Unusual metal ion catalysis in an acyl-transferase ribozyme

Biochemistry

Volumn 37, Issue 28, 1998, Pages 10118-10125

  Suga, Hiroaki ^a   Cowan, James A ^b   Szostak, Jack W ^c  

^a UNIVERSITY AT BUFFALO   (United States)

^b OHIO STATE UNIVERSITY   (United States)

^c MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACYLTRANSFERASE; METAL ION; PEPTIDYLTRANSFERASE; RIBOZYME;

ARTICLE; BASE PAIRING; BINDING SITE; CATALYSIS; CONFORMATIONAL TRANSITION; CRYSTALLOGRAPHY; DISSOCIATION CONSTANT; ENZYME KINETICS; PRIORITY JOURNAL; PROTEIN SYNTHESIS; REACTION ANALYSIS;

NON-PROGRAMMATIC;

ACYLTRANSFERASES; BINDING SITES; CATALYSIS; CATIONS, DIVALENT; COBALT; MAGNESIUM; MODELS, MOLECULAR; RNA, CATALYTIC;

EID: 0032516471     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980432a     Document Type: Article

References (43)

1. Duffy, T. H., and Nowak, T. (1985) Biochemistry 24, 1152-1160.
2. Jou, R., and Cowan, J. A. (1991) J. Am. Chem. Soc. 113, 6685-6686.
3. Cate, J. H., and Doudna, J. A. (1996) Structure 4, 1221-1229.
4. Cate, J. H., Gooding, A. R., Podell, E., Zhou, K., Golden, B. L., Kundrot, C. E., Cech, T. R., and Doudna, J. A. (1996) Science 273, 1678-1685.
5. Cate, J. H., Hanna, R. L., and Doudna, J. A. (1997) Nat. Struct. Biol. 4, 553-558.
6. Noller, H. F., Hoffarth, V., and Zimniak, L. (1992) Science 256, 1416-1419.
7. Hager, A. J., Pollard, J. D., and Szostak, J. W. (1996) Chem. Biol. 3, 717-725.
8. Lorsch, J. R., and Szostak, J. W. (1996) Acc. Chem. Res. 29, 103-110.
9. Lohse, P. A., and Szostak, J. W. (1996) Nature 381, 442-444.
10. Piccirilli, J. A., McConnell, T. S., Zaug, A. J., Noller, H. F., and Cech, T. R. (1992) Science 256, 1420-1424.
11. Steitz, T. A., and Steitz, J. A. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 6498-6502.
12. Pyle, A. M. (1993) Science 261, 709-714.
13. Dahm, A. C., and Uhlenbeck, O. C. (1991) Biochemistry 30, 9464-9469.
14. Dahm, A. C., Derrick, W. B., and Uhlenbeck, O. C. (1993) Biochemistry 32, 13040-13045.
15. Chowrira, B. M., Berzal-Herranz, A., and Burke, J. M. (1993) Biochemistry 32, 1088-1095.
16. Streicher, B., Westhof, E., and Schroeder, R. (1996) EMBO J. 15, 2556-2564.
17. Piccirilli, J. A., Vyle, J. S., Caruthers, M. H., and Cech, T. R. (1993) Nature 361, 85-88.
18. Kuimelis, R. G., and McLaughlin, L. W. (1996) Biochemistry 35, 5308-5317.
19. Sawata, S., Komiyama, M., and Taira, K. (1995) J. Am. Chem. Soc. 117, 2357-2358.
20. Koizumi, M., and Ohtsuka, E. (1991) Biochemistry 30, 5145-5150.
21. Zhou, D.-M., Usman, N., Wincott, F. E., Matulic-Adamic, J., Orita, M., Zhang, L.-H., Komiyama, M., Kumar, P. K. R., and Taira, K. (1996) J. Am. Chem. Soc. 118, 5862-5866.
22. Pontius, B. W., Lott, W. B., and von Hippel, P. H. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 2290-2294.
23. Smith, D., and Pace, N. R. (1993) Biochemistry 32, 5273-5281.
24. Herschlag, D., Piccirilli, J. A., and Cech, T. R. (1991) Biochemistry 30, 4844-4854.
25. Chen, Y., Li, X., and Gegenheimer, P. (1997) Biochemistry 36, 2425-2438.
26. Sugimoto, N., Kierzek, R., and Turner, D. H. (1988) Biochemistry 27, 6384-6392.
27. Sugimoto, N., Tomka, M., Kierzek, R., Bevilacqua, P. C., and Turner, D. H. (1989) Nucleic Acids Res. 17, 533-371.
28. Hampel, A., and Cowan, J. A. (1997) Chem. Biol. 4, 513-517.
29. Young, K. J., Gill, F., and Grasby, J. A. (1997) Nucleic Acids Res. 25, 3760-3766.
30. Suga, H., Lohse, P. A., and Szostak, J. W. (1998) J. Am. Chem. Soc. 120, 1151-1156.
31. Ulanovsky, L., Drouin, G., and Gilbert, W. (1990) Nature 343 190-192.
32. Pentz, L., and Thornton, E. R. (1967) J. Am. Chem. Soc. 89, 6931-6938.
33. Celander, D. W., and Cech, T. R. (1991) Science 251, 401-407.
34. Pyle, A. P., and Cech, T. R. (1991) Nature 350, 628-631.
35. Knitt, D. S., and Herschlag, D. (1996) Biochemistry 35, 1560-1570.
36. Pyle, A. M., and Green, J. B. (1994) Biochemistry 33, 2716-2725.
37. Herschlag, D., and Khosla, M. (1994) Biochemistry 33, 5291-5297.
38. Cowan, J. A. (1997) Inorganic Biochemistry: An introduction, Wiley-VCH, New York.
39. Burgess, J. (1988) Ions in solution, Ellis Horwood Ltd., New York.
40. Jencks, W. P. (1969) Catalysis in chemistry and enzymology, McGraw-Hill, New York.
41. Basolo, F., and Pearson, R. G. (1988) Mechanisms of Inorganic Reactions, John Wiley & Sons, New York.
42. Black, C. B., Huang, H.-W., and Cowan, J. A. (1994) Coord. Chem. Rev. 135/136, 165-202.
43. Black, C. B., and Cowan, J. A. (1994) J. Am. Chem. Soc. 116, 253-260.