Loss of heterozygosity in tumor cells requires re-evaluation: The data are biased by the size-dependent differential sensitivity of allele detection

FEBS Letters

Volumn 462, Issue 1-2, 1999, Pages 121-128

  Liu, Jian ^a   Zabarovska, Veronika I ^a   Braga, Eleonora ^a,b   Alimov, Andrei ^a,c   Klein, George ^a   Zabarovsky, Eugene R ^a,c,d  

^a KAROLINSKA INSTITUTE   (Sweden)

^b Russian State Genetics Center   (Russian Federation)

^c ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

^d KAROLINSKA INSTITUTE   (Sweden)

Author keywords

Human chromosome 3; Human genetics; Interstitial deletion; Loss of heterozygosity; Microsatellite marker; Renal cell carcinoma; Tumor suppressor gene

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ANIMAL CELL; ARTICLE; CHROMOSOME 3; CHROMOSOME MARKER; CONTROLLED STUDY; HETEROZYGOSITY LOSS; HUMAN; HUMAN CELL; HYBRID CELL; KIDNEY CARCINOMA; MOUSE; NONHUMAN; PRIORITY JOURNAL; TUMOR CELL; TUMOR SUPPRESSOR GENE;

ALLELES; ANIMALS; CELLS, CULTURED; CHROMOSOMES, HUMAN, PAIR 3; EVALUATION STUDIES; HUMANS; HYBRID CELLS; LOSS OF HETEROZYGOSITY; MICE; MICROSATELLITE REPEATS; QUALITY CONTROL; REPRODUCIBILITY OF RESULTS; TUMOR MARKERS, BIOLOGICAL;

ANIMALIA;

EID: 0032712537     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(99)01523-9     Document Type: Article

References (116)

1. Kok K., Naylor S.L., Buys C.H. Adv. Cancer Res. 71:1997;27-92.
2. Van den Berg A., Buys C.H. Genes Chromosomes Cancer. 19:1997;59-76.
3. Lubinski J., Hadaczek P., Podolski J., Toloczko A., Sikorski A., McCue P., Druck T., Huebner K. Cancer Res. 54:1994;3710-3713.
4. Wilhelm M., Bugert P., Kenck C., Staehler G., Kovacs G. Cancer Res. 55:1995;5383-5385.
5. Foster K. Br. J. Cancer. 69:1994;230-234.
6. Shuin T., Kondo K., Torigoe S., Kishida T., Kubota Y., Hosaka M., Nagashima Y., Kitamura H., Latif F., Zbar B., Lerman M.I., Yao M. Cancer Res. 54:1994;2852-2855.
7. Hu L., Eiriksdottir G., Lebedeva T., Kholodnyuk I., Alimov A., Chen F., Luo Y., Zabarovsky E., Ingvarsson S., Klein G., Ernberg I. Genes Chromosomes Cancer. 17:1996;118-126.
8. Wang J.Y., Zabarovsky E.R., Talmadge C., Berglund P., Chan K.W.K., Pokrovskaya E.S., Kashuba V.I., Zhen D., Boldog F., Zabarovskaya V.I., Kisselev L.L., Stanbridge E.J., Klein G., Sumegi J. Genomics. 20:1994;105-113.
9. Kholodnyuk I., Kost-Alimova M., Kashuba V., Gizatulin R., Szeles A., Stanbridge E., Zabarovsky E., Klein G., Imreh S. Genes Chromosomes Cancer. 18:1997;200-211.
10. Zabarovsky E.R., Kashuba V.I., Pokrovskaya E.S. Genomics. 16:1993;713-719.
11. Zabarovsky E.R., Kashuba V.I., Kholodnyuk I.D. Genomics. 21:1994;486-489.
12. Samadashvily G.M., Raca G., Mirkin S.M. Nat. Genet. 17:1997;298-304.
13. MacGrogan D., Bookstein R. Genes Chromosomes Cancer. 10:1994;151-159.
14. Van den Berg A., Hulsbeek M.M.F., de Jong D., Veldhuis P.M.J.F., Roche J., Buys C.H.C.M. Genes Chromosomes Cancer. 15:1996;64-72.
15. Nagai M.A., Yamamoto L., Salaorni S., Pacheco M.M., Brentani M.M., Bardosa E.M., Brentani R.R., Mazoyer S., Smith S.A., Ponder B.A.J., Milligan L.M. Genes Chromosomes Cancer. 11:1994;58-62.
16. Quinn A.G., Sikkink S., Rees J.L. Genes Chromosomes Cancer. 11:1994;222-225.
17. Hampton G.M., Mannermaa A., Winquist R., Alavaikko M., Blanco G., Taskines P.L., Kiviniemi H., Newsham I., Cavenee W.K., Evans G.A. Cancer Res. 54:1994;4586-4589.
18. Quinn A.G., Sikkink S., Rees J.L. Cancer Res. 54:1994;4756-4759.
19. Rubio M.P., Correa K.M., Ueki K., Mohrenweiser H.W., Gusella J.F., Deimling A., Louis D.N. Cancer Res. 54:1994;4760-4763.
20. Ah-See K.W., Cooke T.G., Pickford I.R., Soutar D., Balmain A. Cancer Res. 54:1994;1617-1621.
21. Merlo A., Gabrielson E., Mabry M., Vollmer R., Baylin S.B., Sidransky D. Cancer Res. 54:1994;2322-2326.
22. Fujino T., Risinger J.I., Collins N.K., Liu F.S., Nishii H., Takahashi H., Westphal E.M., Barrett J.C., Sasaki H., Kohler M.F. Cancer Res. 54:1994;4294-4298.
23. Shaw M.E., Knowles M.A. Genes Chromosomes Cancer. 13:1995;1-8.
24. Yaremko M.L., Recant W.M., Westbrook C.A. Genes Chromosomes Cancer. 13:1995;186-191.
25. Hashimoto N., Ichikawa D., Arakawa Y., Date K., Ueda S., Nakagawa Y., Horii A., Nakamura Y., Abe T., Inazawa J. Genes Chromosomes Cancer. 14:1995;295-300.
26. Radford D.M., Fair K.L., Phillips N.J., Ritter J.H., Steinbrueck T., Holt M.S., Donis-Keller H. Cancer Res. 55:1995;3399-3405.
27. Gao X., Zacharek A., Salkowski A., Grignon D.J., Sakr W., Porter A.T., Honn K.V. Cancer Res. 55:1995;1001-1005.
28. Miura K., Okita K., Furukawa Y., Matsuno S., Nakamura Y. Cancer Res. 55:1995;1828-1830.
29. Tamura G., Sakata K., Maesawa C., Susuki Y., Terashima M., Satoh K., Sekiyama S., Suzuki A., Eda Y., Satodate R. Cancer Res. 55:1995;1933-1936.
30. Rosin M.P., Cairns P., Epstein J.I., Schoenberg M.P., Sidransky D. Cancer Res. 55:1995;5213-5216.
31. Cairns P., Tokino K., Eby Y., Sidransky D. Cancer Res. 55:1995;224-227.
32. Schultz D.C., Vanderveer L., Buetow K.H., Boente M.P., Ozols R.F., Hamilton T.C., Godwin A.K. Cancer Res. 55:1995;2150-2157.
33. Takeuchi S., Bartram C.R., Miller C.W., Reiter A., Seriu T., Zimmerann M., Schrappe M., Mori N., Slater J., Miyoshi I., Koeffler H.P. Blood. 87:1996;3368-3374.
34. Polascik T.J., Cairns P., Chang W.Y.H., Schoenberg M.P., Sidransky D. Cancer Res. 55:1995;5396-5399.
35. Peiffer S.L., Herzog T.J., Tribune D.J., Mutch D.G., Gersell D.J., Goodfellow P.J. Cancer Res. 55:1995;1922-1926.
36. Brothman A.R., Steele M.R., Williams B.J., Jones E., Odelberg S., Albertsen H.M., Jorde L.B., Rohr L.R., Stephenson R.A. Genes Chromosomes Cancer. 13:1995;278-284.
37. Kerangueven F., Essioux L., Dib A., Noguchi T., Allione F., Geneix J., Longy M., Lidereau R., Eisinger F., Pebusque M.J. Oncogene. 10:1995;1023-1026.
38. Martinsson T., Sjoberg R.M., Hedborg F., Kogner P. Cancer Res. 55:1995;5681-5686.
39. Shimizu T., Sekiya T. Int. J. Cancer. 63:1995;616-620.
40. Eiriksdottir G., Sigurdsson A., Jonasson J.G., Agnarsson B.A., Sigurdsson H., Gudmundsson J., Bergthorsson J.T., Barkardottir R.B., Egilsson V., Ingvarsson S. Int. J. Cancer. 6:1995;378-382.
41. Bragadottir G., Eiriksdottir G., Sigurdsson A., Barkardottir R.B., Gudmundsson I., Jonasson J.G., Ingvarsson S. Int. J. Oncogene. 7:1995;871-876.
42. Takahashi S., Shan A.L., Ritland S.S., Delacey K.A., Bostwick D.G., Lieber M.M., Thibodrau S.N., Jenkins R.B. Cancer Res. 55:1995;4114-4119.
43. Tamura G., Ogasawara S., Nishizuka S., Sakata K., Maesawa C., Suzuki Y., Terashima M., Saito K., Satodate R. Cancer Res. 56:1996;612-615.
44. Takeuchi S., Bartram C.R., Miller C.W., Reiter A., Seriu T., Zimmerann M., Schrappe M., Mori N., Slater J., Miyoshi I., Koeffler H.P. Blood. 87:1996;3368-3374.
45. Fujii H., Szumei R., Marsh C., Zhou W., Gabrielson E. Cancer Res. 56:1996;5260-5265.
46. Man S., Ellis I.O., Sibbering M., Blamey R.W., Brook J.D. Cancer Res. 56:1996;5484-5489.
47. Chen T., Sahin A., Aldaz C.M. Cancer Res. 56:1996;5605-5609.
48. Tran Y.K., Newsham I.F. Cancer Res. 56:1996;2916-2921.
49. Achille A., Scupoli M.T., Magalini A.R., Zamboni G., Romanelli M.G., Orlandini S., Biasi M.O., lemoine N.R., Accolla R.S., Scarpa A. Int. J. Cancer. 68:1996;305-312.
50. Lee W.C., Balsara B., Liu Z., Jhanwar S.C., Testa J.R. Cancer Res. 56:1996;4297-4301.
51. Cooney K.A., Wetzel J.C., Consolino C.M., Wojno K.J. Cancer Res. 56:1996;4150-4153.
52. Hui A.B.Y., Lo K.W., Leung S.F., Choi P.H.K., Fong Y., Lee J.C.K., Huang D.P. Cancer Res. 56:1996;3225-3229.
53. Kim S.K., Fan Y., Papadimitrakopoulou V., Clayman G., Hittelman W.N., Hong W.K., Lotan R., Mao L. Cancer Res. 56:1996;2519-2521.
54. Tangir J., Loughridge N.S., Berkowitz R.S., Muto M.G., Bell D.A., Welch W.R., Mok S.C. Cancer Res. 56:1996;2501-2505.
55. Gabra H., Watson J.E., Taylor K.J., Mackay J., Leonard R.C., Steel C.M., Porteous D.J., Smyth J.F. Cancer Res. 56:1996;950-954.
56. Takeuchi S., Mori N., Koike M., Slater J., Park S., Miller C.W., Miyoshi I., koeffler H.P. Cancer Res. 56:1996;738-740.
57. Pabst T., Schwaller J., Bellomo M.J., Oestreicher M., Muhlematter D., Tichelli A., Tobler A., Fey M.F. Blood. 88:1996;1026-1034.
58. Mullokandov M.R., Kholodilov N.G., Atkin N.B., Burk R.D., Johnson A.B., Klinger H.P. Cancer Res. 56:1996;197-205.
59. Kimura M., Abe T., Sunamura M., Matsuno S., Horii A. Genes Chromosomes Cancer. 17:1996;88-93.
60. Beroud C., Fournet J.C., Jeanpierre C., Droz D., Bouvier R., Froger D., Chretien Y., Marechal J.M., Weissenbach J., Junien C. Genes Chromosomes Cancer. 17:1996;215-224.
61. Barrett M.T., Galipeau P.C., Sanchez C.A., Emond M.J., Reid B.J. Oncogene. 12:1996;1873-1878.
62. Wertheim I., Tangir J., Muto M.G., Welch W.R., Berkowitz R.S., Chen W.Y., Mok S.C. Oncogene. 12:1996;2147-2153.
63. Vocke C.D., Pozzatti R.O., Bostwick D.G., Florence C.D., Jennings S.B., Strup S.E., Duray P.H., Liotta L.A., Emmert-Buck M.R., Linehan W.M. Cancer Res. 56:1996;2411-2416.
64. Jiang X., Hitchcock A., Bryan E.J., Watson R.H., Englefield P., Thomas E.J., Campbell I.G. Cancer Res. 56:1996;3534-3539.
65. Okami K., Cairns P., Westra W.H., Linn J.F., Ahrendt S.A., Wu L., Sidransky D., Jen J. Int. J. Cancer. 74:1997;588-592.
66. Ritland S.R., Rowse G.J., Chang Y., Gendler S.J. Cancer Res. 57:1997;3520-3525.
67. Debelenko L.V., Zhuang Z., Emmert-Buck M.R., Chandrasekharappa S.C., Manickam P., Guru S.C., Marx S.J., Skarulis M.C., Spiegel A.M., Collins F.S., Jensen R.T., Liotta L.A., Lubensky I.A. Cancer Res. 57:1997;2238-2243.
68. Fong K.M., Biesterveld E.J., Virmani A., Wistuba I., Sekido Y., Bader S.A., Ahmadian M., Ong S.T., Rassool F.V., Zimmerman P.V., Giaccone G., Gazdar A.F., Minna J.D. Cancer Res. 57:1997;2256-2267.
69. Kruzelock R.P., Murphy E.C., Strong L.C., Naylor S.L., Hansen M.F. Cancer Res. 57:1997;106-109.
70. Bandera C.A., Takahashi H., Behbakht K., Liu P.C., LiVolsi V.A., Benjamin I., Morgan M.A., King S.A., Rubin S.C. J. Cancer Res. 57:1997;513-515.
71. Takita J., Hayashi Y., Kohno T., Yamaguchi N., Hanada R., Yamamoto K. Cancer Res. 57:1997;907-912.
72. Farrell W.E., Simpon D.J., Bicknell J.E., Talbot A.J., Bates A.S., Clayton R.N. Cancer Res. 57:1997;2703-2709.
73. Choi C., Cho S., Horikawa I., Berchuck A., Wang N., Cedrone E., Jhung S.W., Lee J.B., Kerr J., Chenevix-Trench G., Kim S., Barrett J.C., Koi M. Genes Chromosomes Cancer. 20:1997;234-242.
74. Ueda T., Komiya A., Emi M., Suzuki H., Shiraishi T., Yatani R., Masai M., Yasuda K., Ito H. Genes Chromosomes Cancer. 20:1997;140-147.
75. Leonard J.H., Hayward N. Genes Chromosomes Cancer. 20:1997;93-97.
76. Driouch K., Dorion-Bonnet F., Briffod M., Champeme M.H., Longy M., Lidereau R. Genes Chromosomes Cancer. 19:1997;185-191.
77. Koike M., Takeuchi S., Yokota J., Park S., Hatta Y., Miller C.W., Tsuruoka N., Koeffler H.P. Genes Chromosomes Cancer. 19:1997;1-5.
78. Laake K., Odegård Å., Andersen T.I., Bukholm I.K., Kåresen R., Nesland J.M., Ottestad L., Shiloh Y., Borresen-Dale A.L. Genes Chromosomes Cancer. 18:1997;175-180.
79. Linn J.F., Lango M., Halachmi S., Schoenberg M.P., Sidransky D. Int. J. Cancer. 74:1997;625-629.
80. Lo Y.L., Yu J.C., Huang C.S., Tseng S.L., Chang T.M., Chang K.J., Wu C.W., Shen C.Y. Int. J. Cancer. 79:1998;580-587.
81. Piao Z., Park C., Park J.H., Kim H. Int. J. Cancer. 79:1998;356-360.
82. Mutirangura A., Pornthanakasem W., Sriuranpong V., Supiyaphun P., Voravud N. Int. J. Cancer. 78:1998;153-156.
83. Takei K., Kohno T., Hamada K., Takita J., Noguchi M., Matsuno Y., Hirohashi S., Uezato H., Yokota J. Cancer Res. 58:1998;3700-3705.
84. Iida A., Kurose K., Isobe R., Akiyama F., Sakamoto G., Yoshimoto M., Kasumi F., Nakamura Y., Emi M. Genes Chromosomes Cancer. 21:1998;108-112.
85. Singh B., Ittmann M.M., Krolewski J.J. Genes Chromosomes Cancer. 21:1998;166-171.
86. Deng L., Jing N., Tan G., Zhou M., Zhan F., Xie Y., Car L., Li G. Genes Chromosomes Cancer. 23:1998;21-25.
87. Zhu J.J., Santarius T., Wu X., Tsong J., Guha A., Wu J.K., Hudson T.J., Black P.M. Genes Chromosomes Cancer. 21:1998;207-216.
88. Kohno T., Kawanishi M., Matsuda S., Ichikawa H., Takada M., Ohki M., Yamaoto T., Yokota J. Genes Chromosomes Cancer. 21:1998;236-243.
89. Grundy R.G., Pritchard J., Scambler P., Cowell J.K. Oncogene. 17:1998;395-400.
90. Petersen S., Rudolf J., Bockmuhl U., Gellert K., Wolf G., Dietel M., Petersen I. Oncogene. 17:1998;449-454.
91. Zhang J., Nelson M., McIver B., Hay I.D., Goellner J.R., Grant C.S., Eberhardt N.L., Smith D.I. Oncogene. 17:1998;789-793.
92. Konishi H., Takahashi T., Kozaki K., Yatabe Y., Mitsudomi T., Fujii Y., Sugiura T., Matsuda H., Takahashi T. Oncogene. 17:1998;2095-2100.
93. Wright K., Wilson P.J., Kerr J., Do K., Hurst T., Khoo S.K., Ward B., Chenevix-Trench G. Oncogene. 17:1998;1185-1188.
94. Kim S.K., Ro J.Y., Kemp B.L., Lee J.S., Kwon T.J., Hong W.K., Mao L. Oncogene. 17:1998;1749-1753.
95. Srikantan V., Sesterhenn I.A., Davis L., Hankins G.R., Avallone F.A., Livezey J.R., Connelly R., Mostofi F.K., McLeod D.G., Moul J.W., Chandrasekharappa S.C., Srivastava S. Int. J. Cancer. 84:1999;331-335.
96. Jimenez P., Canton J., Collado A., Cabrera T., Serrano A., Real L.M., Garcia A., Ruiz-Cabello F., Garrido F. Int. J. Cancer. 83:1999;91-97.
97. Wistuba I.I., Behrens C., Virmani A.K., Milchgrub S., Syed S., Lam S., Mackay B., Minna J.D., Gazdar A.F. Cancer Res. 59:1999;1973-1979.
98. Simpson D.J., Magnay J., Bicknell J.E., Barkan A.L., McNicol A.M., Clayton R.N., Farrell W.E. Cancer Res. 59:1999;1562-1566.
99. Velickovic M., Delahunt B., Grebe S.K.G. Cancer Res. 59:1999;1323-1326.
100. Balsara B.R., Bell D.W., Sonoda G., Rienzo A.D., Manoir S.D., Jhanwar S.C., Testa J.R. Cancer Res. 59:1999;450-454.
101. Pineau P., Nagai H., Prigent S., Wei Y., Gyapay G., Weissenbach J., Tiollais P., Buendia M., Dejean A. Oncogene. 18:1999;3127-3134.
102. Shridhar V., Staub J., Huntley B., Cliby W., Jenkins R., Pass H.I., Hartmann L., Smith D.I. Oncogene. 18:1999;3913-3918.
103. Imyanitov E.N., Birrell G.W., Filippovich I., Sorokina N., Arnold J., Mould M.A., Wright K., Walsh M., Mok S.C., Lavin M.F., Chenevix-Trench G., Khanna K.K. Oncogene. 18:1999;4640-4642.
104. Chughtai S.A., Crundwell M.C., Cruickshank N.R.J., Affie E., Armstrong S., Knowles M.A., Takle L.A., Kuo M., Khan N., Phillips S.M.A., Neoptolemos J.P., Morton D.G. Oncogene. 18:1999;657-665.
105. Ohgaki K., Iida A., Ogawa O., Kubota Y., Akimoto M., Emi M. Genes Chromosomes Cancer. 25:1999;1-5.
106. Abe T., Makino N., Furukawa T., Ouyang H., Kimura M., Yatsuoka T., Yokoyama T., Inoue H., Fukushige S., Hoshi M., Hayashi Y., Sunamura M., Kobari M., Matsuno S., Horii A. Genes Chromosomes Cancer. 25:1999;60-64.
107. Fukino K., Iida A., Teramoto A., Sakamato G., Kasumi F., Nakamura Y., Emi M. Genes Chromosomes Cancer. 24:1999;345-350.
108. Ueda T., Emi M., Suzuki H., Komiya A., Akakura K., Ichikawa T., Watanabe M., Shiraishi T., Masai M., Igarashi T., Ito H. Genes Chromosomes Cancer. 24:1999;183-190.
109. Grazia di Iasio M., Calin G., Tibiletti M.G., Vorechovsky I., Benediktsson K.P., Taramelli R., Barbanti-Brodano G., Negrini M. Oncogene. 18:1999;1635-1638.
110. Zeng W.R., Watson P., Lin J., Jothy S., Lidereau R., Park M., Nepveu A. Oncogene. 18:1999;2015-2021.
111. Chughtai S.A., Crundwell M.C., Cruickshank N.R.J., Affie E., Armstrong S., Knowles M.A., Takle L.A., Kuo M., Khan N., Phillips S.M.A., Neoptolemos J.P., Morton D.G. Oncogene. 18:1999;657-665.
112. Wang X., Uzawa K., Imai F.L., Tanzawa H. Oncogene. 18:1999;823-825.
113. Lerebours F., Olschwang S., Thuille B., Schmitz A., Fouchet P., Buecher B., Martinet N., Galateau F., Thomas G. Int. J. Cancer. 81:1999;854-858.
114. Herbst R.A., Gutzmer R., Matiaske F., Mommert S., Casper U., Kapp A., Weiss J. Int. J. Cancer. 80:1999;205-209.
115. Braga E., Pugacheva E., Bazov I., Ermilova V., Kazubskaya T., Mazurenko N., Kisseljov F., Liu J., Garkavtseva R., Zabarovsky E., Kisselev L. FEBS Lett. 454:1999;215-219.
116. Kallioniemi O.P., Kallioniemi A., Piper J., Isola J., Waldman F.M., Gray W.J., Pinkel D. Gene Chromosomes Cancer. 10:1994;231-243.