Extensive gene duplication in the early evolution of animals before the parazoan-eumetazoan split demonstrated by G proteins and protein tyrosine kinases from sponge and hydra

Journal of Molecular Evolution

Volumn 48, Issue 6, 1999, Pages 646-653

  Suga, Hiroshi ^a   Koyanagi, Mitsumasa ^a   Hoshiyama, Daisuke ^a   Ono, Kanako ^a   Iwabe, Naoyuki ^a   Kuma, Kei Ichi ^a   Miyata, Takashi ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Cambrian explosion; G protein; Gene duplication; Sponge; Tyrosine kinase

Indexed keywords

COMPLEMENTARY DNA; GUANINE NUCLEOTIDE BINDING PROTEIN; PROTEIN TYROSINE KINASE;

ARTICLE; CELL COMMUNICATION; COELENTERATE; DNA DETERMINATION; EVOLUTION; GENE DUPLICATION; GENETIC ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; RNA SEQUENCE; SEQUENCE ANALYSIS; SPONGE (PORIFERA); UNINDEXED SEQUENCE;

AMINO ACID SUBSTITUTION; ANIMALS; EVOLUTION, MOLECULAR; FUNGI; GENE DUPLICATION; GTP-BINDING PROTEINS; HUMANS; HYDRA; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANTS; PORIFERA; PROTEIN-TYROSINE KINASES; VARIATION (GENETICS);

EID: 0033035138     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006508     Document Type: Article

References (34)

1. Adachi J, Hasegawa M (1992) Computer science monographs, No. 27, MOLPHY: Programs for molecular phylogenetics. I. PROTML: Maximum likelihood inference of protein phylogeny. Institute of Statistical Mathematics, Tokyo
2. Berger MP, Munson PJ (1991) A novel randomised iterative strategy for aligning multiple protein sequences. CABIOS 7:479-484
3. Birnbaumer L, Abramowitz J, Brown AM (1990) Receptor-effector coupling by G proteins. Biochim Biophys Acta 1031:163-224
4. Conway Morris S (1993) The fossil record and the early evolution of the Metazoa. Nature 361:219-225
5. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791
6. Frohman MA, Dush MK, Martin GR (1988) Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA 85: 8998-9002
7. Hanks SK, Quinn AM, Hunter T (1988) The protein kinase family: Conserved features and deduced phylogeny of the catalytic domains. Science 241:42-52
8. Hepler JR, Gilman AG (1992) G proteins. Trends Biochem Sci 17: 383-387
9. Hoshiyama D, Suga H, Iwabe N, Koyanagi M, Nikoh N, Kuma K, Matsuda F. Honjo T, Miyata T (1998) Sponge Pax cDNA related to Pax-2/5/8 and ancient gene duplications in the Pax family. J Mol Evol 47:640-648
10. Iwabe N, Kuma K, Miyata T (1996) Evolution of gene families and relationship with organismal evolution: Rapid divergence of tissue-specific genes in the early evolution of chordales. Mol Biol Evol 13:483-493
11. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism III. Academic Press, New York, pp 21-132
12. Kishino H, Miyata T, Hasegawa M (1990) Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J Mol Evol 30:151-160
13. Koyanagi M, Suga H, Hoshiyama D, Ono K, Iwabe N, Kuma K, Miyata T (1998a) Ancient gene duplication and domain shuffling in animal cyclic nucleotide phosphodiesterase family. FEBS Lett 436: 323-328
14. Koyanagi M, Ono K, Suga H, Iwabe N, Miyata T (1998b) Phospholipase C cDNAs from sponge and hydra: Antiquity of genes involved in the inositol phospholipid signaling pathway. FEBS Lett 439:66-70
15. Kurasawa Y, Numata O, Katoh M, Hirano H, Chiba J, Watanabe Y (1992) Identification of Tetrahymena 14-nm filament-associated protein as elongation factor 1α. Exp Cell Res 203:251-258
16. Mansouri A, Hallonet M, Gruss P (1996) Pax genes and their roles in cell differentiation and development. Curr Opin Genet Dev 8:851-857
17. Margulis L, Schwartz KV (1988) Five kingdoms, 2nd ed. W.H. Freeman, New York
18. Miyata T, Kuma K, Iwabe N, Nikoh N (1994) A possible link between molecular evolution and tissue evolution demonstrated by tissue specific genes. Jpn J Genet 69:473-480
19. Needleman SB, Wunsch CD (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 48:443-453
20. Nikoh N, Iwabe N, Kuma K, Ohno M, Sugiyama T, Watanabe Y, Yasui K, Shicui Z, Hori K, Shimura Y, Miyata T (1997) An estimate of divergence time of Parazoa and Eumetazoa and that of Cephalochordata and Vertebrata by aldolase and triose phosphate isomerase clocks. J Mol Evol 45:97-106
21. Numata O, Takemasa T, Takagi T, Hirono M, Hirono H, Chiba J, Watanabe Y (1991) Tetrahymena 14-nm filament-forming protein has citrate synthase activity. Biochem Biophys Res Commun 174: 1028-1034
22. Ono K, Suga H, Iwabe N, Kuma K, Miyata T (1999) Multiple protein tyrosine phosphatases in sponges and explosive gene duplication in the early evolution of animals before the Parazoan-Eumetazoan split. J Mol Evol 48:654-662
23. Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
24. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: A laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
25. Seimiya M, Ishiguro H, Miura K, Watanabe Y, Kurosawa Y (1994) Homeobox-containing genes in the most primitive metazoa, the sponges. Eur J Biochem 221:219-225
26. Simon MI, Strathmann MP, Gautam N (1991) Diversity of G proteins in signal transduction. Science 252:802-808
27. Singh R, Green MR (1993) Sequence-specific binding of transfer RNA by glyceraldehyde-3-phosphate dehydrogenase. Science 259:265-268
28. St-Onge L, Sora-Pineda B, Chowdhury K, Mansouri A, Gruss P (1997) Pax6 is required for differentiation of glucagon-producing α-cells in mouse pancreas. Nature 387:406-409
29. Strachan T, Read AP (1994) PAX genes. Curr Opin Genet Dev 4:427-438
30. Suga H, Kuma K, Iwabe N, Nikoh N, Ono K, Koyanagi M, Hoshiyama D, Miyata T (1997) Intermittent divergence of the protein tyrosine kinase family during animal evolution. FEBS Lett 412:540-546
31. van der Geer P, Hunter T, Lindberg RA (1994) Receptor protein-tyorosine kinases and their signal transduction pathways. Annu Rev Cell Biol 10:251-337
32. Wistow G (1993) Lens crystallins: Gene recruitment and evolutionary dynamism. Trends Biochem Sci 18:301-306
33. Yang F, Demma M, Warren V, Dharmawardhane S, Condeelis J (1990) Identification of an actin-binding protein from Dictyostelium as elongation 1α. Nature 347:494-496
34. Zhang R, Yatsuki H, Kusakabe T, Iwabe N, Miyata T, Imai T, Yashida M, Hori K (1995) Structures of cDNA encoding the muscle-type and non muscle-type isozymes of lamprey fructose bisphosphate aldolase and the evolution of aldolase genes. J Biochem 117:545-553