The specificity of vesicle trafficking: Coat proteins and SNAREs

Plant Cell

Volumn 11, Issue 4, 1999, Pages 629-641

  Sanderfoot, Anton A ^a   Raikhel, Natasha V ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0033117122     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.11.4.629     Document Type: Article

References (108)

1. Aalto, M.K., Ronne, H., and Keranen, S. (1993). Yeast syntaxins Ssolp and Sso2p belong to a family of related membrane proteins that function in vesicular transport. EMBO J. 12, 4095-4104.
2. Advani, R.J., Bae, H.-R., Bock, J.B., Chao, D.S., Doung, Y.-C., Prekeris, R., Yoo, J.-S., and Scheller, R.H. (1998). Seven novel mammalian SNARE proteins localize to distinct membrane compartments. J. Biol. Chem. 273, 10317-10324.
3. Ahmed, S.U., Bar-Peled, M., and Raikhel, N.V. (1997). Cloning and subcellular location of an Arabidopsis receptor-like protein that shares common features with protein-sorting receptors of eukaryotic cells. Plant Physiol. 114, 325-336.
4. Aridor, M., and Balch, W.E. (1996). Principles of selective transport: Coat complexes hold the key. Trends Cell Biol. 6, 315-320.
5. Banfield, D.K., Lewis, M.J., and Pelham, H.R. (1995). A SNARE-like protein required for traffic through the Golgi complex. Nature 375, 806-809.
6. Bar-Peled, M., and Raikhel, N.V. (1997). Characterization of AtSEC12 and AtSAR1. Proteins likely involved in endoplasmic reticulum and Golgi transport. Plant Physiol. 114, 315-324.
7. Bassham, D.C., and Raikhel, N.V. (1997). Molecular aspects of vacuole biogenesis. Adv. Bot. Res. 25, 43-58.
8. Bassham, D.C., and Raikhel, N.V. (1998). An Arabidopsis Vps45p homolog implicated in protein transport to the vacuole. Plant Physiol. 117, 407-415.
9. Battey, N.H., James, N.C., Greenland, A.J., and Brownlee, C. (1999). Exocytosis and endocytosis. Plant Cell 11, 643-659.
10. Becherer, K.A., Reider, S.E., Emr, S.D., and Jones, E.W. (1996). Novel syntaxin homologue, Pep12p, required for the sorting of lumenal hydrolases to the lysosome-like vacuole of yeast. Mol. Biol. Cell 7, 579-594.
11. Bednarek, S.Y., and Raikhel, N.V. (1992). Intracellular trafficking of secretory proteins. Plant Mol. Biol. 20, 133-150.
12. Beevers, L. (1996). Clathrin-coated vesicles in plants. Int. Rev. Cytol. 167, 1-35.
13. Beevers, L., and Raikhel, N.V. (1998). Transport to the vacuole: Receptors and trans elements. J. Exp. Bot. 49, 1271-1279.
14. Bennet, M.K., Garcia-Arras, J.E., Elferink, K., Peterson, K., Fleming, A.M., Hazuka, C.D., and Scheller, R.H. (1993). The syntaxin family of vesicular transport receptors. Cell 74, 863-873.
15. Bock, J.B., Lin, R.C., and Scheller, R.H. (1996). A new syntaxin family member implicated in targeting of intracellular transport vesicles. J. Biol. Chem. 271, 17961-17965.
16. Bock, J.B., Klumperman, J., Davanger, S., and Scheller, R.H. (1997). Syntaxin 6 functions in frans-Golgi network vesicle trafficking. Mol. Biol. Cell 8, 1261-1271.
17. Brennwald, P., Kearns, B., Champion, K., Keränen, S., Bankaitis, V., and Novick, P. (1994). Sec9 is a 3NAP-25-like component of a yeast SNARE complex that may be the effector of Sec4 function in exocytosis. Cell 79, 245-258.
18. Burd, C.G., Peterson, M., Cowles, C.R., and Emr, S.D. (1997). A novel Sec18p/NSF-dependent complex required for Golgi-to-endosome transport in yeast. Mol. Biol. Cell 8, 1089-1104.
19. Cao, X., Ballew, N., and Barlowe, C. (1996). Initial docking of ER-derived vesicles requires Uso1p and Ypt1p but is independent of SNARE proteins. EMBO J. 17, 2156-2165.
20. Cooper, A.A., and Stevens, T.H. (1996). Vps10p cycles between the late-Golgi and prevacuolar compartments in its function as the sorting receptor for multiple yeast vacuolar hydrolases. J. Cell Biol. 133, 529-542.
21. Darsow, T., Rieder, S.E., and Emr, S.D., (1997). A multispecificity syntaxin, Vam3p, essential for autophagic and biosynthetic protein transport to the vacuole. J. Cell Biol. 138, 517-529.
22. da Silva Conceição, A., Marty-Mazars, D., Bassham, D.C., Sanderfoot, A.A., Marty, F., and Raikhel, N.V. (1997). The syntaxin homolog AtPEP12p resides on a late post-Golgi compartment in plants. Plant Cell 9, 571-582.
23. Dell'Angelica, E.C., Klumperman, J., Stoorvogel, W., and Bonifacino, J.S. (1998). Association of the AP-3 adaptor complex with clathrin. Science 280, 431-434.
24. Di Sansebastiano, G.P., Paris, N., Marc-Martin, S., and Neuhaus, J.M. (1998). Specific accumulation cf GFP in a non-acidic vacuolar compartment via a C-terminal propeptide-mediated sorting pathway. Plant J. 15, 449-457.
25. Eakle, K.A., Berstein, M., and Emr, S.D. (1988). Characterization of a component of the yeast secretion machinery: Identification of the SEC18 gene product. Mol. Cell. Biol. 8, 4098-4109.
26. Fischer von Mollard, G., and Stevens, T.H. (1998). A human homolog can functionally replace the yeast vesicle associated SNARE Vti1p in two vesicle transport pathways. J. Biol. Chem. 273, 2624-2630.
27. Fischer von Mollard, G., Nothwehr, S.F., and Stevens, T.H. (1997). The yeast v-SNARE Vti1p mediates two vesicle transport pathways through interactions with the t-SNAREs Sed5p and Pep12p. J. Cell Biol. 137, 1511-1524.
28. Glick, B.S., Elston, T., and Oster, G. (1997). A cisternal maturation mechanism can explain the asymmetry of the Golgi stack. FEBS Lett. 414, 177-181.
29. Griffiths, G., and Gruenberg, J. (1991). The arguments for preexisting early and late endosomes. Trends Cell Biol. 1, 5-9.
30. Grindstaff, K.K., Yeaman, C., Anandasabapathy, N., Hsu, S.-C., Rodriguez-Boulan, E., Scheller, R.H., and Nelson, W.J. (1998). Seo6/8 complex is recruited to cell-cell contacts and specifies transport vesicle delivery to the basal-lateral membrane in epithelial cells. Cell 93, 731-740.
31. Hay, J.C., and Scheller, R.H. (1997). SNAREs and NSF in targeted membrane fusion. Curr. Opin. Cell Biol. 9, 505-512.
32. Hay, J.C., Hirling, H., and Scheller, R.H. (1996). Mammalian vesicle trafficking proteins of the endoplasmic reticulum and Golgi apparatus. J. Biol. Chem. 271, 5671-5679.
33. Hay, J.C., Chao, D.S., Kuo, C.S., and Scheller, R.H. (1997). Protein interactions regulating vesicle transport between the endoplasmic reticulum and Golgi apparatus in mammalian cells. Cell 89, 149-158.
34. Herman, E.M., and Larkins, B.A. (1999). Protein storage bodies and vacuoles. Plant Cell 11, 601-613.
35. Hohl, I., Robinson, D., Chrispeels, M., and Hinz, G. (1996). Transport of storage proteins to the vacuole is mediated by vesicles without a clathrin coat. J. Cell Sci. 109, 2539-2550.
36. Holthuis, J.C., Nichols, B.J., Dhruvakumar, S., and Pelham, H.R. (1998a). Two syntaxin homologues in the TGN/endosomal system of yeast. EMBO J. 17, 113-126.
37. Holthuis, J.C., Nichols, B.J., and Pelham, H.R. (1998b). The syntaxin Tlg1p mediates trafficking of chitin synthase III to polarized growth site in yeast. Mol. Biol. Cell 9, 3383-3397.
38. Horazdovsky, B.F., Busch, G.R., and Emr, S.D. (1994). VPS21 encodes a rab5-like GTP binding protein that is required for the sorting of yeast vacuolar proteins. EMBO J. 13, 1297-1309.
39. Ikonen, E., Tagaya, M., Ullrich, O., Montcucco, C., and Simons, K. (1995). Different requirements for NSF, SNAP, and Rab proteins in apical and basolateral transport in MDCK cells. Cell 81, 571-580.
40. Kirchhausen, T., Bonifacino, J.S., and Riezman, H. (1997). Linking cargo to vesicle formation: Receptor tail interactions with coat proteins. Curr. Opin. Cell Biol. 9, 488-495.
41. Kirsch, T., Paris, N., Butler, J.M., Beevers, L., and Rogers, J.C. (1994). Purification and initial characterization of a potential plant vacuolar targeting receptor. Proc. Natl. Acad. Sci. USA 91, 3403-3407.
42. Klumperman, J., Kuliawat, R., Griffith, J.M., Geuze, H.J., and Arvan, P. (1998). Mannose-6-phosphate receptors are sorted from immature secretory granule via adaptor protein AP-1, clathrin, and syntaxin 6-positive vesicles. J. Cell Biol. 141, 359-371.
43. Kornfeld, S. (1992). Structure and function of the mannose-6-phosphate/insulin like growth factor II receptors. Annu. Rev. Biochem. 61, 307-330.
44. Lauber, M.H., Waizenegger, I., Steinmann, T., Schwarz, H., Mayer, U., Hwang, I., Lukowitz, W., and Jürgens, G. (1997). The Arabidopsis KNOLLE protein is a cytokinesis-specific syntaxin. J. Cell Biol. 139, 1485-1493.
45. Lee, H.-I., Gal, S., Newman, T.C., and Raikhel, N.V. (1993). The Arabidopsis endoplasmic reticulum retention receptor functions in yeast. Proc. Natl. Acad. Sci. USA 90, 11433-11437.
46. Lewis, M.J., and Pelham, H.R.B. (1990). A human homolog of the yeast HDEL receptor. Nature 348, 162-163.
47. Lewis, M.J., Rayner, J.C., and Pelham, H.R. (1997). A novel SNARE complex implicated in vesicle fusion at the endoplasmic reticulum. EMBO J. 16, 3017-3024.
48. Low, S.H., Chapin, S.J., Weimbs, T., Kömüves, L.G., Bennet, M.K., and Mostov, K.E. (1996). Differential localization of syntaxin isoforms in polarized Madin-Darby canine kidney cells. Mol. Biol. Cell 7, 2007-2018.
49. Lukowitz, W., Mayer, U., and Jürgens, G. (1996). Cytokinesis in the Arabidopsis embryo involves the syntaxin-related KNOLLE gene product. Cell 84, 61-71.
50. Malhotra, V., Orci, L., Glick, B.S., Block, M.R., and Rothman, J.E. (1988). Role of an N-ethylmaleimide-sensitive transport component in promoting fusion of transport vesicle with cisternae of the Golgi stack. Cell 54, 221-227.
51. Marcusson, E.G., Horazdovsky, B.F., Cereghino, J.L., Gharakhanian, E., and Emr, S.D. (1994). The sorting receptor for yeast vacuolar carboxypeptidase Y is encoded by the VPS10 gene. Cell 77, 579-586.
52. Marty, F. (1999). Plant vacuoles. Plant Cell 11, 587-599.
53. Mascarenhas, J.P. (1993). Molecular mechanisms of pollen tube growth and differentiation. Plant Cell 5, 1303-1314.
54. Matsuoka, K., Orci, L., Amherdt, S.Y., Bednarek, S.Y., Hamamoto, S., Schekman, R., and Yeung, T. (1998). COPII-coated vesicle formation reconstituted with purified coat proteins and chemically defined liposomes. Cell 93, 263-275.
55. McMahon, H.T., and Sudhof, T.C. (1995). Synaptic core complex of synaptobrevin, syntaxin, and SNAP25 forms high affinity α-SNAP binding site. J. Biol. Chem. 270, 2213-2217.
56. McNew, J.A., Sogaard, M., Lampen, N.M., Machida, S., Ye, R.R., Lacomis, L., Tempst, P., Rothman, J.E., and Sollner, T.H. (1997). Ykt6p, a prenylated SNARE essential for endoplasmic reticulum-Golgi transport. J. Biol. Chem. 272, 17776-17783.
57. Newman, A.P., Shim, J., and Ferro-Novick, S. (1990). BET1, BOS1, and SEC22 are members of a group of interacting yeast genes required for transport from the endoplasmic reticulum to the Golgi complex. Mol. Cell. Biol. 10, 3405-3414.
58. Nichols, B.J., Ungermann, C., Pelham, H.R.B, Wickner, W.T., and Haas, A. (1997). Homotypic vacuolar fusion mediated by t- and v-SNAREs. Nature 387, 199-202.
59. Orci, L., Stamnes, M., Ravazzola, M., Amherdt, M., Perrelet, A., Sollner, T.H., and Rothman, J.E. (1997). Bidirectional transport by distinct populations of COPI-coated vesicles. Cell 90, 335-349.
60. Orci, L., Perrelet, A., and Rothman, J.E. (1998). Vesicles on a string: Morphological evidence for processive transport within the Golgi stack. Proc. Natl. Acad. Sci. USA 95, 2279-2283.
61. Palme, K., Diefenthal, T., Vingron, M., Sander, C., and Schell, J. (1992). Molecular cloning and structural analysis of genes from Zea mays (L.) coding for members of the ras-related ypt gene family. Proc. Natl. Acad. Sci. USA 89, 787-791.
62. Panek, H.R., Stepp, J.D., Engle, H.M., Marks, K.M., Tan, P.K., Lemmon, S.K., and Robinson, J.C. (1997). Supressors of YCK-encoded yeast casein kinase 1 deficiency define the four subunits of a novel clathrin AP-like complex. EMBO J. 16, 4194-4204.
63. Paris, N., Stanley, C.M., Jones, R.L., and Rogers, J.C. (1996). Plant cells contain two functionally distinct vacuolar compartments. Cell 85, 563-572.
64. Paris, N., Rogers, S.W., Jiang, L., Kirsch, T., Beevers, L., Phillips, T.E., and Rogers, J.C. (1997). Molecular cloning and further characterization of a probable plant vacuolar sorting receptor. Plant Physiol. 115, 29-39.
65. Patel, S.K., Indig, F.E., Olivieri, N., Levine, N.D., and Latterich, M. (1998). Organelle membrane fusion: A novel function for the syntaxin homolog Ufe1p in ER membrane fusion. Cell 92, 611-620.
66. Pelham, H.R.B. (1998). Getting through the Golgi complex. Trends Cell Biol. 8, 45-49.
67. Pevsner, J., Hsu, S.C., Hyde, P.S., and Scheller, R.H. (1996). Mammalian homologs of yeast vacuolar protein sorting (vps) genes implicated in Golgi-to-lysosome trafficking. Gene 183, 7-14.
68. Piper, R.C., Whitters, E.A., and Stevens, T.H. (1994). Yeast Vps45p is a Sec1p-like protein required for consumption of vacuole-targeted, post-Golgi transport vesicles. Eur. J. Cell Biol. 65, 305-318.
69. Protopopov, V., Govindan, B., Novick, P., and Gerst, J.E. (1993). Homologs of the synaptobrevin/VAMP pathway of synaptic vesicle proteins function in the late secretory pathway in S. cerevisiae. Cell 74, 855-861.
70. Rabouille, C., Kondo, H., Newman, R., Hui, N., Freemont, P., and Warren, G. (1998). Syntaxin 5 is a common component of the NSF- and p97-mediated reassembly pathways of Golgi cisternae from mitotic Golgi fragments in vitro. Cell 92, 603-610.
71. Rieder, S.E., and Emr, S.D. (1997). A novel RING finger protein complex essential for a late step in protein transport to the yeast vacuole. Mol. Cell. Biol. 8, 2307-2327.
72. Robinson, D.G., Hinz, G., and Holstein, S.E.H. (1998). The molecular characterization of transport vesicles. Plant Mol. Biol. 38, 49-76.
73. Rothman, J.E., and Sollner, T.H. (1997). Throttle and dampers: Controlling the engine of membrane fusion. Science 276, 1212-1213.
74. Rowe, T., Dascher, C., Bannykh, S., Plutner, H., and Balch, W.E. (1998). Role of vesicle-associated syntaxin 5 in the assembly of pre-Golgi intermediates. Science 279, 696-700.
75. Sacher, M., Jiang, Y., Barrowman, J., Scarpa, A., Burston, J., Zhang, L., Schieltz, D., Yates, J.R., Abeliovich, H., and Ferro-Novick, S. (1998). TRAPP, a highly conserved novel complex on the cis-Golgi that mediates vesicle docking and fusion. EMBO J. 9, 2494-2503.
76. Sanderfoot, A.A., Ahmed, S.U., Marty-Mazars, D., Rapoport, I., Kirchhausen, T. Marty, F., and Raikhel, N.V. (1998). A putative vacuolar cargo receptor partially colocalizes with AtPEP12p on a prevacuolar compartment in Arabidopsis roots. Proc. Natl. Acad. Sci. USA 95, 9920-9925.
77. Sato, M.H., Nakamura, N., Ohsumi, Y., Kouchi, H., Kondo, M., Hara-Nishimura, I., Nishimura, M., and Wada, Y. (1997). The AtVAM3 encodes a syntaxin-related molecule implicated in vacuolar assembly in Arabidopsis thaliana. J. Biol. Chem. 272, 24530-24535.
78. Sato, Y., Matsuoka, K., and Nakamura, K. (1997). A tobacco cDNA encoding a homolog of N-ethylmaleimide sensitive fusion (NSF) protein. Plant Physiol. 113, 1464.
79. Schekman, R., and Orci, L. (1996). Coat proteins and vesicle budding. Science 271, 1526-1533.
80. Seaman, M.N., Marcusson, E.G., Cereghino, J.L., and Emr, S.D. (1997). Endosome to Golgi retrieval of the vacuolar protein sorting receptor, Vps10p, requires the function of the VPS29, VPS30, and VPS35 gene products. J. Cell Biol. 137, 79-92.
81. Semenza, J.C., Hardwick, K.G., Dean, N., and Pelham, H.R.B. (1990). ERD2, a yeast gene required for the receptor-mediated retrieval of lumenal ER proteins from the secretory pathway. Cell 61, 1349-1357.
82. Shimada, T., Kuroyanagi, M., Nishimura, M., and Hara-Nishimura, I. (1997). A pumpkin 72-kDa membrane protein of precursor-accumulating vesicles has characteristics of a vacuolar sorting receptor. Plant Cell Physiol. 38, 1414-1420.
83. Simons, K., and Ikonen, E. (1997). Functional rafts in cell membranes. Nature 387, 569-572.
84. Simpson, F., Peded, A.A., Christopoulou, L., and Robinson, M.S. (1997). Characterization of the adaptor-related protein complex, AP-3. J. Cell Biol. 137, 835-845.
85. Sogaard, M., Tani, K., Ye, R.R., Geromanos, S., Tempst, P., Kirchhausen, T., Rothman, J.E., and Sollner, T. (1994). A rab protein is required for the assembly of SNARE complexes in the docking of transport vesicles. Cell 78, 937-948.
86. Steegmaier, M., Yang, B., Yoo, J.-S., Huang, B., Shen, M., Yu, S., Luo, Y., and Scheller, R.H. (1998). Three novel proteins of the syntaxin/SNAP-25 family. J. Biol. Chem. 273, 34171-34179.
87. Stepp, J.D., Haung, K., and Lemmon, S.K. (1997). The yeast adaptor protein complex AP-3 is essential for the efficient delivery of alkaline phosphatase by the alternate pathway to the vacuole. J. Cell Biol. 139, 1761-1774.
88. Stoorvogel, W., Strous, G.J., Geuze, H.J., Oorschot, V., and Schwartz, A.L. (1991). Late endosomes derive from early endosomes by maturation. Cell 65, 417-427.
89. Swanson, S.J., Bethke, P.C., and Jones, R.L. (1998). Barley aleurone cells contain two types of vacuoles: Characterization of lytic organelles by use of fluorescent probes. Plant Cell 10, 685-698.
90. Tanchak, M.A., Griffing, L.R., Mersey, B.G., and Fowke, L.C. (1984). Endocytosis of cationized ferritin by coated vesicles of soybean protoplasts. Planta 162, 481-486.
91. Tang, B.L., Low, D.Y., and Hong, W. (1998a). Hsec22c: A homolog of yeast Sec22p and mammalian rsec22a and msec22b/ERS-24. Biochem. Biophys. Res. Commun. 243, 885-891.
92. Tang, B.L., Low, D.Y., Lee, S.S., Tan, A.E., and Wong, W. (1998b). Molecular cloning and localization of human syntaxin 16, a member of the syntaxin family of SNARE proteins. Biochem. Biophys. Res. Commun. 242, 673-679.
93. Tang, B.L., Low, D.Y., Tan, A.E., and Hong, W. (1998c). Syntaxin 10: A member of the syntaxin family localized to the trans-Golgi network. Biochem. Biophys. Res. Commun. 242, 345-350.
94. Tang, B.L., Tan, A.E.H., Lim, L.K., Lee, S.S., Low, D.Y.H., and Hong, W. (1998d). Syntaxin 12, a member of the syntaxin family localized to the endosome. J. Biol. Chem. 273, 6944-6950.
95. TerBush, D.R., Maurice, T., Roth, D., and Novick, P. (1996). The exocyst is a multiprotein complex required for exocytosis in Saccharomyces cerevisiae. EMBO J. 15, 6483-6494.
96. Traub, L.M., and Kornfeld, S. (1997). The trans-Golgi network: A late secretory sorting station. Curr. Opin. Cell Biol. 9, 527-533.
97. Trowbridge, L.S., Collawn, J.F., and Hopkins, C.R. (1994). Signal-dependent membrane protein trafficking in the endocytic pathway. Annu. Rev. Cell Biol. 9, 129-162.
98. Vitale, A., and Chrispeels, M. (1992). Sorting of proteins to the vacuole of plant cells. Bioessays 14, 151-160.
99. Vitale, A., and Denecke, J. (1999). The endoplasmic reticulum -Gateway of the secretory pathway. Plant Cell 11, 615-628.
100. Vowels, J.J., and Payne, G.S. (1998). A dileucine-like sorting signal directs transport into an AP-3-dependent, clathrin-independent pathway to the yeast vacuole. EMBO J. 17, 2482-2493.
101. Walch-Solimena, C., Balsi, J., Edelmann, L., Chapman, E.R., Fischer von Mollard, G., and Jahn, R. (1995). The t-SNARE syntaxin 1 and SNAP-25 are present on organelles that participate in synaptic vesicle recycling. J. Cell Biol. 128, 637-645.
102. Wang, H., Frelin, L., and Pevsner, J. (1997). Human syntaxin 7: A Pep12p/Vps6p homolog implicated in vesicle trafficking to lysosomes. Gene 199, 39-48.
103. Warren, G. (1993). Membrane partitioning during cell division. Annu. Rev. Biochem. 62, 323-348.
104. Waters, M.G., Clary, D.O., and Rothman, J.E. (1992). A novel 115-kD peripheral membrane protein is required for intercisternal transport in the Golgi stack. J. Cell Biol. 113, 245-260.
105. Weber, T., Zemelman, B.V., McNew, J.A., Westermann, B., Gmachl, M., Parlati, F., Sollner, T.H., and Rothman, J.E. (1998), SNAREpins: Minimal machinery for membrane fusion. Cell 92, 759-772.
106. Zhang, G.F., and Staehelin, L.A. (1992). Functional compartmentation of the Golgi apparatus in plant cells. Plant Physiol. 99, 1070-1083.
107. Zheng, H., Bassham, D.C., da Silva Conceição, A., and Raikhel, N.V. (1999a). The syntaxin family of proteins in Arabidopsis: A new syntaxin homologue shows polymorphism between two ecotypes. J. Exp. Bot., in press.
108. Zheng, H., Fischer von Mollard, G., Kovaleva, V., Stevens, T.H., and Raikhel, N.V. (1999b). The plant v-SNARE AtVTI1a likely mediates vesicle transport from the TGN to the prevacuole. Mol. Cell. Biol., in press.