-412.
10. Johnson, K. A. (1993) Annu. Rev. Biochem. 62,
11. Kornberg, A., & Baker, T. A. (1992) DNA Replication, 2nd ed.. Freeman, San Francisco, CA.
12. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
13. Lide, D. R. (1992) CRC Handbook of Chemistry and Physics, 73rd ed., CRC Press, Boca Raton, FL.
14. Matsumoto, Y., & Kim, K., (1995) Science 269, 699-702.
15. Moews, P. C., & Kretsinger, R. H. (1975) J. Mol. Biol. 91, 201-225.
16. Pelletier, H., Sawaya, M. R., Kumar, A., Wilson, S. H., & Kraut, J. (1994) Science 264, 1891-1903.
17. Pelletier, H., Sawaya, M. R., Wolfle, W., Wilson, S. H., & Kraut, J. (1996a) Biochemistry 35, 12742-12761.
18. Pelletier, H., Sawaya, M. R., Wolfle, W., Wilson, S. H., & Kraut, J. (1996b) Biochemistry 35, 12762-12777.
19. Prasad, R., Beard, W. A., & Wilson, S. H. (1994) J. Biol. Chem. 269, 18096-18101.
20. Sawaya, M. R., Pelletier, H., Kumar, A., Wilson, S. H., & Kraut, J. (1994) Science 264, 1930-1935.
21. Sirover, M. A., & Loeb, L. A. (1976) Science 194, 1434-1436.
22. Snow, E. T., & Xu, L. S. (1991) Biochemistry 30, 11238-11245.
23. Snow, E. T., Xu, L. S., & Kinney, P. L. (1993) Chem.-Biol. Interact. 88, 155-173.
24. Tronrud, D. E., Ten Eyck, L. F., & Matthews, B. W. (1987) Acta. Crystallogr. A43, 489-501.
25. Versieck, J., & Cornells, R. (1989) Trace Elements in Human Plasma or Serum, CRC Press, Boca Raton, FL.
26. Wang, T. S.-F., Eichler, D. C., & Korn, D. (1977) Biochemistry 16, 4927-4934.
27. Wang, T. S.-F., & Korn, D. (1982) Biochemistry 21, 1597-1608.
28. White, S. P., Scott, D. L., Otwinowski, Z., Gelb, M. H., & Sigler, P. B. (1990) Science 250, 1560-1563.