메뉴 건너뛰기




Volumn 6, Issue 2, 2000, Pages 189-198

Mg2+-independent hairpin ribozyme catalysis in hydrated RNA films

Author keywords

Metal ions; Ribozyme; RNA catalysis; RNA films

Indexed keywords

AMMONIA; CATION; CHELATING AGENT; COBALT; EDETIC ACID; MAGNESIUM ION; MANGANESE; RIBOZYME; RNA; SPERMIDINE; SPERMINE; TERBIUM; TRACE METAL; MAGNESIUM; WATER;

EID: 0033621994     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838200991441     Document Type: Article
Times cited : (25)

References (39)
  • 2
    • 0020490656 scopus 로고
    • Dielectric studies of the binding of water to lysozyme
    • Bone S, Pethig R. 1982. Dielectric studies of the binding of water to lysozyme. J Mol Biol 157:571-575.
    • (1982) J Mol Biol , vol.157 , pp. 571-575
    • Bone, S.1    Pethig, R.2
  • 3
    • 0343551291 scopus 로고
    • The hairpin ribozyme
    • Eckstein F, Lilley DMJ, eds. Berlin, Heidelberg: Springer-Verlag
    • Burke JM. 1994. The hairpin ribozyme. In: Eckstein F, Lilley DMJ, eds. Nucleic acids and molecular biology, vol 8. Berlin, Heidelberg: Springer-Verlag. pp 105-115.
    • (1994) Nucleic Acids and Molecular Biology , vol.8 , pp. 105-115
    • Burke, J.M.1
  • 4
    • 0000402794 scopus 로고    scopus 로고
    • Structural analysis and modifications of the hairpin ribozyme
    • Eckstein F, Lilley DMJ, eds. Berlin, Heidelberg: Springer-Verlag
    • Burke JM, Butcher SE, Sargueil B. 1996. Structural analysis and modifications of the hairpin ribozyme. In: Eckstein F, Lilley DMJ, eds. Nucleic acids and molecular biology, vol 8. Berlin, Heidelberg: Springer-Verlag. pp 129-143.
    • (1996) Nucleic Acids and Molecular Biology , vol.8 , pp. 129-143
    • Burke, J.M.1    Butcher, S.E.2    Sargueil, B.3
  • 5
    • 0029563614 scopus 로고
    • Reconstitution of hairpin ribozyme activity following separation of functional domains
    • Butcher SE, Heckman JE, Burke JM. 1995. Reconstitution of hairpin ribozyme activity following separation of functional domains. J Biol Chem 270:29648-29651.
    • (1995) J Biol Chem , vol.270 , pp. 29648-29651
    • Butcher, S.E.1    Heckman, J.E.2    Burke, J.M.3
  • 6
    • 0025367254 scopus 로고
    • Self-splicing of group I introns
    • Cech TR. 1990. Self-splicing of group I introns. Annu Rev Biochem 59:543-568.
    • (1990) Annu Rev Biochem , vol.59 , pp. 543-568
    • Cech, T.R.1
  • 7
    • 0025932338 scopus 로고
    • Novel guanosine requirement for catalysis by the hairpin ribozyme
    • Chowrira BM, Berzal-Herranz A, Burke JM. 1991. Novel guanosine requirement for catalysis by the hairpin ribozyme. Nature 354: 320-322.
    • (1991) Nature , vol.354 , pp. 320-322
    • Chowrira, B.M.1    Berzal-Herranz, A.2    Burke, J.M.3
  • 8
    • 0027473887 scopus 로고
    • Ionic requirements for RNA-binding, cleavage, and ligation by the hairpin ribozyme
    • Chowrira BM, Berzal-Herranz A, Burke JM. 1993. Ionic requirements for RNA-binding, cleavage, and ligation by the hairpin ribozyme. Biochemistry 32:1088-1095.
    • (1993) Biochemistry , vol.32 , pp. 1088-1095
    • Chowrira, B.M.1    Berzal-Herranz, A.2    Burke, J.M.3
  • 9
    • 0030877619 scopus 로고    scopus 로고
    • Hammerhead ribozymes with a faster cleavage rate
    • Clouet-d'Orval B, Uhlenbeck OC. 1997. Hammerhead ribozymes with a faster cleavage rate. Biochemistry 36:9087-9092.
    • (1997) Biochemistry , vol.36 , pp. 9087-9092
    • Clouet-D'Orval, B.1    Uhlenbeck, O.C.2
  • 10
    • 0027732494 scopus 로고
    • Evidence for the role of solvated metal hydroxide in the hammerhead cleavage mechanism
    • Dahm SC, Derrick WB, Uhlenbeck OC. 1993. Evidence for the role of solvated metal hydroxide in the hammerhead cleavage mechanism. Biochemistry 32:13040-13045.
    • (1993) Biochemistry , vol.32 , pp. 13040-13045
    • Dahm, S.C.1    Derrick, W.B.2    Uhlenbeck, O.C.3
  • 11
    • 0025998488 scopus 로고
    • Role of divalent metal ions in the hammerhead RNA cleavage reaction
    • Dahm SC, Uhlenbeck OC. 1991. Role of divalent metal ions in the hammerhead RNA cleavage reaction. Biochemistry 30:9464-9469.
    • (1991) Biochemistry , vol.30 , pp. 9464-9469
    • Dahm, S.C.1    Uhlenbeck, O.C.2
  • 12
    • 0030803639 scopus 로고    scopus 로고
    • Progress toward the structure and therapeutic use of the hairpin ribozyme
    • Earnshaw DJ, Gait MJ. 1997. Progress toward the structure and therapeutic use of the hairpin ribozyme. Antisense Nucleic Acid Drug Dev 7:403-411.
    • (1997) Antisense Nucleic Acid Drug Dev , vol.7 , pp. 403-411
    • Earnshaw, D.J.1    Gait, M.J.2
  • 13
    • 0032534533 scopus 로고    scopus 로고
    • Hairpin ribozyme cleavage catalyzed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions
    • Earnshaw DJ, Gait MJ. 1998. Hairpin ribozyme cleavage catalyzed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions. Nucleic Acids Res 26:5551-5561.
    • (1998) Nucleic Acids Res , vol.26 , pp. 5551-5561
    • Earnshaw, D.J.1    Gait, M.J.2
  • 14
    • 0030920270 scopus 로고    scopus 로고
    • Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two non-exchangeable conformations
    • Esteban JA, Banerjee AR, Burke JM. 1997. Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two non-exchangeable conformations. J Biol Chem 272:13629-13639.
    • (1997) J Biol Chem , vol.272 , pp. 13629-13639
    • Esteban, J.A.1    Banerjee, A.R.2    Burke, J.M.3
  • 15
    • 0032568597 scopus 로고    scopus 로고
    • Real-time monitoring of hairpin ribozyme kinetics through base-specific quenching of fluorescein-labeled substrates
    • Esteban JA, Walter NG, Kotzorek G, Heckman JE, Burke JM. 1998. Real-time monitoring of hairpin ribozyme kinetics through base-specific quenching of fluorescein-labeled substrates. Proc Natl Acad Sci USA 95:6091-6096.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 6091-6096
    • Esteban, J.A.1    Walter, N.G.2    Kotzorek, G.3    Heckman, J.E.4    Burke, J.M.5
  • 16
    • 0032472205 scopus 로고    scopus 로고
    • Inhibition of the hammer-head ribozyme cleavage reaction by site-specific binding of Tb
    • Feig AL, Scott WG, Uhlenbeck OC. 1998. Inhibition of the hammer-head ribozyme cleavage reaction by site-specific binding of Tb. Science 279:81-84.
    • (1998) Science , vol.279 , pp. 81-84
    • Feig, A.L.1    Scott, W.G.2    Uhlenbeck, O.C.3
  • 17
    • 0027310473 scopus 로고
    • Catalytically active geometry in the reversible circularization of 'mini-monomer' RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA
    • Feldstein PA, Bruening G. 1993. Catalytically active geometry in the reversible circularization of 'mini-monomer' RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA. Nucleic Acids Res 21:1991-1998.
    • (1993) Nucleic Acids Res , vol.21 , pp. 1991-1998
    • Feldstein, P.A.1    Bruening, G.2
  • 18
    • 0023483463 scopus 로고
    • Structural and ionic requirements for self-cleavage of virusoid RNAs and trans self-cleavage of viroid RNA
    • Forster AC, Jeffries AC, Sheldon CC, Symons RH. 1987. Structural and ionic requirements for self-cleavage of virusoid RNAs and trans self-cleavage of viroid RNA. Cold Spring Harb Symp Quant Biol 52:249-259.
    • (1987) Cold Spring Harb Symp Quant Biol , vol.52 , pp. 249-259
    • Forster, A.C.1    Jeffries, A.C.2    Sheldon, C.C.3    Symons, R.H.4
  • 19
    • 0031215119 scopus 로고    scopus 로고
    • Evidence for the metal-cofactor independence of an RNA phosphodiester-cleaving DNA enzyme
    • Geyer CR, Sen D. 1997. Evidence for the metal-cofactor independence of an RNA phosphodiester-cleaving DNA enzyme. Chem Biol 4:579-593.
    • (1997) Chem Biol , vol.4 , pp. 579-593
    • Geyer, C.R.1    Sen, D.2
  • 20
    • 0031194873 scopus 로고    scopus 로고
    • A unique mechanism for RNA catalysis: The role of metal cofactors in hairpin ribozyme cleavage
    • Hampel A, Cowan JA. 1997. A unique mechanism for RNA catalysis: The role of metal cofactors in hairpin ribozyme cleavage. Chem Biol 4:513-517.
    • (1997) Chem Biol , vol.4 , pp. 513-517
    • Hampel, A.1    Cowan, J.A.2
  • 21
    • 0028657559 scopus 로고
    • Suppression of mutations in the core of the Tetrahymena ribozyme by spermidine, ethanol and by substrate stabilization
    • Hanna M, Szostak JW. 1994. Suppression of mutations in the core of the Tetrahymena ribozyme by spermidine, ethanol and by substrate stabilization. Nucleic Acids Res 22:5326-5331.
    • (1994) Nucleic Acids Res , vol.22 , pp. 5326-5331
    • Hanna, M.1    Szostak, J.W.2
  • 22
    • 0025993615 scopus 로고
    • Function of P11, a tertiary base pairing in self-splicing introns of subgroup IA
    • Jaeger L, Westhof E, Michel F. 1991. Function of P11, a tertiary base pairing in self-splicing introns of subgroup IA. J Mol Biol 221: 1153-1164.
    • (1991) J Mol Biol , vol.221 , pp. 1153-1164
    • Jaeger, L.1    Westhof, E.2    Michel, F.3
  • 24
    • 0027389356 scopus 로고
    • Self-cleaving catalytic RNA
    • Long DM, Uhlenbeck OC. 1993. Self-cleaving catalytic RNA. FASEB J 7:25-30.
    • (1993) FASEB J , vol.7 , pp. 25-30
    • Long, D.M.1    Uhlenbeck, O.C.2
  • 25
    • 0029181823 scopus 로고
    • Solid-phase enzymatic reactions. V. Comparison of catalytic properties of subtilisin and alpha-chymotrypsin in the absence of a solvent
    • Maksareva EI, Khurgin II. 1995. Solid-phase enzymatic reactions. V. Comparison of catalytic properties of subtilisin and alpha-chymotrypsin in the absence of a solvent. Bioorg Khim 21: 24-27.
    • (1995) Bioorg Khim , vol.21 , pp. 24-27
    • Maksareva, E.I.1    Khurgin, I.I.2
  • 26
    • 0032192761 scopus 로고    scopus 로고
    • The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone
    • Murray JB, Seyhan AA, Walter NG, Burke JM, Scott WG. 1998. The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone. Chem Biol 5:587-595.
    • (1998) Chem Biol , vol.5 , pp. 587-595
    • Murray, J.B.1    Seyhan, A.A.2    Walter, N.G.3    Burke, J.M.4    Scott, W.G.5
  • 27
    • 0031215134 scopus 로고    scopus 로고
    • An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis
    • Nesbitt SM, Hegg LA, Fedor MJ. 1997. An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis. Chem Biol 4:619-630.
    • (1997) Chem Biol , vol.4 , pp. 619-630
    • Nesbitt, S.M.1    Hegg, L.A.2    Fedor, M.J.3
  • 28
    • 0033525467 scopus 로고    scopus 로고
    • The internal equilibrium of the hairpin ribozyme: Temperature, ion and pH effects
    • Nesbitt SM, Erlacher HA, Fedor MJ. 1999. The internal equilibrium of the hairpin ribozyme: Temperature, ion and pH effects. J Mol Biol 286:1009-1024.
    • (1999) J Mol Biol , vol.286 , pp. 1009-1024
    • Nesbitt, S.M.1    Erlacher, H.A.2    Fedor, M.J.3
  • 29
    • 0033013494 scopus 로고    scopus 로고
    • Global structure and flexibility of hairpin ribozymes with extended terminal helices
    • Porschke D, Burke JM, Walter NG. 1999. Global structure and flexibility of hairpin ribozymes with extended terminal helices. J Mol Biol 289:799-813.
    • (1999) J Mol Biol , vol.289 , pp. 799-813
    • Porschke, D.1    Burke, J.M.2    Walter, N.G.3
  • 31
    • 0027183545 scopus 로고
    • Ribozymes: A distinct class of metalloenzymes
    • Pyle AM. 1993. Ribozymes: A distinct class of metalloenzymes. Science 261:709-714.
    • (1993) Science , vol.261 , pp. 709-714
    • Pyle, A.M.1
  • 32
    • 0032146201 scopus 로고    scopus 로고
    • Intracellular RNAcleavage by the hairpin ribozyme
    • Seyhan AA, Amaral J, Burke JM. 1998. Intracellular RNAcleavage by the hairpin ribozyme. Nucleic Acids Res 26:3494-3504.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3494-3504
    • Seyhan, A.A.1    Amaral, J.2    Burke, J.M.3
  • 34
    • 0032516471 scopus 로고    scopus 로고
    • Unusual metal ion catalysis in an acyl-transferase ribozyme
    • Suga H, Cowan JA, Szostak JW. 1998. Unusual metal ion catalysis in an acyl-transferase ribozyme. Biochemistry 37:10118-10125.
    • (1998) Biochemistry , vol.37 , pp. 10118-10125
    • Suga, H.1    Cowan, J.A.2    Szostak, J.W.3
  • 36
    • 0030969442 scopus 로고    scopus 로고
    • Real-time monitoring of hairpin ribozyme kinetics through base-specific quenching of fluorescein-labeled substrates
    • Walter NG, Burke JM. 1997. Real-time monitoring of hairpin ribozyme kinetics through base-specific quenching of fluorescein-labeled substrates. RNA 3:392-404.
    • (1997) RNA , vol.3 , pp. 392-404
    • Walter, N.G.1    Burke, J.M.2
  • 37
    • 0032522574 scopus 로고    scopus 로고
    • Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer
    • Walter NG, Hampel KJ, Brown KM, Burke JM. 1998. Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer. EMBO J 17:2378-2391.
    • (1998) EMBO J , vol.17 , pp. 2378-2391
    • Walter, N.G.1    Hampel, K.J.2    Brown, K.M.3    Burke, J.M.4
  • 38
    • 0030967825 scopus 로고    scopus 로고
    • Metal ions play a passive role in the hairpin ribozyme catalysed reaction
    • Young KJ, Gill F, Grasby JA. 1997. Metal ions play a passive role in the hairpin ribozyme catalysed reaction. Nucleic Acids Res 25: 3760-3766.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3760-3766
    • Young, K.J.1    Gill, F.2    Grasby, J.A.3
  • 39
    • 0024278258 scopus 로고
    • Enzymatic catalysis in nonaqueous solvents
    • Zaks A, Klibanov AM. 1988. Enzymatic catalysis in nonaqueous solvents. J Biol Chem 263:3194-3201.
    • (1988) J Biol Chem , vol.263 , pp. 3194-3201
    • Zaks, A.1    Klibanov, A.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.