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Volumn 15, Issue 16, 1996, Pages 4414-4422

Dynamics of DNA-tracking by two sliding-clamp proteins

Author keywords

Bacteriophage T4 gp45; DNA tracking proteins; E.coli ; Gene regulation; Sliding clamps

Indexed keywords

BACTERIAL PROTEIN; MACROGOL;

EID: 0029737407     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1002/j.1460-2075.1996.tb00814.x     Document Type: Article
Times cited : (26)

References (40)
  • 1
  • 2
    • 0028927786 scopus 로고
    • Old phage-new insights: Two recently recognized mechanisms of transcriptional regulation in bacteriophage T4 development
    • Brody, E.N., Kassavetis, G.A., Ouhammouch, M., Sanders, G.M., Tinker, R.L. and Geiduschek, E.P. (1995) Old phage-new insights: two recently recognized mechanisms of transcriptional regulation in bacteriophage T4 development. FEMS Microbiol. Lett., 128, 1-8.
    • (1995) FEMS Microbiol. Lett. , vol.128 , pp. 1-8
    • Brody, E.N.1    Kassavetis, G.A.2    Ouhammouch, M.3    Sanders, G.M.4    Tinker, R.L.5    Geiduschek, E.P.6
  • 3
    • 0027213814 scopus 로고
    • ATP-independent loading of the proliferating cell nuclear antigen requires DNA ends
    • Burgers, P.M. and Yoder, B.L. (1993) ATP-independent loading of the proliferating cell nuclear antigen requires DNA ends. J. Biol. Chem., 268, 19923-19926.
    • (1993) J. Biol. Chem. , vol.268 , pp. 19923-19926
    • Burgers, P.M.1    Yoder, B.L.2
  • 4
    • 0026409841 scopus 로고
    • Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity
    • Cayley, S., Lewis, B.A., Guttman, H.J. and Record, M.T., Jr (1991) Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. J. Mol. Biol., 222, 281-300.
    • (1991) J. Mol. Biol. , vol.222 , pp. 281-300
    • Cayley, S.1    Lewis, B.A.2    Guttman, H.J.3    Record Jr., M.T.4
  • 5
    • 0021357731 scopus 로고
    • Defining a bacteriophage T4 late promoter: Absence of a '-35′ region
    • Elliott, T. and Geiduschek, E.P. (1984) Defining a bacteriophage T4 late promoter: absence of a '-35′ region. Cell, 36, 211-219.
    • (1984) Cell , vol.36 , pp. 211-219
    • Elliott, T.1    Geiduschek, E.P.2
  • 6
    • 0026606939 scopus 로고
    • Cryoelectron microscopic visualization of functional subassemblies of the bacteriophage T4 DNA replication complex
    • Gogol, E.P, Young, M.C., Kubasek, W.L., Jarvis, T.C. and vonHippel, P.H. (1992) Cryoelectron microscopic visualization of functional subassemblies of the bacteriophage T4 DNA replication complex. J. Mol. Biol., 224, 395-412.
    • (1992) J. Mol. Biol. , vol.224 , pp. 395-412
    • Gogol, E.P.1    Young, M.C.2    Kubasek, W.L.3    Jarvis, T.C.4    Vonhippel, P.H.5
  • 7
    • 0028147234 scopus 로고
    • The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a DNA hairpin helix
    • Hacker, K.J. and Alberts, B.M. (1994a) The rapid dissociation of the T4 DNA polymerase holoenzyme when stopped by a DNA hairpin helix. J. Biol. Chem., 269, 24221-24228.
    • (1994) J. Biol. Chem. , vol.269 , pp. 24221-24228
    • Hacker, K.J.1    Alberts, B.M.2
  • 8
    • 0028033533 scopus 로고
    • The slow dissociation of the T4 DNA polymerase holoenzyme when stalled by nucleotide omission. An indication of a highly processive enzyme
    • Hacker, K.J. and Alberts, B.M. (1994b) The slow dissociation of the T4 DNA polymerase holoenzyme when stalled by nucleotide omission. An indication of a highly processive enzyme. J. Biol. Chem., 269, 24209-24220.
    • (1994) J. Biol. Chem. , vol.269 , pp. 24209-24220
    • Hacker, K.J.1    Alberts, B.M.2
  • 9
    • 0024325630 scopus 로고
    • Enhancement of bacteriophage T4 late transcription by components of the T4 DNA replication apparatus
    • Herendeen, D.R., Kassavetis, G.A., Barry, J., Alberts, B.M. and Geiduschek, E.P. (1989) Enhancement of bacteriophage T4 late transcription by components of the T4 DNA replication apparatus. Science, 245, 952-958.
    • (1989) Science , vol.245 , pp. 952-958
    • Herendeen, D.R.1    Kassavetis, G.A.2    Barry, J.3    Alberts, B.M.4    Geiduschek, E.P.5
  • 10
    • 0025291710 scopus 로고
    • An RNA polymerase-binding protein that is required for communication between an enhancer and a promoter
    • Herendeen, D.R., Williams, K.P., Kassavetis, G.A. and Geiduschek, E.P. (1990) An RNA polymerase-binding protein that is required for communication between an enhancer and a promoter. Science, 248, 573-578.
    • (1990) Science , vol.248 , pp. 573-578
    • Herendeen, D.R.1    Williams, K.P.2    Kassavetis, G.A.3    Geiduschek, E.P.4
  • 11
    • 0026752261 scopus 로고
    • A transcriptional enhancer whose function imposes a requirement that proteins track along DNA
    • Herendeen, D.R., Kassavetis, G.A. and Geiduschek, E.P. (1992) A transcriptional enhancer whose function imposes a requirement that proteins track along DNA. Science, 256, 1298-1303.
    • (1992) Science , vol.256 , pp. 1298-1303
    • Herendeen, D.R.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 12
    • 0019458103 scopus 로고
    • Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a single-stranded DNA template
    • Huang, C.-C., Hearst, J.E. and Alberts, B.M. (1981) Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a single-stranded DNA template. J. Biol. Chem., 256, 4087-4094.
    • (1981) J. Biol. Chem. , vol.256 , pp. 4087-4094
    • Huang, C.-C.1    Hearst, J.E.2    Alberts, B.M.3
  • 13
    • 0024385309 scopus 로고
    • Structural and enzymatic studies of the T4 DNA replication system. I. Physical characterization of the polymerase accessory protein complex
    • Jarvis, T.C., Paul, L.S., Hockensmith, J.W. and vonHippel, P.H. (1989a) Structural and enzymatic studies of the T4 DNA replication system. I. Physical characterization of the polymerase accessory protein complex. J. Biol. Chem., 264, 12709-12716.
    • (1989) J. Biol. Chem. , vol.264 , pp. 12709-12716
    • Jarvis, T.C.1    Paul, L.S.2    Hockensmith, J.W.3    VonHippel, P.H.4
  • 14
    • 0024406804 scopus 로고
    • Structural and enzymatic studies of the T4 DNA replication system. II. ATPase properties of the polymerase accessory protein complex
    • Jarvis, T.C., Paul, L.S., Hockensmith, J.W. and vonHippel, P.H. (1989b) Structural and enzymatic studies of the T4 DNA replication system. II. ATPase properties of the polymerase accessory protein complex. J. Biol. Chem., 264, 12717-12729.
    • (1989) J. Biol. Chem. , vol.264 , pp. 12717-12729
    • Jarvis, T.C.1    Paul, L.S.2    Hockensmith, J.W.3    VonHippel, P.H.4
  • 15
    • 0024992188 scopus 로고
    • 'Macromolecular crowding': Thermodynamic consequences for protein-protein interactions within the T4 DNA replication complex
    • Jarvis, T.C., Ring, D.M., Daube, S.S. and vonHippel, P.H. (1990) 'Macromolecular crowding': thermodynamic consequences for protein-protein interactions within the T4 DNA replication complex. J. Biol. Chem., 265, 15160-15167.
    • (1990) J. Biol. Chem. , vol.265 , pp. 15160-15167
    • Jarvis, T.C.1    Ring, D.M.2    Daube, S.S.3    VonHippel, P.H.4
  • 16
    • 0019163097 scopus 로고
    • Purification and characterization of the β subunit of DNA polymerase III holoenzyme of Escherichia coli
    • Johanson, K.O. and McHenry, C.S. (1980) Purification and characterization of the β subunit of DNA polymerase III holoenzyme of Escherichia coli. J. Biol Chem., 254, 10984-10990.
    • (1980) J. Biol Chem. , vol.254 , pp. 10984-10990
    • Johanson, K.O.1    McHenry, C.S.2
  • 17
    • 0029240169 scopus 로고
    • Accessory proteins function as matchmakers in the assembly of the T4 DNA polymerase holoenzyme
    • Kaboord, B.F. and Benkovic, S.J. (1995) Accessory proteins function as matchmakers in the assembly of the T4 DNA polymerase holoenzyme. Curr. Biol., 5, 149-157.
    • (1995) Curr. Biol. , vol.5 , pp. 149-157
    • Kaboord, B.F.1    Benkovic, S.J.2
  • 18
    • 0029026635 scopus 로고
    • DNA polymerase III holoenzyme: Structure and function of a chromosomal replicating machine
    • Kelman, Z. and O'Donnell, M. (1995a) DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine. Annu. Rev. Biochem., 64, 171-200.
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 171-200
    • Kelman, Z.1    O'Donnell, M.2
  • 19
    • 0029163487 scopus 로고
    • Structural and functional similarities of prokaryotic and eukaryotic DNA polymerase sliding clamps
    • Kelman, Z. and O'Donnell, M. (1995b) Structural and functional similarities of prokaryotic and eukaryotic DNA polymerase sliding clamps. Nucleic Acids Res., 23, 3613-3620.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3613-3620
    • Kelman, Z.1    O'Donnell, M.2
  • 20
    • 0026717535 scopus 로고
    • Three-dimensional structure of the β subunit of E.coli DNA polymerase III holoenzyme: A sliding DNA clamp
    • Kong, X.-P., Onrust, R., O'Donnell, M. and Kuriyan, J. (1992) Three-dimensional structure of the β subunit of E.coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell, 69, 425-437.
    • (1992) Cell , vol.69 , pp. 425-437
    • Kong, X.-P.1    Onrust, R.2    O'Donnell, M.3    Kuriyan, J.4
  • 21
    • 0028618183 scopus 로고
    • Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
    • Krishna, T.S., Kong, X.-P., Gary, S., Burgers, P.M. and Kuriyan, J. (1994). Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA. Cell, 79, 1233-1243.
    • (1994) Cell , vol.79 , pp. 1233-1243
    • Krishna, T.S.1    Kong, X.-P.2    Gary, S.3    Burgers, P.M.4    Kuriyan, J.5
  • 22
    • 0027772958 scopus 로고
    • Sliding clamps of DNA polymerases
    • Kuriyan, J. and O'Donnell, M. (1993) Sliding clamps of DNA polymerases. J. Mol. Biol., 234, 915-925.
    • (1993) J. Mol. Biol. , vol.234 , pp. 915-925
    • Kuriyan, J.1    O'Donnell, M.2
  • 23
    • 0021685439 scopus 로고
    • T4 DNA polymerase. Rates and processivity on single-stranded DNA templates
    • Mace, D.C. and Alberts, B.M. (1984a) T4 DNA polymerase. Rates and processivity on single-stranded DNA templates. J. Mol. Biol., 177, 295-311.
    • (1984) J. Mol. Biol. , vol.177 , pp. 295-311
    • Mace, D.C.1    Alberts, B.M.2
  • 24
    • 0021705138 scopus 로고
    • Characterization of the stimulatory effect of T4 gene 45 protein and the gene 44/62 protein complex on DNA synthesis by T4 DNA polymerase
    • Mace, D.C. and Alberts, B.M. (1984b) Characterization of the stimulatory effect of T4 gene 45 protein and the gene 44/62 protein complex on DNA synthesis by T4 DNA polymerase. J. Mol. Biol., 177, 313-327.
    • (1984) J. Mol. Biol. , vol.177 , pp. 313-327
    • Mace, D.C.1    Alberts, B.M.2
  • 25
    • 0025747513 scopus 로고
    • DNA footprinting studies of the complex formed by the T4 DNA polymerase holoenzyme at a primer-template junction
    • Munn, M.M. and Alberts, B.M. (1991) DNA footprinting studies of the complex formed by the T4 DNA polymerase holoenzyme at a primer-template junction. J. Biol. Chem., 266, 20034-20044.
    • (1991) J. Biol. Chem. , vol.266 , pp. 20034-20044
    • Munn, M.M.1    Alberts, B.M.2
  • 26
    • 0030070111 scopus 로고    scopus 로고
    • A molecular switch in a replication machine defined by an internal competition for protein rings
    • Naktinis, V., Turner, J. and O'Donnell, M. (1996) A molecular switch in a replication machine defined by an internal competition for protein rings. Cell, 84, 137-145.
    • (1996) Cell , vol.84 , pp. 137-145
    • Naktinis, V.1    Turner, J.2    O'Donnell, M.3
  • 27
    • 0029058292 scopus 로고
    • Assembly of a chromosomal replication machine: Two DNA polymerases, a clamp loader, and sliding clamps in one holoenzyme particle. I. Organization of the clamp loader
    • Onrust, R., Finkelstein, J., Naktinis, V., Turner, J., Fang, L. and O'Donnell, M. (1995) Assembly of a chromosomal replication machine: two DNA polymerases, a clamp loader, and sliding clamps in one holoenzyme particle. I. Organization of the clamp loader. J. Biol. Chem., 270, 13348-13357.
    • (1995) J. Biol. Chem. , vol.270 , pp. 13348-13357
    • Onrust, R.1    Finkelstein, J.2    Naktinis, V.3    Turner, J.4    Fang, L.5    O'Donnell, M.6
  • 28
    • 0027469983 scopus 로고
    • Assembly of a functional replication complex without ATP hydrolysis: A direct interaction of bacteriophage T4 gp45 with T4 DNA polymerase
    • Reddy, M.K., Weitzel, S.E. and vonHippel, P.H. (1993) Assembly of a functional replication complex without ATP hydrolysis: a direct interaction of bacteriophage T4 gp45 with T4 DNA polymerase. Proc. Natl Acad. Sci. USA, 90, 3211-3215.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 3211-3215
    • Reddy, M.K.1    Weitzel, S.E.2    Vonhippel, P.H.3
  • 29
    • 0028894966 scopus 로고
    • Using macromolecular crowding agents to identify weak interactions with DNA replication complexes
    • Reddy, M.K., Weitzel, S.E.. Daube, S.S., Jarvis, T.C. and vonHippel, P.H. (1995) Using macromolecular crowding agents to identify weak interactions with DNA replication complexes. Methods Enzymol., 262, 466-476.
    • (1995) Methods Enzymol. , vol.262 , pp. 466-476
    • Reddy, M.K.1    Weitzel, S.E.2    Daube, S.S.3    Jarvis, T.C.4    Vonhippel, P.H.5
  • 30
    • 0027981341 scopus 로고
    • Use of a macromolecular crowding agent to dissect interactions and define functions in transcriptional activation by a DNA-tracking protein: Bacteriophage T4 gp45 and late transcription
    • Sanders, G.M., Kassavetis, G.A. and Geiduschek, E.P. (1994) Use of a macromolecular crowding agent to dissect interactions and define functions in transcriptional activation by a DNA-tracking protein: bacteriophage T4 gp45 and late transcription. Pmc. Natl Acad. Sci. USA, 91, 7703-7707.
    • (1994) Pmc. Natl Acad. Sci. USA , vol.91 , pp. 7703-7707
    • Sanders, G.M.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 31
    • 0029114564 scopus 로고
    • Rules governing the efficiency and polarity of loading a tracking clamp protein onto DNA: Determinants of enhancement in bacteriophage T4 late transcription
    • Sanders, G.M., Kassavetis, G.A. and Geiduschek, E.P. (1995) Rules governing the efficiency and polarity of loading a tracking clamp protein onto DNA: determinants of enhancement in bacteriophage T4 late transcription. EMBO J., 14, 3966-3976.
    • (1995) EMBO J. , vol.14 , pp. 3966-3976
    • Sanders, G.M.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 32
    • 0027936237 scopus 로고
    • Smart machines at the DNA replication fork
    • Stillman, B. (1994) Smart machines at the DNA replication fork. Cell, 78, 725-728.
    • (1994) Cell , vol.78 , pp. 725-728
    • Stillman, B.1
  • 33
    • 0025809742 scopus 로고
    • Mechanism of the sliding β-clamp of DNA polymerase III holoenzyme
    • Stukenberg, P.T., Studwell-Vaughan, P.S. and O'Donnell, M. (1991) Mechanism of the sliding β-clamp of DNA polymerase III holoenzyme. J. Biol. Chem., 266, 11328-11334.
    • (1991) J. Biol. Chem. , vol.266 , pp. 11328-11334
    • Stukenberg, P.T.1    Studwell-Vaughan, P.S.2    O'Donnell, M.3
  • 34
    • 0028093437 scopus 로고
    • An explanation for lagging strand replication: Polymerase hopping among DNA sliding clamps
    • Stukenberg, P.T., Tumer, J. and O'Donnell, M. (1994) An explanation for lagging strand replication: polymerase hopping among DNA sliding clamps. Cell, 78, 877-887.
    • (1994) Cell , vol.78 , pp. 877-887
    • Stukenberg, P.T.1    Tumer, J.2    O'Donnell, M.3
  • 35
    • 0028350651 scopus 로고
    • Transcriptional activation by a DNA-tracking protein: Structural consequences of enhancement at the T4 late promoter
    • Tinker, R.L., Williams, K.P., Kassavetis, G.A. and Geiduschek, E.P. (1994a) Transcriptional activation by a DNA-tracking protein: structural consequences of enhancement at the T4 late promoter. Cell, 77, 225-237.
    • (1994) Cell , vol.77 , pp. 225-237
    • Tinker, R.L.1    Williams, K.P.2    Kassavetis, G.A.3    Geiduschek, E.P.4
  • 36
    • 0027997561 scopus 로고
    • Detecting the ability of viral, bacterial and eukaryotic replication proteins to track along DNA
    • Tinker, R.L., Kassavetis, G.A. and Geiduschek, E.P. (1994b) Detecting the ability of viral, bacterial and eukaryotic replication proteins to track along DNA. EMBO J., 13, 5330-5337.
    • (1994) EMBO J. , vol.13 , pp. 5330-5337
    • Tinker, R.L.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 37
    • 0029790467 scopus 로고    scopus 로고
    • A direct interaction between a DNA-tracking protein and a promoter-recognition protein: Implications for searching DNA sequence
    • in press
    • Tinker-Kulberg, R.L., Fu, T.-J., Geiduschek, E.P. and Kassavetis, G.A. (1996) A direct interaction between a DNA-tracking protein and a promoter-recognition protein: implications for searching DNA sequence. EMBO J., 15, in press.
    • (1996) EMBO J. , vol.15
    • Tinker-Kulberg, R.L.1    Fu, T.-J.2    Geiduschek, E.P.3    Kassavetis, G.A.4
  • 38
    • 0024359479 scopus 로고
    • The negative charge of Glu111 is required to activate the cleavage center of EcoRI endonuclease
    • Wright, D.J., King, K. and Modrich, P. (1989) The negative charge of Glu111 is required to activate the cleavage center of EcoRI endonuclease. J. Biol. Chem., 264, 11816-11821.
    • (1989) J. Biol. Chem. , vol.264 , pp. 11816-11821
    • Wright, D.J.1    King, K.2    Modrich, P.3
  • 40
    • 0027318513 scopus 로고
    • Macromolecular crowding: Biochemical, biophysical, and physiological consequences
    • Zimmerman, S.B. and Minton, A.P. (1993) Macromolecular crowding: biochemical, biophysical, and physiological consequences. Annu. Rev. Biophys. Biomol. Struct., 22, 27-65.
    • (1993) Annu. Rev. Biophys. Biomol. Struct. , vol.22 , pp. 27-65
    • Zimmerman, S.B.1    Minton, A.P.2


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