Gene duplications in early metazoan evolution

Seminars in Cell and Developmental Biology

Volumn 10, Issue 5, 1999, Pages 523-530

  Lundin, Lars G ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

Bilateria; Cambrian explosion; Diploblasts; Gene genome duplication; Metazoa; Multicellularity; Triploblasts

Indexed keywords

ANIMALIA; BILATERIA; METAZOA; PROTOZOA; VERTEBRATA;

CELL RECEPTOR; COLLAGEN; HOMEODOMAIN PROTEIN;

ANIMAL; GENE DUPLICATION; GENETICS; GENOME; INVERTEBRATE CHORDATA; MOLECULAR EVOLUTION; PHYLOGENY; REVIEW;

ANIMALS; CHORDATA, NONVERTEBRATE; COLLAGEN; EVOLUTION, MOLECULAR; GENE DUPLICATION; GENOME; HOMEODOMAIN PROTEINS; PHYLOGENY; RECEPTORS, CYTOPLASMIC AND NUCLEAR;

EID: 0033209204     PISSN: 10849521     EISSN: None     Source Type: Journal    
DOI: 10.1006/scdb.1999.0333     Document Type: Article

References (62)

1. Ohno S, Wolf U, Atkin NB. Evolution from fish to mammals by gene duplication. Hereditas. 59:1968;169-187.
2. Ohno S. The role of gene duplication in vertebrate evolution, The Biological Basis of Medicine, 1969;109-132.
3. Ohno S. Evolution by Gene Duplication. 1970;Springer-Verlag, Berlin, Heidelberg, New York.
4. Lundin, L-G, 1989, Gene homologies and the nerve system, in Genetics of Neuropsychiatric Diseases. Wenner-Gren Internatl Symp Ser, Wetterberg, L, 43, 58. MacMillan Press, London.
5. Lundin L-G. Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse. Genomics. 16:1993;1-19.
6. Holland PWH, Garcia-Fernandez J, Williams NA, Sidow A. Gene duplications and the origins of vertebrate development. Development Suppl. 1994;125-133.
7. Katsanis N, Fitzgibbon J, Fisher EMC. Paralogy mapping: Identification of a region in the human MHC triplicated onto human chromosomes 1 and 9 allows the prediction and isolation of novel PBX and NOTCH loci. Genomics. 35:1996;101-108.
8. Spring J. Vertebrate evolution by interspecific hybridisation - are we polyploid? FEBS Lett. 400:1997;2-8.
9. Ohno S. The notion of the Cambrian pananimalia genome and a genomic difference that separated vertebrates from invertebrates. Prog Mol Subcell Biol. 21:1998;97-117.
10. Patthy L. Protein Evolution by Exon-Shuffling. 1995;Springer-Verlag, Heidelberg.
11. Moran JV, De Berardinis RJ, Kazazian HH. Exon shuffling by L1 retrotransposition. Science. 283:1999;1530-1534.
12. Doolittle RF. The genealogy of some recently evolved vertebrate proteins. Trends Biochem Sci. 10:1985;233-237.
13. Keese PK, Gibbs A. Origin of genes: Big bang or continuous creation? Proc Natl Acad Sci USA. 89:1992;9489-9493.
14. Miklos GLG, Campbell HD. The evolution of protein domains and the organizational complexities of metazoans. Curr Opin Genet Dev. 2:1992;902-906.
15. Shenk MA, Steele RE. A molecular snapshot of the metazoan 'Eve'. Trends Biochem Sci. 18:1993;459-463.
16. Müller WEG. Origin of Metazoa: sponges as living fossils. Naturwissenschaften. 85:1998;11-25.
17. Ono K, Suga H, Iwabe N, Kuma K, Miyata T. Multiple protein tyrosine phosphatases in sponges and explosive gene duplication in the early evolution of animals before the parazoan-eumetazoan split. J Mol Evol. 48:1999;654-662.
18. Suga H, Koyanagi M, Hoshiyama D, Ono K, Iwabe N, Kuma K, Miyata T. Extensive gene duplication in the early evolution of animals before the parazoan-eumetazoan split demonstrated by G proteins and protein tyrosine kinases from sponge and Hydra. J Mol Evol. 48:1999;646-653.
19. Aguinaldo AMA, Turbeville JM, Linford LS, Rivera MC, Garey JR, Raff RA, Lake JA. Evidence for a clade of nematodes, arthropods and other moulting animals. Nature. 387:1997;489-493.
20. Balavoine G. The early emergence of platyhelminths is contradicted by the agreement between 18S rRNA and Hox genes data. C R Acad Sci III, Paris. 320:1997;83-94.
21. Balavoine G, Adoutte A. One or three Cambrian radiations? Science. 280:1998;397-398.
22. Runnegar B. The Cambrian explosion: Animals of fossils? J Geol Soc Aust. 29:1982;395-411.
23. Conway Morris S. Burgess shale faunas and the Cambrian explosion. Science. 246:1989;339-346.
24. Bell MA. Origin of metazoan phyla: Cambrian explosion or proterozoic slow burn. Trends Ecol Evol. 12:1997;1-2.
25. Fortey RA, Briggs DEG, Wills MA. The Cambrian evolutionary 'explosion' recalibrated. BioEssays. 19:1997;429-434.
26. Kirschvink JL, Ripperdan RL, Evans DA. Evidence for a large-scale reorganization of early Cambrian continental masses by inertial interchange true polar wander. Science. 277:1997;541-545.
27. Cooper A, Fortey R. Evolutionary explosions and the phylogenetic fuse. Trends Ecol Evol. 13:1998;151-156.
28. Thomas ALR. The breath of life - did increased oxygen levels trigger the Cambrian Explosion? Trends Ecol Evol. 12:1997;44-45.
29. Kerr RA. Did an ancient deep freeze nearly doom life? Science. 281:1998;1259-1261.
30. Ohno S. The reason for as well as the consequence of the Cambrian explosion in animal evolution. J Mol Evol. 44:1997;23-27.
31. Bird AP. Gene number, noise reduction and biological complexity. Trends Genet. 11:1995;94-100.
32. Simmen MW, Leitgeb S, Clark VH, Jones SJM, Bird A. Gene number in an invertebrate chordate, Ciona intestinalis. Proc Natl Acad Sci USA. 95:1998;4437-4440.
33. Wolfe KH, Shields DC. Molecular evidence for an ancient duplicati on of the entire yeast genome. Nature. 387:1997;708-713.
34. Meagher RB, McKinney EC, Vitale AV. The evolution of new structures. Trends Genet. 15:1999;278-284.
35. Suga H, Kuma K, Iwabe N, Nikoh N, Ono K, Koyanagi M, Hoshiyama D, Miyata T. Intermittent divergence of the protein tyrosine kinase family during animal evolution. FEBS Lett. 412:1997;540-546.
36. Koyanagi M, Suga H, Hoshiyama D, Ono K, Iwabe N, Kuma K, Miyata T. Ancient gene duplication and domain shuffling in the animal cyclic nucleotide phosphodiesterase family. FEBS Lett. 436:1998;323-328.
37. Koyanagi M, Ono K, Suga H, Iwabe N, Miyata T. Phospholipase C cDNAs from sponge and hydra: antiquity of genes involved in the inositol phospholipid signaling pathway. FEBS Lett. 439:1998;66-70.
38. Iwabe N, Kuma K, Miyata T. Evolution of gene families and relationship with organismal evolution: Rapid divergence of tissue-specific genes in the early evolution of chordates. Mol Biol Evol. 13:1996;483-493.
39. Hanks SK, Hunter T. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J. 9:1995;576-596.
40. Mounier N, Gouy M, Mouchiroud D, Prudhomme JC. Insect muscle actins differ distinctly from invertebrate and vertebrate cytoplasmic actins. J Mol Evol. 34:1992;406-415.
41. Ohno S. The notion of the Cambrian pananimalia genome. Proc Natl Acad Sci USA. 93:1996;8475-8478.
42. Davidson EH, Peterson KJ, Cameron RA. Origin of bilaterian body plans: evolution of developmental regulatory mechanisms. Science. 270:1995;1319-1325.
43. Raff RA. The Shape of Life. Genes, Development, and the Evolution of Animal Form. 1996;University of Chicago Press, Chicago.
44. Lowe CJ, Wray GA. Radical alterations in the roles of homeobox genes during echinoderm evolution. Nature. 389:1997;718-721.
45. Müller WE, Wagner C, Coutinho CC, Borojevic R, Steffen R, Koziol C. Sponges (Porifera) molecular model systems to study cellular differentiation in Metazoa. Prog Mol Subcell Biol. 21:1998;71-95.
46. Exposito J-Y, Garrone R. Characterization of a fibrillar collagen gene in sponges reveals the early evolutionary appearance of two collagen gene families. Proc Natl Acad Sci USA. 87:1990;6669-6673.
47. Boute N, Exposito JY, Boury-Esnault N, Vacelet J, Noro N, Miyazaki K, Yoshizato K, Garrone R. Type IV collagen in sponges, the missing link in basement membrane ubiquity. Biol Cell. 88:1996;37-44.
48. Garrone R. Evolution of metazoan collagens. Prog Mol Subcell Biol. 21:1998;119-139.
49. Garrone R. Origine des matrices extracellulaires collagéniques. Bull Soc Zool France. 120:1995;209-216.
50. Kurz EM, Holstein TW, Petri BM, Engel J, David CN. Mini-collagens in hydra nematocytes. J Cell Biol. 115:1991;1159-1169.
51. Gellon G, McGinnis W. Shaping animal body plans in development an d evolution by modulation of Hox expression patterns. BioEssays. 20:1998;116-125.
52. Degnan BM, Degnan SM, Giusti A, Morse DE. A hox/hom homeobox gene in sponges. Gene. 155:1995;175-177.
53. Schierwater B, Kuhn K. Homology of Hox genes and the zootype concept in early metazoan evolution. Mol Phylogenet Evol. 9:1998;375-381.
54. Kuhn K, Streit B, Schierwater B. Homeobox genes in the cnidarian Eleutheria dichotoma: Evolutionary implications for the origin ofAntennapedia -class (HOM/Hox) genes. Mol Phylogenet Evol. 6:1996;30-38.
55. Finnerty JR, Martindale MQ. The evolution of the Hox cluster: insights from outgroups. Curr Opin Genet Dev. 8:1998;681-687.
56. Martinez DE, Bridge D, Masuda-Nakagawa LM, Cartwright P. Cnidarian homeoboxes and the zootype. Nature. 393:1998;748-749.
57. Brooke NM, Garcia-Fernàndez J, Holland PWH. The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster. Nature. 392:1998;920-922.
58. de Rosa R, Grenier JK, Andreeva T, Cook CE, Adoutte A, Akam M, Carroll SB, Balavoine G. Hox genes in brachiopods and priapulids and protostome evolution. Nature. 399:1999;772-776.
59. Mann RS, Chan S-K. Extra specificity from extradenticle: the pertnership between HOX and PBX/EXD homeodomain proteins. Trends Genet. 12:1996;258-262.
60. Kuhn K, Streit B, Schierwater B. Isolation of Hox genes from the scyphozoan Cassiopeia xamachana: implications for the early evolution of Hox genes. J Exp Zool. 285:1999;63-75.
61. Escriva H, Safi R, Hänni C et al. Ligand binding was acquired during evolution of nuclear receptors. Proc Natl Acad Sci USA. 94:1997;6803-6808.
62. Laudet V. Evolution of the nuclear receptor superfamily: early diversification from an ancestral orphan receptor. J Mol Endocrinol. 19:1997;207-226.