Recruitment of the putative transcription-repair coupling factor CSB/ERCC6 to RNA polymerase II elongation complexes

Molecular and Cellular Biology

Volumn 17, Issue 12, 1997, Pages 6803-6814

  Tantin, Dean ^a   Kansal, Ashna ^a   Carey, Michael ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; RNA POLYMERASE II; TRANSCRIPTION FACTOR;

ARTICLE; COCKAYNE SYNDROME; DEVELOPMENTAL DISORDER; DNA PROTEIN COMPLEX; DNA REPAIR; DNA TEMPLATE; EXCISION REPAIR; GROWTH RETARDATION; HYDROLYSIS; PRIORITY JOURNAL; TRANSCRIPTION REGULATION;

EID: 0030667078     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.17.12.6803     Document Type: Article

References (64)

1. Aladjem, M. I., M. Groudine, L. L. Brody, E. S. Dicken, R. E. Fournier, G. M. Wahl, and E. M. Epner. 1995. Participation of the human beta-globin locus control region in initiation of DNA replication. Science 270:815-819.
2. Auble, D. T., K. E. Hansen, C. G. Mueller, W. S. Lane, J. Thorner, and S. Hahn. 1994. Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev. 8:1920-1934.
3. Balajee, A. S., A. May, G. L. Dianov, E. C. Friedberg, and V. A. Bohr. 1997. Reduced RNA polymerase II transcription in intact and permeabilized Cockayne syndrome group B cells. Proc. Natl. Acad. Sci. USA 94:4306-4311.
4. Bell, S. P., R. Kobayashi, and B. Stillman. 1993. Yeast origin recognition complex functions in transcription silencing and DNA replication. Science 262:1844-1849.
5. Bohr, V. A., C. A. Smith, D. S. Okumoto, and P. C. Hanawalt. 1985. DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell 40: 359-369.
6. Bunick, D., R. Zandomeni, S. Ackerman, and R. Weinmann. 1982. Mechanism of RNA polymerase II-specific initiation of transcription in vitro: ATP requirement and uncapped runoff transcripts. Cell 29:877-886.
7. Cooper, P. K., T. Nouspikel, S. G. Clarckson, and S. A. Leadon. 1997. Defective transcription-coupled repair of oxidative base damage in Cockayne syndrome patients from XP group G. Science 275:990-993.
8. Dignam, J. D., P. L. Martin, B. S. Shastry, and R. G. Roeder. 1983. Eukaryotic gene transcription with purified components. Methods Enzymol. 101: 582-598.
9. Drapkin, R., J. T. Reardon, A. Ansari, J. C. Huang, L. Zawel, K. Ahn, A. Sancar, and D. Reinberg. 1994. Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II. Nature 368:769-772.
10. Foss, M., F. J. McNally, P. Laurenson, and J. Rine. 1993. Origin recognition complex (ORC) in transcriptional silencing and DNA replication in S. cerevisiae. Science 262:1838-1844.
11. Frenkel, K., M. S. Goldstein, N. J. Duker, and G. W. Teebor. 1981. Identification of the cis-thymine glycol moiety in oxidized deoxyribonucleic acid. Biochemistry 20:750-754.
12. Friedberg, E. C. 1996. Relationships between DNA repair and transcription. Annu. Rev. Biochem. 65:15-42.
13. Guzder, S. N., Y. Habraken, P. Sung, L. Prakash, and S. Prakash. 1996. RAD26, the yeast homolog of human Cockayne's syndrome group B gene, encodes a DNA-dependent ATPase. J. Biol. Chem. 271:18314-18317.
14. Henning, K. A., L. Li, N. Iyer, L. D. McDaniel, M. S. Reagan, R. Legerski, R. A. Schultz, M. Stefanini, A. R. Lehmann, L. V. Mayne, et al. 1995. The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH. Cell 82:555-564.
15. Hoeijmakers, J. H. J., J.-M. Egly, and W. Vermeulen. 1996. TFIIH: a key component in multiple DNA transactions. Curr. Opin. Genet. Dev. 6:26-33.
16. Holstege, F. C., D. Tantin, M. Carey, P. C. van der Vliet, and H. T. Timmers. 1995. The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA. EMBO J. 14:810-819.
17. Holstege, F. C., P. C. van der Vliet, and H. T. Timmers. 1996. Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH. EMBO J. 15:1666-1677.
18. Humbert, S., H. van Vuuren, Y. Lutz, J. H. Hoeijmakers, J. M. Egly, and V. Moncollin. 1994. p44 and p34 subunits of the BTF2/TFIIH transcription factor have homologies with SSL1, a yeast protein involved in DNA repair. EMBO J. 13:2393-2398.
19. Iyer, N., M. S. Reagan, K. J. Wu, B. Canagarajah, and E. C. Friedberg. 1996. Interactions involving the human RNA polymerase II transcription/nucleotide excision repair complex TFIIH, the nucleotide excision repair protein XPG, and Cockayne syndrome group B (CSB) protein. Biochemistry 35: 2157-2167.
20. Kadesch, T. R., and M. J. Chamberlin. 1982. Studies of in vitro transcription by calf thymus RNA polymerase II using a novel duplex DNA template. J. Biol. Chem. 257:5286-5295.
21. Kerppola, T. K., and C. M. Kane. 1990. Analysis of the signals for transcription termination by purified RNA polymerase II. Biochemistry 29:269-278.
22. Klemm, R. D., R. J. Austin, and S. P. Bell. 1997. Coordinate binding of ATP and origin DNA regulates the ATPase activity of the origin recognition complex. Cell 88:493-502.
23. Kogoma, T., G. W. Cadwell, K. G. Barnard, and T. Asai. 1996. The DNA replication priming protein. PriA, is required for homologous recombination and double-strand break repair. J. Bacteriol. 178:1258-1264.
24. Kow, Y. W., S. S. Wallace, and B. Van Houten. 1990. UvrABC nuclease complex repairs thymine glycol, an oxidative DNA base damage. Mutat. Res. 235:147-156.
25. Leadon, S. A., S. L. Barbee, and A. B. Dunn. 1995. The yeast RAD2, but not RAD1, gene is involved in the transcription-coupled repair of thymine glycols. Mutat. Res. 337:169-178.
26. Leadon, S. A., and P. K. Cooper. 1993. Preferential repair of ionizing radiation-induced damage in the transcribed strand of an active human gene is defective in Cockayne syndrome. Proc. Natl. Acad. Sci. USA 90:10499-10503.
27. Leadon, S. A., and D. A. Lawrence. 1992. Strand-selective repair of DNA damage in the yeast GAL7 gene requires RNA polymerase II. J. Biol. Chem. 267:23175-23182.
28. Lehmann, A. R. 1995. Nucleotide excision repair and the link with transcription. Trends Biochem. Sci. 20:402-405.
29. Marinoni, J. C., R. Roy, W. Vermeulen, P. Miniou, Y. Lutz, G. Weeda, T. Seroz, D. M. Gomez, J. H. Hoeijmakers, and J. M. Egly. 1997. Cloning and characterization of p52, the fifth subunit of the core of the transcription/ DNA repair factor TFIIH. EMBO J. 16:1093-1102.
30. Mayne, L. V., and A. R. Lehmann. 1982. Failure of RNA synthesis to recover after UV-radiation: an early defect in cells from individuals with Cockayne's syndrome and xeroderma pigmentosum. Cancer Res. 42:1473-1478.
31. Mellon, I., V. A. Bohr, C. A. Smith, and P. C. Hanawalt. 1986. Preferential DNA repair of an active gene in human cells. Proc. Natl. Acad. Sci. USA 83:8878-8882.
32. Mellon, I., and P. C. Hanawalt. 1989. Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand. Nature 342:95-98.
33. Mellon, I., G. Spivak, and P. C. Hanawalt. 1987. Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell 51:241-249.
34. Milbrandt, J. D., N. H. Heintz, W. C. White, S. M. Rothman, and J. L. Hamlin. 1981. Methotrexate-resistant Chinese hamster ovary cells have amplified a 135-kilobase-pair region that includes the dihydrofolate reductase gene. Proc. Natl. Acad. Sci. USA 78:6043-6047.
35. Moore, M. J., C. C. Query, and P. A. Sharp. 1993. Splicing of precursors to messenger RNA's by the spliceosome. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
36. Neer, E. J., C. J. Schmidt, R. Nambudripad, and T. F. Smith. 1994. The ancient regulatory-protein family of WD-repeal proteins. Nature 371:297-300. (Erratum, 371:812, 1994.)
37. Ohba, R., K. Matsumoto, and Y. Ishimi. 1996. Induction of DNA replication by transcription in the region upstream of the human c-myc gene in a model replication system. Mol. Cell. Biol. 16:5754-5763.
38. O'Neill, E. A., C. Fletcher, C. R. Burrow, N. Heintz, R. G. Roeder, and T. J. Kelly. 1988. Transcription factor OTF-1 is functionally identical to the DNA replication factor NF-III. Science 241:1210-1213.
39. Pan, G., and J. Greenblatt. 1994. Initiation of transcription by RNA polymerase II is limited by melting of the promoter DNA in the region immediately upstream of the initiation site. J. Biol. Chem. 269:30101-30104.
40. Parvin, J. D., and P. A. Sharp. 1993. DNA topology and a minimal set of basal factors for transcription by RNA polymerase II. Cell 73:533-540.
41. Reinberg, D., and R. G. Roeder. 1987. Factors involved in specific transcription by mammalian RNA polymerase II. Purification and functional analysis of initiation factors IIB and IIE. J. Biol. Chem. 262:3310-3321.
42. Sancar, A. 1996. DNA excision repair. Annu. Rev. Biochem. 65:43-81.
43. Sawadogo, M., and R. G. Roeder. 1984. Energy requirement for specific transcription initiation by the human RNA polymerase II syslem. J. Biol. Chem. 259:5321-5326.
44. Schaeffer, L., V. Moncollin, R. Roy, A. Staub, M. Mezzina, A. Sarasin, G. Weeda, J. H. Hoeijmakers, and J. M. Egly. 1994. The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor. EMBO J. 13:2388-2392.
45. Schaeffer, L., R. Roy, S. Humbert, V. Moncollin, W. Vermeulen, J. H. Hoeijmakers, P. Chambon, and J. M. Egly. 1993. DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor. Science 260:58-63.
46. Schmickel, R. D., E. H. Y. Chu, J. E. Trosko, and C. C. Chang. 1977. Cockayne syndrome: a cellular sensitivity to ultraviolet light. Pediatrics 60: 135-139.
47. Segil, N., M. Guermah, A. Hoffmann, R. G. Roeder, and N. Heintz. 1996. Mitotic regulation of TFIID: inhibition of activator-dependent transcription and changes in subcellular localization. Genes Dev. 10:2389-2400.
48. Selby, C. P., and A. Sancar. 1991. Gene-and strand-specific repair in vitro: partial purification of a transcription-repair coupling factor. Proc. Natl. Acad. Sci. USA 88:8232-8236.
49. Selby, C. P., and A. Sancar. 1997. Human transcription-repair coupling factor CSB/ERCC6 is a DNA-stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II. J. Biol. Chem. 272:1885-1890.
50. Selby, C. P., and A. Sancar. 1993. Molecular mechanism of transcription-repair coupling. Science 260:53-58.
51. Sweder, K. S., and P. C. Hanawalt. 1992. Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc. Natl. Acad. Sci. USA 89:10696-10700.
52. Tantin, D., and M. Carey. 1994. A heteroduplex template circumvents the energetic requirement for ATP during activated transcription by RNA polymerase II. J. Biol. Chem. 269:17397-17400.
53. 52a. Tantin, D., and M. Carey. Unpublished data.
54. Thompson, N. E., D. B. Aronson, and R. R. Burgess. 1990. Purification of eukaryotic RNA polymerase II by immunoaffinity chromatography. Elution of active enzyme with protein stabilizing agents from a polyol-responsive monoclonal antibody. J. Biol. Chem. 265:7069-7077.
55. Timmers, H. T. 1994. Transcription initiation by RNA polymerase II does not require hydrolysis of the beta-gamma phosphoanhydride bond of ATP. EMBO J. 13:391-399.
56. Troelstra, C., A. van Gool, J. de Wit, W. Vermeulen, D. Bootsma, and J. H. Hoeijmakers. 1992. ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes. Cell 71:939-953.
57. van Gool, A. J., R. Verhage, S. M. Swagemakers, P. van de Putte, J. Brouwer, C. Troelstra, D. Bootsma, and J. H. Hoeijmakers. 1994. RAD26, the functional S. cerevisiae homolog of the Cockayne syndrome B gene ERCC6. EMBO J. 13:5361-5369.
58. van Hoffen, A., A. T. Natarajan, L. V. Mayne, A. A. van Zeeland, L. H. F. Mullenders, and J. Venema. 1993. Deficient repair of the transcribed strand of active genes in Cockayne's syndrome cells. Nucleic Acids Res. 21:5890-5895.
59. van Oosterwijk, M. F., A. Versteeg, R. Filon, A. A. van Zeeland, and L. H. Mullenders. 1996. The sensitivity of Cockayne's syndrome cells to DNA-damaging agents is not due to defective transcription-coupled repair of active genes. Mol. Cell. Biol. 16:4436-4444.
60. Venema, J., L. H. Mullenders, A. T. Natarajan, A. A. van Zeeland, and L. V. Mayne. 1990. The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA. Proc. Natl. Acad. Sci. USA 87:4707-4711.
61. Wang, W., M. Carey, and J. D. Gralla. 1992. Polymerase II promoter activation: closed complex formation and ATP-driven start site opening. Science 255:450-453.
62. Wang, Z., S. Buratowski, J. Q. Svejstrup, W. J. Feaver, X. Wu, R. D. Kornberg, T. F. Donahue, and E. C. Friedberg. 1995. The yeast TFB1 and SSL1 genes, which encode subunits of transcription factor IIH, are required for nucleotide excision repair and RNA polymerase II transcription. Mol. Cell. Biol. 15:2288-2293.
63. Wang, Z., J. Q. Svejstrup, W. J. Feaver, X. Wu, R. D. Kornberg, and E. C. Friedberg. 1994. Transcription factor b (TFIIH) is required during nucleotide-excision repair in yeast. Nature 368:74-76.
64. Zawel, L., K. P. Kumar, and D. Reinberg. 1995. Recycling of the general transcription factors during RNA polymerase II transcription. Genes Dev. 9:1479-1490.