Cellular gene expression altered by human cytomegalovirus: Global monitoring with oligonucleotide arrays

Proceedings of the National Academy of Sciences of the United States of America

Volumn 95, Issue 24, 1998, Pages 14470-14475

  Zhu, Hua ^a   Cong, Jian Ping ^a   Mamtora, Gargi ^b   Gingeras, Thomas ^b   Shenk, Thomas ^a  

^a PRINCETON UNIVERSITY   (United States)

^b Thermo Fisher Scientific   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CYTOMEGALOVIRUS; DNA REPLICATION; GENE EXPRESSION REGULATION; GENE MUTATION; HUMAN; HUMAN CELL; MONITORING; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PHENOTYPE; PRIORITY JOURNAL; REGULATOR GENE; TARGET CELL; TRANSCRIPTION REGULATION; UNINDEXED SEQUENCE; VIRUS CELL INTERACTION;

ANNEXIN A1; BASE SEQUENCE; CELLS, CULTURED; CYCLOOXYGENASE 2; CYTOMEGALOVIRUS; DNA; DNA-BINDING PROTEINS; FIBROBLASTS; GENE EXPRESSION REGULATION; HLA ANTIGENS; HUMANS; ISOENZYMES; MALE; MEMBRANE PROTEINS; MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR; OLIGODEOXYRIBONUCLEOTIDES; PHOSPHOLIPASES A; PROMOTER REGIONS (GENETICS); PROSTAGLANDIN-ENDOPEROXIDE SYNTHASES; RIBONUCLEOPROTEINS; RNA, MESSENGER; SKIN; THROMBOSPONDINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

ANIMALIA; CYTOMEGALOVIRUS; DNA VIRUSES; HUMAN HERPESVIRUS 5;

EID: 0032564342     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.95.24.14470     Document Type: Article

References (58)

1. Yurochko, A. D., Hwang, E. S., Rasmussen, L., Keay, S., Pereira, L. & Huang, E. S. (1997) J. Virol. 71, 5051-5059.
2. Liu, B. & Stinski, M. F. (1992) J. Virol. 66, 4434-4444.
3. Pizzorno, M. C., O'Hare, P., Sha, L., LaFemina, R. L. & Hayward, G. S. (1988) J. Virol. 62, 1167-1179.
4. Malone, C. L, Vesole, D. H. & Stinski, M. F. (1990) J. Virol. 64, 1498-1506.
5. Stenberg, R. M., Fortney, J., Barlow, S. W., Magrane, B. P., Nelson, J. A. & Ghazal, P. (1990) J. Virol. 64, 1556-1565.
6. Chee, M. S., Satchwell, S. C., Preddie, E., Weston, K. M. & Barrell, B. G. (1990) Nature (London) 344, 774-777.
7. Welch, A. R., McGregor, L. M. & Gibson, W. (1991) J. Virol. 65, 3915-3918.
8. Jault, F. M., Jault, J. M., Ruchti, R., Fortunato, E. A., Clark, C., Corbeil, J., Richman, D. D. & Spector, D. H. (1995) J. Virol. 69, 6697-6704.
9. Bresnahan, W. A., Boldogh, I., Thompson, E. A. & Albrecht, T. (1996) Virology 224, 150-160.
10. Lu, M. & Shenk, T. (1996) J. Virol. 70, 8850-8857.
11. Dittmer, D. & Mocarski, E. S. (1997) J. Virol. 71, 1629-1634.
12. Mocarski, E. S. (1996) in Fields Virology, eds. Fields, B. N., Knipe, D. M. & Howley, P. M. (Lippencott, Philadelphia), pp. 2447-2492.
13. Zhu, H., Cong, J-P. & Shenk, T. (1997) Proc. Natl. Acad. Sci. USA 94, 13985-13990.
14. Baldick, C. J. & Shenk, T. (1996) J. Virol. 70, 6097-6105.
15. Wodicka, L., Dong, H., Mittmann, M., Ho, M. & Lockhart, D. J. (1997) Nat. Biotechnol. 15, 1359-1367.
16. Lockhart, D. J., Dong, H., Byrne, M. C., Follette, M. T., Gallo, M. V., Chee, M. S., Mittmann, M., Wang, C., Kobayashi, M., Horton, H., et al. (1996) Nat. Biotechnol. 14, 1675-1680.
17. Fodor, S. P. A., Read, J. L., Pirrung, M. C., Stryer, L., Lu, A. T. & Solas, D. (1991) Science 251, 767-773.
18. Fodor, S. P. A., Rava, R. P., Huang, X. C., Pease, A. C., Holmes, C. P. & Adams, C. L. (1993) Science 364, 555-556.
19. Pease, A. C., Solas, D., Sullivan, E. J., Cronin, M. T., Holmes, C. P. & Fodor, S. P. A. (1994) Proc. Natl. Acad. Sci. USA 91, 5022-5026.
20. Lipshutz, R. J., Morris, D., Chee, M., Hubbell, E., Kozal, M. J., Shah, N., Shen, N., Yang, R. & Fodor, S. P. (1995) BioTechniques 19, 442-447.
21. Chee, M., Yang, R., Hubbell, E., Berno, A., Huang, X. C., Stern, D., Winkler, J., Lockhart, D. J., Morris, M. S. & Fodor, S. P. A. (1996) Science 274, 610-614.
22. Quinnan, G. V., Jr., Delery, M., Rook, A. H., Frederick, W. R., Epstein, J. S., Manischewitz, J. F., Jackson, L., Ramsey, K. M., Mittal, K., Plotkin, S. A., et al. (1984) Ann. Intern. Med. 101, 478-483.
23. Ahn, K., Angulo, A., Ghazal, P., Peterson, P. A, Yang, Y. & Fruh, K. (1996) Proc. Natl. Acad. Sci. USA 93, 10990-10995.
24. Jones, T. R., Wiertz, E. J., Sun, L., Fish, K. N., Nelson, J. A. & Ploegh, H. L. (1996) Proc. Natl. Acad. Sci. USA 93, 11327-11333.
25. Wiertz, E. J., Jones, T. R., Sun, L., Bogyo, M., Geuze, H. J. & Ploegh, H. L. (1996) Cell 84, 769-779.
26. Ahn, K., Gruhler, A., Galocha, B., Jones, T. R., Wiertz, E. J., Ploegh, H. L., Peterson, P. A., Yang, Y. & Fruh, K. (1997) Immunity 6, 613-621.
27. Hengel, H., Koopmann, J. O., Floh, T., Muranyi, W., Goulmy, E., Hammerling, G. J., Koszinowski, U. H. & Momburg, F. (1997) Immunity 6, 623-632.
28. Jones, T. R. & Sun, L. (1997) J. Virol. 71, 2970-2979.
29. Braud, V., Jones, E. Y. & McMichael, A. (1997) Eur. J. Immunol. 27, 1164-1169.
30. Borrego, F., Ulbrecht, M., Weiss, E. H., Coligan, J. E. & Brooks, A. G. (1998) J. Exp. Med. 187, 813-818.
31. Braud, V. M., Allan, D. S. J., O'Callaghan, C. A., Soderstrom, K., D'Andrea, A., Ogg, G. S., Lazetic, S., Yound, N. T., Bell, J. I., Phillips, J. H., et al. (1998) Nature (London) 391, 795-799.
32. Rayburn, H. T., Mandelboim, O., Vales-Gomez, M., Davis, D. M., Pazmany, L. & Strominger, J. L. (1997) Nature (London) 386, 514-517.
33. Bouffard, P., Laniel, M-A. & Boire, G. (1996) J. Rheumatol. 23, 1838-1841.
34. Finkelstein, Y., Adler, Y., Harel, L., Nussinovitch, M. & Youinou, P. (1997) Ann. Med. Interne (Paris) 148, 205-208.
35. Herrath, M. G. & Oldstone, M. B. A. (1996) Curr. Opin. Immunol. 8, 878-885.
36. Igarashi, T., Itoh, Y., Fukunaga, Y. & Yamamoto, M. (1995) Autoimmunity 22, 33-42.
37. O'Donoghue, H. L., Lawson, C. M. & Reed, W. D. (1990) Immunology 71, 20-28.
38. Lawson, C. M., O'Donoghue, H. L., Farrell, H. E., Shellam, G. R. & Reed, W. D. (1991) Immunology 72, 426-433.
39. Price, P., Olver, S. D., Gibbons, A. E. & Shellam, G. R. (1993) Immunology 78, 14-21.
40. Chapman, A. J., Farrell, H. E., Thomas, J. A., Papadimitriou, J. M., Garlepp, M. J., Scalzo, A. A. & Shellam, G. R. (1994) Immunology 81, 435-443.
41. Croxtall, J. D., Choudhury, Q., Newman, S. & Flower, R. J. (1996) Biochem. Pharmacol. 52, 351-356.
42. Shibutani, T., Johnson, T. M., Yu, Z. X., Ferrans, V. J., Moss, J. & Epstein, S. E. (1997) J. Clin. Invest. 100, 2054-2061.
43. Kondo, K., Xu, J. & Mocarski, E. S. (1996) Proc. Natl. Acad. Sci. USA 93, 11137-11142.
44. Sinclair, J. & Sissons, P. (1996) Intervirology 39, 293-301.
45. Soderberg-Naucler, C., Fish, K. N. & Nelson, J. A. (1997) Cell 91, 119-126.
46. Croxtall, J. D., Newman, S. P., Choudhury, Q. & Flower, R. J. (1996) Biochem. Biophys. Res. Commun. 220, 491-495.
47. Rogers, B. C., Scott, D. M., Mundin, J. & Sissons, J. G. P. (1985) J. Virol. 55, 527-532.
48. Kapasi, K. & Rice, G. P. A. (1998) J. Virol. 62, 3603-3607.
49. Iwamoto, G. K., Monick, M. M., Clark, B. D., Auron, P. E., Stinski, M. F. & Hunninghake, G. W. (1990) J. Clin. Invest. 85, 1853-1857.
50. Crump, J. W., Geist, L. J., Auron, P. E., Webb, A. C., Stinski, M. F. & Hunninghake, G. W. (1992) Am. J. Respir. Cell Mol. Biol. 6, 674-677.
51. Adams, J. C. (1997) Int. J. Biochem. Cell Biol. 29, 861-865.
52. Tuszynski, G. P. & Nicosia, R. F. (1995) BioEssays 18, 71-76.
53. Lawler, J., Sunday, M., Thibert, V., Duquette, M., George, E. L., Rayburn, H. & Hynes, R. O. (1998) J. Clin. Invest. 101, 982-992.
54. Britt, W. J. & Alford, C. A. (1996) in Fields Virology, eds. Fields, B. N., Knipe, D. M. & Howley, P. M. (Lippencott, Philadelphia), pp. 2493-2523.
55. Steingrimsson, E., Moore, K. J., Lamoreux, M. L., Ferre-D'Amare, A. R., Burley, S. K., Zimring, D. C. S., Skow, L. C., Hodgkinson, C. A., Arnheiter, H., Copeland, N. G., et al. (1994) Nat. Genet. 8, 256-263.
56. Tassabehji, M., Newton, V. E. & Read, A. P. (1994) Nat. Genet. 8, 251-255.
57. McCarthy, R. W., Frenkel, L. D., Kollarits, C. R. & Keys, M. P. (1980) Am. J. Ophthalmol. 90, 558-561.
58. Tsutsui, Y., Kashiwai, A., Kawamura, N. & Kadota, C. (1993) Am. J. Pathol. 143, 804-813.